genome.fa.s3.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  136  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40459051--40459108	26	2.2	26	87	0	98	39	20	18	20	1.92
40460235--40460398	43	3.8	44	76	7	133	25	17	24	32	1.96
40466603--40466820	40	5.5	40	85	4	248	26	27	22	23	1.99
40466603--40466820	80	2.7	79	86	6	273	26	27	22	23	1.99
40470368--40470471	40	2.6	40	84	3	129	25	21	26	26	1.99
40470402--40470535	40	3.4	40	79	3	146	25	20	26	26	1.99
40472507--40472636	40	3.3	40	82	5	158	25	27	20	26	1.99
40481724--40481930	40	5.2	40	83	2	249	25	21	26	26	2.00
40481724--40481930	79	2.6	80	82	2	256	25	21	26	26	2.00
40487941--40488009	34	2.0	36	85	5	97	31	23	18	26	1.97
40491358--40491542	43	4.3	43	83	0	217	27	15	25	31	1.95
40491488--40491677	56	3.4	56	91	1	301	26	13	25	34	1.93
40491488--40491705	56	3.9	56	87	3	226	27	13	25	33	1.94
40491488--40491705	112	1.9	112	83	5	280	27	13	25	33	1.94
40494664--40494790	44	2.9	44	83	5	134	23	14	26	34	1.94
40495861--40495898	19	2.0	20	85	15	53	39	23	0	36	1.55
40496126--40496290	45	3.7	44	75	13	165	29	29	19	22	1.98
40501681--40501718	19	2.0	20	85	15	53	39	23	0	36	1.55
40501944--40502109	46	3.7	45	79	12	187	28	29	19	21	1.98
40501945--40502112	92	1.8	91	91	3	275	28	29	20	21	1.98
40509203--40509338	43	3.2	43	79	3	148	24	14	25	35	1.94
40511216--40511326	47	2.4	47	85	0	141	27	14	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40511945--40511983	12	3.2	12	88	0	60	33	0	46	20	1.51
40519819--40519857	12	3.2	12	81	0	51	38	0	41	20	1.53
40529095--40529250	68	2.2	68	78	13	158	21	28	16	34	1.94
40533938--40533986	25	2.0	25	96	4	91	16	12	10	61	1.57
40539739--40539901	40	4.1	39	80	10	177	25	21	27	25	1.99
40542880--40543038	43	3.7	43	81	10	200	33	25	16	24	1.96
40542881--40543038	86	1.8	85	85	9	223	33	25	16	24	1.96
40557909--40557955	23	2.0	23	100	0	94	36	17	12	34	1.87
40562350--40562491	40	3.5	40	83	1	124	27	23	26	21	1.99
40562388--40562517	40	3.3	39	78	11	147	23	23	26	25	2.00
40570360--40570510	40	3.8	40	80	6	164	26	23	27	23	2.00
40572904--40573049	31	4.7	31	93	0	249	30	24	15	29	1.96
40573073--40573206	42	3.2	42	95	0	241	32	18	14	33	1.92
40573354--40573423	25	2.8	25	91	4	106	24	24	27	24	2.00
40574231--40574295	27	2.4	27	79	5	69	23	24	16	35	1.95
40574349--40574456	27	4.0	27	76	16	89	32	6	16	44	1.73
40574353--40574446	27	3.4	27	78	12	93	31	6	17	44	1.73
40574398--40574535	27	5.1	27	77	7	111	31	8	18	41	1.81
40574571--40574683	27	4.2	27	87	2	147	37	7	27	28	1.83
40576671--40576700	15	2.0	15	93	0	51	50	33	13	3	1.58
40580313--40580556	40	6.1	41	89	4	340	26	27	22	23	1.99
40584813--40584852	21	1.9	21	89	0	62	20	35	30	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40584893--40584960	22	3.1	21	70	12	57	13	38	26	22	1.91
40585886--40585946	25	2.5	26	81	10	74	31	11	19	37	1.87
40592685--40592888	46	4.5	45	82	11	197	23	30	20	25	1.98
40592728--40592944	92	2.4	91	82	4	249	22	31	19	25	1.98
40592728--40592936	46	4.6	44	79	11	190	22	31	19	26	1.98
40598703--40598727	13	1.9	13	100	0	50	40	0	12	48	1.40
40599714--40599901	40	4.7	40	79	3	182	22	28	14	35	1.93
40608222--40608338	27	4.4	27	82	7	123	35	14	22	28	1.93
40608234--40608338	53	2.0	54	86	5	151	32	15	22	29	1.95
40608234--40608338	27	3.9	27	86	5	133	32	15	22	29	1.95
40618935--40619143	40	5.2	38	77	8	175	22	28	15	33	1.95
40623827--40623860	17	1.9	17	94	5	59	26	23	38	11	1.89
40623821--40623860	9	4.4	9	90	6	55	25	25	37	12	1.91
40632313--40632370	30	1.9	30	89	0	89	20	12	6	60	1.54
40632507--40632576	29	2.4	28	86	6	95	34	1	1	62	1.13
