genome.fa.s3.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  163  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49716184--49720681	633	7.1	633	92	0	7286	29	21	15	32	1.95
49721923--49721955	17	1.9	17	93	0	57	27	21	6	45	1.75
49724286--49724333	20	2.3	21	82	10	62	81	4	14	0	0.84
49725560--49725666	40	2.7	40	82	0	124	28	22	25	23	1.99
49725601--49725727	40	3.2	39	83	8	141	22	24	29	23	1.99
49733537--49733643	40	2.7	40	82	0	124	28	22	25	23	1.99
49733578--49733704	40	3.2	39	83	8	141	22	24	29	23	1.99
49740758--49741117	49	7.4	49	92	0	560	32	8	28	30	1.87
49740758--49741117	195	1.8	195	90	0	585	32	8	28	30	1.87
49741188--49741274	37	2.3	36	94	5	147	20	19	33	26	1.97
49756968--49757037	27	2.5	28	97	2	133	28	12	27	31	1.93
49770793--49770928	48	2.8	48	88	2	184	22	28	21	27	1.99
49778715--49778791	26	2.9	26	77	9	75	28	15	12	42	1.84
49782814--49782937	40	3.1	39	81	4	140	25	24	28	21	1.99
49790898--49791004	38	2.7	41	80	13	125	23	25	29	21	1.99
49794917--49795021	29	3.6	29	77	2	86	25	33	17	23	1.96
49794955--49795076	58	2.1	59	87	4	178	25	31	15	27	1.96
49794976--49795076	29	3.5	29	95	1	186	26	29	14	28	1.95
49799946--49800062	33	3.5	33	84	0	144	21	40	17	21	1.92
49805798--49805843	23	2.0	23	95	0	83	30	28	13	28	1.94
49822919--49822979	30	2.0	30	83	0	77	31	22	8	37	1.84
49826863--49827047	79	2.3	82	83	7	229	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49826864--49827055	40	4.8	40	79	7	151	24	24	28	22	2.00
49826863--49827080	79	2.7	79	79	6	183	24	23	27	24	2.00
49834899--49835083	79	2.3	82	83	7	229	24	24	27	23	2.00
49834900--49835091	40	4.8	40	79	7	151	24	24	28	22	2.00
49834899--49835116	79	2.7	79	79	6	183	24	23	27	24	2.00
49840373--49840436	32	2.0	32	100	0	128	34	25	9	31	1.87
49841201--49841238	18	2.0	19	90	10	60	50	15	2	31	1.58
49842341--49842403	31	2.0	31	84	0	81	26	23	12	36	1.91
49842596--49842738	23	6.0	24	89	9	213	27	20	20	30	1.98
49842596--49842738	47	3.0	48	89	9	213	27	20	20	30	1.98
49842788--49842852	20	3.2	20	88	0	94	29	21	13	35	1.92
49842788--49842841	11	5.3	11	72	17	53	27	20	14	37	1.92
49842889--49842936	25	1.9	25	86	0	69	25	16	25	33	1.96
49844054--49844087	18	1.9	17	94	5	59	64	8	17	8	1.47
49848796--49848859	31	2.1	31	87	0	92	25	21	15	37	1.93
49849052--49849171	24	5.0	24	88	10	174	27	21	20	30	1.98
49849073--49849170	47	2.1	47	94	5	171	28	20	20	30	1.98
49849220--49849266	20	2.3	20	88	0	67	29	21	12	36	1.91
49849303--49849350	25	1.9	25	91	0	78	25	14	25	35	1.94
49852051--49852182	54	2.4	54	87	0	183	24	15	28	32	1.95
49860069--49860115	21	2.2	21	88	0	67	17	4	2	76	1.04
49861209--49861234	6	4.3	6	100	0	52	19	19	15	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49861796--49861839	22	2.0	22	82	8	54	61	4	13	20	1.50
49888902--49889032	30	4.5	30	86	8	171	32	13	25	28	1.94
49888902--49889032	58	2.2	58	86	4	174	32	13	25	28	1.94
49891317--49891371	25	2.2	26	80	9	60	10	9	1	78	1.05
49894417--49894562	40	3.7	40	84	0	175	24	27	21	26	2.00
49894449--49894600	40	3.8	40	84	5	164	23	25	22	28	1.99
49902512--49902645	40	3.3	40	83	6	155	23	27	22	26	2.00
49904735--49904900	40	4.2	40	83	4	187	25	27	21	25	1.99
49918060--49918086	14	1.9	14	100	0	54	33	22	22	22	1.97
49925363--49925419	30	1.9	30	85	0	78	35	10	10	43	1.74
49925678--49925711	17	1.9	18	88	5	52	50	5	5	38	1.51
49931696--49931764	29	2.4	29	92	0	120	52	10	2	34	1.50
49931844--49931901	22	2.7	22	81	5	66	60	3	3	32	1.30
49936876--49936997	43	2.9	42	79	13	142	29	24	15	30	1.96
49940187--49940342	34	4.6	34	84	0	159	44	10	12	33	1.76
