Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  338  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105777859--105777925
29
2.3
30
85
12
86
49
0
0
50
1.00
105777915--105777954
13
2.8
15
78
21
50
62
0
0
37
0.95
105781182--105781228
16
2.9
16
75
12
51
21
2
6
70
1.20
105781453--105781504
20
2.6
21
79
14
65
25
0
9
65
1.23
105784862--105784922
30
2.1
30
84
6
81
55
3
9
31
1.48
105793895--105794126
128
1.8
127
85
2
331
34
15
17
31
1.92
105794716--105794759
22
2.0
22
100
0
88
40
9
4
45
1.56
105797022--105797329
133
2.3
133
85
2
413
27
26
17
28
1.97
105796814--105797195
177
2.2
175
80
6
412
27
27
17
28
1.97
105797277--105797373
44
2.2
45
83
10
128
30
27
15
25
1.96
105796845--105797506
310
2.1
309
84
4
866
25
27
17
28
1.98
105797138--105797644
178
2.8
178
87
1
694
26
27
18
28
1.98
105797312--105797617
89
3.4
88
67
9
217
25
27
18
28
1.98
105802382--105802427
25
1.9
24
86
8
67
6
19
17
56
1.62
105808920--105808982
33
2.0
31
81
6
72
34
9
9
46
1.69
105809027--105809065
20
2.0
20
89
0
60
30
10
5
53
1.56
105820502--105820712
64
3.2
64
62
20
151
29
26
18
26
1.98
105820342--105820754
137
3.0
137
99
0
808
31
24
19
24
1.98
105821019--105821094
26
2.8
27
82
4
82
27
13
22
36
1.91
105822527--105822662
26
5.2
26
94
0
236
36
25
5
33
1.78
105824409--105824605
86
2.3
87
80
1
225
35
21
20
22
1.96
105826553--105826584
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105826722--105826760
20
2.0
20
89
0
60
30
10
5
53
1.56
105826771--105826838
25
2.6
26
77
11
68
30
7
4
57
1.46
105827975--105828037
33
1.9
33
86
0
90
25
7
33
33
1.85
105831934--105831986
20
2.8
18
81
10
61
52
0
3
43
1.19
105831941--105831989
20
2.5
20
86
0
71
51
0
4
44
1.20
105832079--105832116
20
1.9
20
94
0
67
44
13
7
34
1.72
105832100--105832137
14
2.7
14
91
0
58
36
18
7
36
1.80
105834742--105834780
19
2.0
21
90
10
64
28
0
25
46
1.53
105835567--105835613
19
2.5
19
100
0
94
48
10
21
19
1.78
105836800--105837029
127
1.8
126
83
6
304
34
17
16
30
1.93
105837831--105837861
3
10.3
3
100
0
62
67
0
0
32
0.91
105844120--105844161
2
21.0
2
95
0
75
52
0
0
47
1.00
105844890--105844931
18
2.3
19
91
4
68
57
0
4
38
1.20
105845274--105845350
6
12.7
6
86
8
111
51
0
0
48
1.00
105848350--105848388
21
1.9
20
85
15
53
38
0
10
51
1.36
105850608--105850755
39
3.9
38
87
3
190
48
5
16
29
1.68
105850610--105850756
76
1.9
78
87
2
217
48
5
17
28
1.68
105851293--105851317
2
12.5
2
100
0
50
48
0
0
52
1.00
105855226--105855254
15
1.9
15
100
0
58
55
0
37
6
1.27
105863238--105865246
210
9.7
210
89
3
2889
29
17
21
30
1.97
105863238--105865246
618
3.2
619
89
4
2854
29
17
21
30
1.97
105863238--105865246
421
4.8
420
90
3
2934
29
17
21
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105865346--105865418
38
1.9
38
88
5
112
28
17
30
23
1.97
105866844--105866949
27
3.9
27
84
9
135
34
22
25
16
1.95
105866838--105866949
54
2.1
54
86
3
154
34
23
25
16
1.95
105867055--105867117
26
2.3
26
83
5
72
30
11
25
33
1.90
105869414--105869488
38
2.0
38
91
0
123
45
9
10
34
1.71
105869792--105869903
25
4.5
25
74
8
77
35
20
23
20
1.96
105871310--105871530
47
4.6
46
74
14
164
29
16
29
23
1.97
105874478--105874595
41
3.1
41
60
28
98
32
17
28
21
1.96
105874446--105874609
71
2.3
71
100
0
328
35
17
28
18
1.94
105882058--105882175
41
3.1
41
60
28
98
32
17
28
21
1.96
105882026--105882189
71
2.3
71
100
0
328
35
17
28
18
1.94
105889389--105889569
46
3.9
47
77
7
156
29
18
28
23
1.98
105895026--105895282
132
1.9
132
96
0
478
28
10
19
42
1.84
105902801--105902852
25
2.1
25
85
0
68
40
17
7
34
1.78
105907966--105908095
40
3.2
40
82
4
165
23
24
28
23
2.00
105925147--105925175
10
2.9
10
100
0
58
31
0
10
58
