Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  226  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69589973--69590109
51
2.9
49
78
12
144
30
29
17
22
1.97
69590033--69590116
43
2.0
43
92
0
141
26
32
21
20
1.98
69592337--69592378
16
2.5
17
84
11
59
21
16
0
61
1.34
69596126--69596196
36
2.0
36
88
0
106
47
25
14
12
1.79
69599978--69600029
18
2.9
18
72
11
61
28
17
11
42
1.84
69601982--69602152
93
1.8
93
94
0
306
21
22
28
27
1.99
69601986--69602157
46
3.7
46
77
13
199
22
22
27
27
1.99
69605561--69605628
21
3.2
21
73
8
57
17
22
16
44
1.87
69605602--69605656
21
2.8
20
83
8
76
9
20
23
47
1.78
69610129--69610308
25
7.3
25
66
14
86
33
21
25
20
1.97
69614419--69614449
16
1.9
16
93
0
53
35
22
0
41
1.54
69614416--69614455
20
2.0
20
85
0
53
37
22
0
40
1.54
69614688--69614888
108
1.8
110
81
2
253
24
23
16
34
1.95
69623988--69624012
13
1.9
13
100
0
50
32
4
24
40
1.73
69628482--69628521
20
2.0
21
85
5
55
42
0
20
37
1.52
69629360--69629537
49
3.7
48
77
5
162
29
21
26
23
1.99
69640532--69640568
18
2.1
18
100
0
74
51
10
10
27
1.70
69641635--69641676
21
2.0
21
85
0
57
2
21
14
61
1.43
69642391--69642616
48
4.8
48
78
8
223
28
20
23
27
1.99
69659187--69659230
19
2.5
17
78
10
52
34
0
2
63
1.07
69659248--69659288
17
2.4
18
76
15
52
34
2
0
63
1.08
69659943--69659969
7
3.9
7
100
0
54
11
14
0
74
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69675401--69675438
20
1.9
20
89
10
60
39
2
7
50
1.46
69682953--69683117
35
4.6
35
82
10
181
31
10
24
33
1.90
69682957--69683122
74
2.3
75
83
9
204
32
11
22
33
1.90
69690442--69690607
74
2.3
75
83
9
204
32
11
22
33
1.90
69690442--69690605
35
4.6
35
83
10
172
31
11
23
33
1.90
69693421--69693658
87
2.7
87
87
3
338
37
18
14
29
1.90
69699039--69699072
12
3.1
11
91
8
52
29
2
0
67
1.05
69698920--69699271
177
2.0
176
94
0
623
26
11
15
46
1.80
69706922--69706950
14
2.0
15
93
6
51
34
6
24
34
1.82
69710544--69710636
33
2.8
32
95
3
159
19
8
40
31
1.81
69719656--69719730
23
3.3
23
81
3
80
21
26
24
28
1.99
69722068--69722234
40
4.2
40
81
3
176
24
26
22
26
2.00
69728379--69728432
26
2.1
26
92
0
90
44
14
14
25
1.84
69728796--69728861
27
2.4
28
82
2
80
28
19
21
30
1.98
69729992--69730041
10
5.1
10
95
4
93
30
20
0
50
1.49
69732153--69732196
20
2.1
21
87
4
63
43
2
36
18
1.63
69740778--69740826
23
2.1
23
96
0
89
46
10
8
34
1.67
69744511--69744602
40
2.3
40
87
5
125
25
23
26
25
2.00
69747149--69747244
42
2.3
42
90
0
147
20
34
28
16
1.95
69749483--69749579
50
1.9
50
89
4
151
31
28
23
15
1.95
69753419--69753594
46
3.8
46
78
10
196
19
21
30
28
1.98
69753415--69753587
93
1.9
93
92
0
292
20
21
30
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69757093--69757171
15
5.4
15
77
10
83
10
17
13
58
1.63
69757084--69757170
29
3.0
29
81
8
95
10
17
16
56
1.67
69759090--69759265
46
3.8
46
78
10
196
19
21
30
28
1.98
69759086--69759258
93
1.9
93
92
0
292
20
21
30
27
1.98
69765508--69765650
40
3.6
40
80
3
128
28
24
25
20
1.99
69765506--69765659
80
1.9
80
82
0
191
29
24
25
20
1.99
69765630--69765727
40
2.5
40
75
5
101
30
26
26
16
1.97
69767472--69767625
43
3.6
42
82
11
179
22
19
28
29
1.98
69770344--69770528
48
3.9
48
97
0
334
35
6
27
30
1.82
69770669--69770771
37
2.8
37
90
0
161
25
19
31
24
1.98
69789388--69789536
80
1.9
80
81
2
183
22
30
24
22
1.99
69789429--69789536
40
2.7
38
85
8
128
21
29
25
23
1.99
69797500--69797648
80
1.9
80
81
2
183
22
29
24
22
1.99
69797541--69797648
40
2.7
38
85
8
128
21
29
25
23
1.99
69803321--69803464
51
2.8
50
94
2
243
30
24
12
32
1.92
69803488--69803582
28
3.5
28
80
13