49944175--49944240	28	2.4	27	90	7	98	21	7	25	45	1.78
49945538--49945575	20	1.9	20	88	0	58	52	10	2	34	1.50
49951811--49951874	27	2.4	27	92	7	105	20	9	26	43	1.82
49953172--49953209	20	1.9	20	88	0	58	52	10	2	34	1.50
49953730--49953819	42	2.1	42	81	0	99	17	18	34	28	1.94
49960404--49960492	41	2.2	41	87	4	126	24	19	20	35	1.95
49961478--49961558	27	3.0	27	83	8	76	39	16	9	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49961487--49961576	27	3.3	28	84	9	107	40	16	10	33	1.82
49961582--49961766	27	6.9	27	89	1	228	28	23	7	40	1.82
49961663--49961887	27	8.3	27	80	6	143	36	19	7	36	1.80
49961663--49961782	54	2.2	54	87	0	168	30	20	7	41	1.79
49961744--49961895	56	2.8	54	76	11	157	40	18	7	33	1.78
49961625--49961794	81	2.1	81	81	2	198	31	21	6	40	1.78
49961639--49961812	81	2.2	81	79	1	188	32	21	6	39	1.80
49961933--49962010	27	2.9	27	77	11	88	37	21	20	20	1.95
49963249--49963305	9	5.9	9	73	15	51	35	8	21	35	1.84
49963247--49963317	20	3.5	20	94	0	124	35	11	21	32	1.89
49963258--49963312	11	5.4	11	70	16	55	36	12	20	30	1.90
49963364--49963557	25	8.0	24	89	5	261	27	21	23	27	1.99
49963748--49963810	30	2.1	31	87	3	92	36	14	23	25	1.93
49966514--49966594	27	3.0	27	83	8	76	39	16	9	34	1.81
49966533--49966608	27	2.8	27	88	4	91	39	17	11	31	1.85
49966547--49966612	27	2.4	27	92	0	105	39	16	10	33	1.83
49966618--49966799	27	6.8	26	89	3	206	28	24	7	39	1.83
49966724--49966921	27	7.3	27	78	7	141	37	20	7	34	1.80
49966697--49966816	54	2.2	54	84	0	150	31	22	6	39	1.80
49966668--49966826	81	2.0	80	79	1	174	31	22	6	40	1.78
49966967--49967044	27	2.9	27	75	17	81	38	21	19	20	1.94
49968195--49968242	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49968279--49968348	20	3.5	20	90	3	115	35	11	20	32	1.88
49968395--49968557	23	7.1	23	92	2	267	28	21	21	28	1.99
49968395--49968579	23	8.0	22	89	7	255	28	21	22	28	1.99
49968771--49968834	31	2.1	31	90	0	101	35	15	23	25	1.94
49972976--49973057	29	2.8	29	98	0	155	29	14	30	25	1.95
49980874--49980955	29	2.8	29	98	0	155	29	14	30	25	1.95
49987157--49987205	25	2.0	25	100	0	98	24	32	18	24	1.97
49992095--49992285	6	31.0	6	72	16	142	49	15	17	17	1.80
49992127--49992285	62	2.6	62	94	0	273	47	15	19	18	1.83
49992148--49992285	37	3.7	37	80	11	101	47	15	18	18	1.82
49992127--49992285	25	6.4	25	81	8	127	47	15	19	18	1.83
49992127--49992259	19	6.8	19	73	19	121	47	15	19	18	1.83
49992806--49993057	27	9.3	27	81	5	253	24	19	17	38	1.93
49992810--49993048	81	3.0	81	83	3	313	24	20	17	37	1.94
49993176--49993542	54	6.8	54	91	0	574	31	8	19	40	1.82
49993093--49993542	27	16.7	27	84	2	510	31	8	19	40	1.83
49999300--49999354	24	2.3	24	87	3	76	25	36	20	18	1.94
50000544--50000634	44	2.1	43	81	4	101	43	18	17	19	1.88
50000786--50000976	68	2.8	68	77	7	190	43	14	12	29	1.82
50000883--50000976	34	2.8	34	79	6	102	46	13	10	28	1.77
50007931--50008089	27	5.9	27	79	10	155	35	20	23	20	1.96
50007949--50008089	54	2.6	54	89	2	212	35	21	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50009780--50009942	40	4.1	39	79	10	177	25	22	26	25	2.00
50011365--50011427	26	2.3	26	83	5	72	30	11	25	33	1.90
50016434--50016461	2	14.0	2	100	0	56	50	0	0	50	1.00
50019904--50020014	27	4.1	26	83	6	141	35	23	23	18	1.96
50019904--50020014	54	2.1	54	96	0	204	35	23	23	18	1.96
50020123--50020185	26	2.3	26	83	5	72	30	9	25	34	1.88
50021626--50021681	26	2.2	26	96	0	103	35	25	7	32	1.83
50026016--50026045	8	3.6	8	91	8	51	3	0	10	86	0.67
50032961--50033002	19	2.2	20	86	4	59	33	0	2	64	1.07
50039285--50039434	40	3.8	39	78	7	135	22	26	24	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438