1.31
105930707--105930914
40
5.2
39
83
3
211
25
25
23
25
2.00
105930707--105930912
80
2.6
81
83
4
240
25
26
23
25
2.00
105930893--105931217
121
2.6
121
95
2
569
32
26
10
30
1.90
105938855--105939062
40
5.2
40
81
4
213
25
25
22
25
2.00
105938855--105939061
81
2.6
80
82
5
240
25
26
22
25
2.00
105945546--105945746
39
5.1
39
80
6
201
25
27
21
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105945546--105945713
79
2.1
79
85
4
223
26
27
22
23
1.99
105945546--105945746
79
2.5
79
81
6
194
25
27
21
24
2.00
105953490--105953691
40
5.1
40
79
5
196
26
26
21
25
1.99
105953488--105953691
79
2.6
79
79
5
207
26
26
21
25
1.99
105959850--105959883
16
2.2
16
89
5
52
88
2
8
0
0.62
105959879--105959915
16
2.3
16
85
0
56
62
29
0
8
1.24
105960721--105960750
11
2.7
11
89
0
51
40
0
0
60
0.97
105962980--105963015
12
3.0
12
87
0
54
25
22
5
47
1.73
105969903--105970166
71
3.7
69
83
6
323
25
14
22
37
1.92
105970045--105970291
122
2.0
124
89
3
383
24
13
22
39
1.90
105969736--105970328
263
2.3
257
94
2
1033
25
14
22
36
1.93
105970166--105970606
72
6.1
71
69
10
297
25
16
21
36
1.94
105970396--105970607
74
2.9
74
82
4
250
27
17
23
31
1.97
105970597--105970631
14
2.5
14
90
0
52
17
20
5
57
1.60
105970612--105970774
74
2.1
77
87
5
233
28
19
20
30
1.97
105970611--105971331
77
9.1
76
68
18
244
29
18
19
32
1.96
105970450--105971110
165
4.0
165
90
3
935
27
18
20
33
1.96
105970795--105970939
74
1.9
76
88
5
224
30
18
22
28
1.97
105970396--105971268
332
2.7
314
82
9
1006
28
18
20
32
1.96
105970967--105971306
72
4.5
73
81
6
378
30
17
19
32
1.95
105970966--105971682
88
9.0
76
73
14
434
28
16
19
35
1.94
105971454--105971515
30
2.1
30
90
6
99
19
9
29
41
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105971106--105971683
253
2.3
247
85
5
758
28
16
18
36
1.93
105972327--105972362
16
2.3
16
90
4
56
88
2
8
0
0.59
105972358--105972395
17
2.3
17
81
4
51
60
31
0
7
1.25
105973202--105973231
11
2.7
11
89
0
51
40
0
0
60
0.97
105974952--105975014
17
3.7
17
79
8
83
44
7
6
41
1.59
105976653--105976696
17
2.5
19
85
10
58
52
13
0
34
1.41
105979107--105979170
26
2.4
27
81
2
76
28
14
25
32
1.94
105982139--105982194
29
1.9
29
85
7
78
23
17
3
55
1.58
105989505--105989534
15
2.0
15
100
0
60
26
20
20
33
1.97
105996323--105996374
26
2.0
27
85
11
72
55
3
7
32
1.46
105997509--105997563
24
2.2
25
90
6
85
58
3
5
32
1.38
105997520--105997584
21
2.9
22
84
6
69
60
7
1
30
1.34
105997584--105997651
9
7.7
9
73
15
61
57
1
2
38
1.23
105997578--105997644
34
1.9
35
84
3
91
58
1
2
37
1.23
105997525--105997655
53
2.4
57
82
12
157
58
4
2
34
1.31
105997667--105997714
22
2.3
22
85
7
64
58
4
4
33
1.36
105997667--105997723
22
2.8
20
80
12
62
61
3
3
31
1.30
105998055--105998107
16
3.2
16
78
5
61
60
5
3
30
1.37
105998065--105998118
17
3.2
16
79
7
63
62
3
1
31
1.23
105998384--105998431
25
1.9
25
83
8
62
60
0
4
35
1.16
106000598--106000726
54
2.4
54
92
3
208
40
13
13
31
1.85
106000794--106000827
14
2.4
14
95
0
59
58
5
17
17
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106000672--106000899
89
2.7
86
83
12
281
37
17
16
28
1.91
106011091--106011132
20
2.2
19
86
4
57
2
40
0
57
1.12
106011240--106011293
26
2.1
26
100
0
108
29
24
7
38
1.82
106012434--106012478
20
2.3
19
77
7
54
31
17
24
26
1.97
106012439--106012476
20
1.9
20
88
0
58
34
18
18
28
1.95
106012507--106012620
28
3.9
28
71
19
81
26
21
27
25
1.99
106012499--106012643
61
2.4
61
85
8
179
26
20
26
26
1.99
106015764--106015815
26
2.0
27
85
11
72
55
3
7
32
1.46
106016293--106016321
15
1.9
15
100
0
58
55
10
0
34
1.34
106016972--106017088
24
4.8
24
76
15
89
57
3
3
35
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438