128
27
22
14
35
1.93
69804973--69805142
47
3.7
46
80
8
193
27
18
30
22
1.98
69804921--69805142
93
2.4
94
80
9
240
28
19
28
22
1.98
69823659--69823758
50
2.0
50
96
0
182
51
13
17
19
1.77
69832347--69832405
20
2.8
21
82
5
66
40
16
0
42
1.49
69833431--69833763
126
2.6
125
89
1
495
28
15
20
35
1.93
69833749--69833854
40
2.6
40
82
7
108
27
23
17
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69834070--69834117
15
3.3
15
85
5
71
18
0
33
47
1.49
69834016--69834226
22
9.8
21
74
6
136
21
0
34
44
1.56
69834099--69834210
36
3.1
36
78
3
118
17
0
38
43
1.50
69834145--69834226
36
2.3
36
82
4
103
19
0
36
43
1.51
69834070--69834227
7
22.0
7
73
10
95
19
0
37
43
1.52
69840676--69840704
13
2.2
13
100
0
58
31
6
31
31
1.84
69842917--69842974
13
4.4
13
69
4
53
44
1
17
36
1.59
69845449--69845497
17
3.0
16
75
16
55
24
16
20
38
1.92
69847151--69847246
41
2.3
41
85
0
138
21
32
14
31
1.94
69851481--69851608
66
1.9
66
96
0
238
27
4
23
44
1.73
69852245--69852304
27
2.2
27
87
0
93
28
10
23
38
1.87
69852474--69852567
27
3.5
27
86
0
125
44
15
19
20
1.86
69853377--69853406
2
15.5
2
93
6
53
50
0
0
50
1.00
69853614--69853667
23
2.2
24
81
12
58
40
7
7
44
1.60
69857108--69857140
16
2.0
17
88
5
50
66
0
0
33
0.92
69857219--69857280
26
2.3
26
86
10
81
53
11
0
35
1.37
69857317--69857794
240
2.0
230
81
9
545
45
8
8
37
1.66
69857901--69857926
7
3.7
7
100
0
52
42
0
0
57
0.98
69857560--69858016
242
1.9
238
81
7
557
43
7
9
38
1.66
69862038--69862303
47
5.7
47
73
17
157
29
18
28
24
1.98
69862080--69862301
47
4.7
47
80
10
233
28
18
29
24
1.98
69862038--69862300
140
1.9
141
83
7
347
29
18
28
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69864403--69864510
26
4.2
26
91
0
180
32
8
24
35
1.85
69866282--69866384
29
3.6
28
81
5
116
21
16
33
29
1.95
69874239--69874341
29
3.6
28
81
5
116
21
16
33
29
1.95
69883569--69883638
27
2.6
27
95
2
122
28
18
30
22
1.98
69883569--69883719
28
5.5
28
77
8
132
28
13
27
29
1.95
69890734--69890808
28
2.6
28
78
2
87
21
36
20
22
1.96
69890792--69890865
29
2.6
29
95
0
139
27
31
14
27
1.95
69898609--69898683
28
2.6
28
78
2
87
21
36
20
22
1.96
69898667--69898740
29
2.6
29
95
0
139
27
31
14
27
1.95
69902045--69902199
28
5.6
28
79
10
149
27
14
29
29
1.95
69905074--69905387
47
6.7
46
75
10
219
30
17
29
22
1.97
69905113--69905386
48
5.8
47
76
10
231
30
17
29
22
1.96
69907739--69907805
27
2.5
27
82
0
80
34
16
29
19
1.94
69910067--69910196
40
3.2
40
80
4
156
23
24
27
23
2.00
69914781--69914907
46
2.7
47
85
6
150
24
27
18
29
1.98
69915855--69915886
16
2.0
16
93
0
55
25
18
9
46
1.79
69918262--69918353
35
2.6
35
94
0
157
34
25
8
31
1.86
69920601--69920734
64
2.1
64
95
0
241
38
12
4
44
1.63
69920782--69920852
24
3.0
24
93
0
124
28
19
8
43
1.80
69921030--69921096
29
2.3
29
94
0
116
43
1
0
55
1.09
69921032--69921080
16
3.2
16
68
26
52
42
2
0
55
1.11
69921208--69921573
9
41.4
9
80
5
381
47
12
2
37
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69921219--69921546
44
7.2
44
86
6
424
47
12
2
37
1.55
69921208--69921546
97
3.6
95
88
7
496
47
12
2
37
1.55
69921452--69921573
26
4.6
26
78
8
88
48
12
1
37
1.51
69926783--69926811
14
2.1
14
93
6
51
34
0
6
58
1.25
69927225--69927300
21
3.6
21
82
7
100
30
18
50
1
1.55
69927548--69927614
31
2.2
31
83
0
80
17
7
17
56
1.63
69928872--69928933
19
3.3
19
80
11
65
56
4
0
38
1.21
69929823--69929907
41
2.1
41
95
0
152
43
9
11
35
1.74
69934837--69934886
20
2.5
20
86
0
64
44
0
14
42
1.44
69937822--69937951
46
2.8
48
80
13
164
30
28
20
21
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438