40632507--40632575	14	4.9	14	75	8	61	33	1	1	63	1.12
40632573--40632612	19	2.0	20	85	4	55	45	5	0	50	1.23
40632568--40632612	20	2.3	19	80	7	54	44	4	0	51	1.21
40632636--40632683	12	4.0	12	89	7	71	29	0	2	68	1.01
40632634--40632707	34	2.2	36	76	9	59	33	1	1	63	1.11
40632598--40632767	23	7.1	23	70	23	88	31	2	2	64	1.19
40632715--40632753	20	2.0	20	89	0	60	28	2	2	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40632634--40632760	25	5.0	26	74	19	101	31	3	1	63	1.19
40641832--40641949	41	3.1	41	60	28	98	32	17	28	21	1.96
40641800--40641963	71	2.3	71	100	0	328	35	17	28	18	1.94
40648998--40649170	40	4.4	40	86	2	226	24	21	27	26	2.00
40648965--40649170	80	2.6	79	81	5	236	25	21	27	25	2.00
40657077--40657262	40	4.7	39	86	7	200	25	22	27	24	1.99
40657110--40657282	40	4.4	40	85	3	226	24	21	27	26	1.99
40657077--40657282	79	2.6	79	83	3	236	25	21	27	25	1.99
40663566--40663787	40	5.6	40	87	4	281	24	26	22	26	2.00
40663566--40663787	119	1.9	119	86	5	324	24	26	22	26	2.00
40668143--40668726	90	6.5	90	94	0	979	30	15	27	26	1.96
40668185--40668691	45	11.3	45	68	15	289	30	15	27	26	1.96
40670410--40670601	40	4.8	40	75	8	151	25	23	27	22	2.00
40670409--40670593	79	2.3	81	79	9	202	25	23	27	23	2.00
40671881--40671913	9	3.8	9	96	4	59	9	0	0	90	0.44
40673330--40673387	30	1.9	30	85	0	80	20	13	6	58	1.58
40673675--40673709	12	3.0	12	95	4	63	31	0	0	68	0.90
40673687--40673732	22	2.2	22	85	11	62	39	2	0	58	1.10
40673741--40673779	20	2.0	20	89	0	60	28	2	2	66	1.18
40673804--40673845	13	3.2	13	82	0	57	38	2	0	59	1.10
40677283--40677349	24	2.8	24	83	2	89	35	22	14	26	1.93
40681428--40681595	40	4.2	40	82	1	176	25	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40684357--40684413	29	2.0	29	96	0	105	38	3	22	35	1.72
40703022--40703096	27	2.8	26	76	15	80	38	20	13	28	1.90
40703090--40703313	27	8.4	26	80	5	191	35	17	19	27	1.95
40703064--40703313	53	4.7	53	76	8	161	35	18	18	27	1.94
40703113--40703313	53	3.8	54	81	2	226	35	17	19	26	1.95
40703089--40703313	107	2.1	107	82	4	276	35	17	19	27	1.95
40703112--40703324	80	2.7	80	79	8	227	34	18	20	27	1.95
40703450--40703501	27	2.0	26	84	3	68	19	23	21	36	1.95
40710608--40710695	45	1.9	47	88	4	135	36	25	14	23	1.93
40711185--40711229	12	3.8	11	80	13	54	28	0	51	20	1.48
40711185--40711236	12	4.3	12	80	4	52	28	0	50	21	1.49
40712642--40712931	27	10.7	27	87	0	391	32	16	14	35	1.90
40712641--40712931	54	5.4	54	89	1	440	32	16	14	35	1.89
40712923--40712990	27	2.5	27	83	9	93	44	17	17	20	1.87
40714956--40714984	15	1.9	15	100	0	58	34	17	6	41	1.76
40718730--40718807	39	2.0	40	87	2	113	23	28	15	33	1.95
40718789--40718850	30	2.1	30	96	0	115	29	22	11	37	1.89
40724760--40724880	40	3.0	39	87	0	161	26	28	22	23	1.99
40729972--40730135	71	2.3	71	100	0	328	18	28	17	35	1.94
40729972--40730169	71	2.8	70	91	3	258	20	28	17	33	1.95
40743311--40743532	40	5.6	40	95	2	333	27	26	22	23	2.00
40747453--40747540	46	1.9	46	81	4	106	10	29	12	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40747828--40747862	12	2.8	12	95	4	61	37	20	25	17	1.94
40762906--40762957	23	2.4	22	77	6	61	50	5	0	44	1.26
40763468--40763497	12	2.5	12	94	0	51	83	0	10	6	0.81
40766673--40766735	32	2.0	32	96	0	117	34	9	42	12	1.76
40768824--40769095	48	5.7	48	79	3	262	29	18	29	22	1.97
40768811--40769093	144	2.0	144	86	2	399	28	18	29	23	1.98
40768824--40769130	96	3.2	96	82	1	339	28	19	29	22	1.98
40768821--40769126	144	2.1	144	83	3	375	29	19	29	21	1.98
40776346--40777006	219	3.0	219	99	0	1313	34	11	19	33	1.89
40777062--40777295	48	4.9	48	82	3	265	26	21	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438