genome.fa.s3.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  206  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63785377--63785498	47	2.6	47	97	0	226	28	20	22	28	1.98
63785553--63785609	9	5.9	9	73	15	51	35	21	8	35	1.84
63785546--63785611	20	3.3	20	95	0	123	31	19	12	36	1.89
63785546--63785600	11	5.4	11	70	16	55	30	20	12	36	1.90
63785648--63785695	25	1.9	25	82	0	60	25	14	25	35	1.94
63786933--63787379	27	16.7	27	85	8	457	40	8	22	28	1.84
63786935--63787371	187	2.3	187	86	6	600	40	8	22	28	1.84
63786935--63787379	54	8.3	53	85	4	547	40	8	22	28	1.84
63786935--63787378	134	3.3	134	84	5	587	40	9	22	28	1.84
63797633--63797663	3	10.3	3	92	0	53	3	0	61	35	1.12
63798136--63798655	258	2.0	258	99	0	1022	39	12	17	30	1.86
63802468--63802512	22	2.0	22	100	0	90	44	0	13	42	1.43
63802473--63802513	13	3.5	13	75	25	54	43	0	12	43	1.41
63812509--63812781	28	9.8	28	74	3	226	24	24	12	38	1.90
63824963--63825378	213	2.0	213	96	0	769	36	18	7	37	1.79
63828059--63828226	40	4.2	40	75	15	161	26	22	26	25	2.00
63828061--63828226	80	2.1	80	86	4	228	25	22	27	24	2.00
63836082--63836249	40	4.2	40	74	15	152	26	21	26	25	1.99
63838524--63838939	213	2.0	213	94	0	724	35	18	8	37	1.81
63842091--63842138	25	1.9	25	86	0	69	33	25	16	25	1.96
63842182--63842240	20	3.0	20	94	0	100	35	11	22	30	1.90
63842290--63842457	24	7.0	24	91	3	250	27	23	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63842649--63842712	31	2.1	31	87	0	92	37	15	23	23	1.93
63851893--63852077	40	4.6	40	78	7	164	23	26	23	26	2.00
63855974--63856075	52	2.0	50	84	3	132	38	27	11	22	1.89
63855974--63856075	25	4.0	25	76	3	96	38	27	11	22	1.89
63861921--63862304	28	13.6	28	77	5	319	26	25	13	35	1.92
63862305--63862368	28	2.3	28	91	0	101	18	29	14	37	1.90
63867562--63867604	10	4.3	10	84	0	59	51	9	0	39	1.34
63867810--63867845	15	2.2	17	90	9	58	41	2	0	55	1.14
63871178--63871230	14	3.7	14	85	5	70	43	5	13	37	1.67
63880288--63880313	13	2.0	13	100	0	52	38	7	7	46	1.61
63880763--63880804	20	2.0	21	90	4	68	50	0	19	30	1.48
63881495--63881602	32	3.3	32	79	8	119	32	11	25	31	1.90
63886972--63887139	32	5.2	32	76	9	169	31	11	23	32	1.91
63886939--63887142	65	3.1	65	88	6	245	33	12	23	31	1.91
63889891--63889943	21	2.5	21	81	0	61	39	18	20	20	1.92
63890790--63890893	38	2.7	38	79	10	106	36	25	20	18	1.94
63890867--63890976	39	2.8	39	88	0	166	30	26	22	20	1.99
63896752--63896906	57	2.7	58	76	7	156	31	22	14	30	1.94
63906977--63907013	19	2.0	19	89	5	58	54	10	2	32	1.49
63907866--63907920	28	1.9	28	81	3	65	38	1	1	58	1.20
63907866--63907909	20	2.3	18	80	11	52	36	2	2	59	1.23
63908862--63908886	4	6.2	4	100	0	50	24	76	0	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63914994--63915020	13	2.1	13	100	0	54	22	0	0	77	0.76
63917158--63917199	21	2.0	22	85	4	59	11	28	26	33	1.92
63923771--63923804	17	2.1	16	94	5	59	0	26	0	73	0.83
63927684--63927712	14	2.1	14	100	0	58	44	6	13	34	1.71
63928215--63928241	10	2.7	10	100	0	54	29	0	11	59	1.32
63928696--63928781	43	2.0	43	84	4	111	22	18	31	27	1.97
63932373--63932540	40	4.2	39	80	5	160	25	26	22	25	2.00
63932373--63932540	80	2.1	80	83	5	207	25	26	22	25	2.00
63940452--63940659	40	5.2	39	84	4	231	25	27	22	25	2.00
63960294--63960385	23	3.7	23	72	16	60	31	13	27	28	1.93
63964750--63964931	64	2.8	64	80	6	217	29	17	30	23	1.96
63966009--63966044	2	18.0	2	100	0	72	50	0	0	50	1.00
63969042--63969191	67	2.2	67	81	8	171	32	17	28	21	1.96
63969066--63969249	67	2.8	64	77	8	194	29	17	29	22	1.97
63979147--63979307	38	4.2	39	91	4	254	22	20	32	24	1.98
63979164--63979343	38	4.6	40	86	2	154	22	22	32	22	1.98
63986903--63987062	38	4.2	39	88	5	245	23	19	33	24	1.97
63986901--63987054	77	2.0	76	91	6	249	25	19	32	22	1.97
63986903--63987093	38	4.9	38	87	3	231	23	20	32	23	1.98
63986920--63987092	77	2.2	76	86	5	231	23	21	32	21	1.98
64000123--64000360	49	4.8	49	80	4	253	30	27	17	24	1.97
64000178--64000358	100	1.8	101	90	1	292	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64001222--64001712	245	2.0	245	98	0	955	29	21	15	33	1.94
64002713--64002840	37	3.4	37	96	1	229	25	32	17	23	1.97
64002880--64003031	48	3.2	48	86	0	232	30	26	6	35	1.82
64002865--64003178	96	3.3	97	79	10	274	31	27	7	33	1.84
64003024--64003216	47	3.9	49	91	4	327	31	27	8	32	1.86
64003023--64003213	51	3.9	50	92	7	329	30	28	8	32	1.87
64003023--64003213	96	2.0	95	96	2	337	30	28	8	32	1.87
64003018--64003219	49	4.1	48	89	6	325	31	27	7	33	1.85
64006232--64006382	40	3.8	39	80	6	153	27	23	27	22	1.99
64006269--64006398	40	3.3	39	80	4	161	24	23	27	24	2.00
64013783--64014014	49	4.7	49	83	3	302	29	27	18	24	1.98
64016066--64016104	16	2.4	16	87	8	53	48	0	10	41	1.37
64016868--64017025	40	4.0	40	88	0	235	15	27	20	36	1.92
64016887--64017097	20	10.4	20	66	9	104	14	27	19	37	1.91
64017002--64017049	24	2.0	24	95	0	87	8	31	20	39	1.82
64016964--64017089	64	2.0	64	93	0	216	13	27	19	38	1.90
64017026--64017117	40	2.3	40	84	3	123	15	29	17	38	1.90
64016924--64017117	104	1.9	104	87	2	291	14	27	19	38	1.91
64019506--64019774	47	5.7	47	91	3	380	31	7	31	29	1.85
64019506--64019774	96	2.8	95	89	2	391	31	7	31	29	1.85
64021884--64022168	40	7.2	40	89	4	416	25	19	28	26	1.99
64025638--64025908	49	5.7	49	88	5	376	31	7	30	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64033701--64033751	27	1.9	26	84	4	66	35	17	27	19	1.94
64038083--64038235	40	3.8	40	78	9	143	22	23	28	25	2.00
64041238--64041271	18	1.9	18	94	5	61	14	14	11	58	1.63
64043328--64043378	27	1.9	26	84	4	66	35	17	27	19	1.94
64046107--64046135	12	2.3	13	94	5	51	65	6	6	20	1.40
64048214--64048249	16	2.2	16	95	0	63	22	2	38	36	1.69
64054657--64054786	40	3.3	39	76	8	136	23	27	23	24	2.00
64054673--64054824	40	3.8	40	78	6	148	22	26	23	27	1.99
64054673--64054822	80	1.9	80	83	8	198	22	26	24	27	1.99
64056887--64057029	70	2.0	70	100	0	286	48	12	9	29	1.73
64058130--64058223	38	2.4	38	84	7	109	37	9	9	43	1.70
64058208--64058290	39	2.1	38	84	4	103	30	10	12	46	1.75
64059630--64059689	30	2.0	30	83	0	75	35	13	21	30	1.92
64060501--64060697	54	3.6	54	85	4	254	35	17	25	21	1.95
64062047--64062124	10	7.5	10	69	16	52	61	0	2	35	1.10
64062062--64062124	18	3.7	17	71	14	58	61	0	3	34	1.12
64062058--64062124	9	7.7	9	73	17	52	61	0	2	35	1.12
64062051--64062155	20	5.2	20	70	17	76	60	0	2	37	1.12
64062050--64062121	31	2.2	33	85	7	94	59	0	2	37	1.12
64062052--64062153	40	2.6	39	75	10	100	59	0	2	37	1.12
64062075--64062128	23	2.4	23	84	6	67	61	0	3	35	1.14
64062092--64062147	22	2.5	22	83	13	71	60	0	3	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64065875--64066079	40	5.2	39	83	4	216	26	27	20	25	1.99
64070991--64071187	54	3.6	54	81	4	227	35	16	25	22	1.94
64072316--64072358	21	2.0	21	95	0	77	46	13	13	25	1.81
64075525--64075743	48	4.6	48	74	10	168	25	30	17	26	1.97
64075577--64075876	46	6.4	47	74	12	217	23	29	18	28	1.98
64075525--64075876	98	3.7	95	74	13	298	23	29	19	27	1.98
64083375--64083589	46	4.6	46	78	11	188	23	27	18	29	1.98
64083315--64083589	94	2.9	96	77	8	283	25	26	19	29	1.98
64086462--64086541	24	3.3	24	87	6	101	28	23	18	28	1.98
64086593--64086631	20	2.0	20	94	0	69	33	20	7	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438