genome.fa.s3.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  134  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39873504--39873548	23	1.9	24	90	4	74	24	22	11	42	1.86
39873674--39873871	55	3.7	54	80	10	210	21	24	17	35	1.95
39887966--39888071	40	3.0	34	87	10	142	20	28	28	22	1.99
39887999--39888102	40	2.6	40	92	1	165	24	25	27	22	1.99
39895020--39895074	29	1.9	28	88	3	83	16	20	41	21	1.90
39904068--39904163	29	3.3	29	88	5	142	32	31	12	23	1.92
39904781--39904876	29	3.3	29	85	7	133	27	12	29	31	1.93
39909068--39909098	16	1.9	16	93	0	53	48	12	16	22	1.80
39909312--39909407	29	3.3	29	92	0	165	27	11	29	32	1.91
39916007--39916109	48	2.2	47	82	1	116	32	16	27	24	1.96
39916093--39916227	48	2.8	48	83	4	157	25	20	32	20	1.97
39928704--39928871	40	4.2	40	77	3	151	22	26	23	27	2.00
39931133--39931196	33	2.0	33	85	11	89	29	28	18	23	1.98
39934270--39934542	48	5.7	48	80	3	277	30	19	28	21	1.98
39936261--39936412	40	3.8	39	81	6	153	22	26	24	26	2.00
39944313--39944396	9	9.6	9	76	5	73	41	21	9	27	1.84
39944313--39944396	26	3.2	27	83	5	100	41	21	9	27	1.84
39944404--39944501	17	5.4	17	63	13	52	48	14	5	31	1.65
39944395--39944506	37	3.0	37	86	3	172	44	15	7	33	1.73
39946924--39946982	21	2.8	21	85	15	70	55	3	0	40	1.16
39946933--39946982	21	2.5	20	90	9	77	56	4	0	40	1.18
39947030--39947063	11	3.0	11	83	8	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39947627--39947656	14	2.1	14	93	0	51	23	3	6	66	1.30
39951286--39951361	30	2.5	30	89	2	107	39	13	17	30	1.87
39970853--39971044	50	3.8	50	78	2	172	27	27	18	26	1.98
39975604--39975659	23	2.5	22	79	5	58	35	21	12	30	1.90
39981095--39981129	17	2.1	17	94	0	61	45	5	25	22	1.74
39982122--39982182	32	1.9	32	96	0	113	37	6	18	37	1.76
39986134--39986184	26	2.0	26	81	14	61	35	0	5	58	1.22
39986793--39986844	26	2.0	27	84	3	70	73	3	5	17	1.19
39987886--39987910	12	2.1	12	100	0	50	16	24	20	40	1.91
39987888--39988000	45	2.5	45	80	5	131	24	20	15	39	1.91
39989220--39989286	34	2.0	34	96	0	125	25	22	31	20	1.98
39993792--39994023	40	5.8	40	90	0	365	25	29	20	24	1.99
39993766--39994023	80	3.2	80	89	1	372	26	30	20	23	1.98
40002196--40002241	24	1.9	24	100	0	92	26	13	21	39	1.90
40002263--40002297	13	2.7	13	95	0	61	25	2	14	57	1.51
40004907--40004946	11	3.5	11	83	6	53	57	0	0	42	0.98
40005516--40005547	14	2.3	14	94	0	55	84	0	12	3	0.74
40023337--40023380	21	2.1	21	95	0	79	25	9	29	36	1.86
40030415--40030683	46	5.7	47	78	8	239	28	19	28	22	1.98
40030462--40030686	93	2.4	94	80	7	242	29	20	28	22	1.98
40030420--40030683	140	1.9	141	82	5	338	29	19	28	22	1.98
40030414--40030685	47	5.8	46	75	10	216	29	19	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40039239--40039324	42	2.0	42	100	0	172	31	13	16	38	1.88
40039597--40039639	10	4.3	10	93	0	59	48	4	2	44	1.36
40039604--40039640	2	18.5	2	94	0	65	48	2	0	48	1.15
40041036--40041084	21	2.4	21	96	3	91	48	12	14	24	1.77
40046248--40046542	154	1.9	154	91	1	484	28	25	20	25	1.99
40047082--40047284	48	4.4	48	69	10	145	28	21	21	29	1.98
40052557--40052637	42	1.9	42	97	0	153	29	6	16	48	1.70
40057367--40057404	20	1.9	20	88	0	58	34	2	10	52	1.50
40059018--40059086	28	2.5	28	95	2	122	43	27	10	18	1.82
40065314--40065351	20	1.9	20	88	0	58	34	2	10	52	1.50
40066968--40067035	27	2.5	28	90	7	113	44	26	10	19	1.82
40068207--40068250	19	2.3	19	76	0	52	34	4	15	45	1.67
40068267--40068351	42	2.0	42	95	0	152	29	4	15	50	1.64
40069656--40069709	28	1.9	28	92	0	90	29	22	25	22	1.99
40070103--40070150	22	2.2	22	100	0	96	29	18	25	27	1.98
40070519--40071159	27	23.9	26	78	8	506	30	9	19	40	1.84
40070545--40071159	54	11.4	54	82	3	623	30	9	19	40	1.84
40074245--40074304	30	2.0	30	87	6	86	36	8	26	28	1.85
40081491--40081550	30	2.0	30	87	6	86	36	8	26	28	1.85
40084925--40085183	129	2.0	129	81	4	299	31	27	16	24	1.96
40084913--40085155	43	5.7	43	82	0	261	31	27	16	24	1.96
40084925--40085183	86	3.0	86	80	1	277	31	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40089073--40089222	41	3.6	41	77	10	162	22	22	28	27	1.99
40089053--40089222	41	4.2	40	74	18	161	22	22	27	27	1.99
40095012--40095109	43	2.3	43	75	7	99	36	27	11	24	1.89
40095103--40095247	50	2.9	50	79	5	152	21	29	18	30	1.97
40095528--40095619	46	2.0	46	100	0	184	45	19	8	26	1.79
40097534--40097682	40	3.8	38	80	12	142	26	24	27	21	1.99
40097573--40097698	40	3.2	40	81	2	146	23	24	28	23	1.99
40105511--40105661	40	3.8	40	79	6	155	26	23	27	22	2.00
40105548--40105677	40	3.2	40	80	2	154	23	23	27	24	2.00
40109234--40109319	40	2.2	39	89	2	127	30	29	16	24	1.96
40112531--40112594	30	2.1	30	100	0	128	34	0	21	43	1.53
40116364--40116750	118	3.3	118	81	0	472	31	19	13	35	1.91
40126606--40126684	7	11.3	7	77	0	68	43	31	3	21	1.70
40126614--40126673	21	2.9	21	87	0	84	46	28	1	23	1.62
40126822--40126889	15	4.6	14	78	8	64	47	33	0	19	1.50
40126820--40126876	30	1.9	29	85	3	78	47	33	0	19	1.50
40126820--40126953	29	4.6	29	76	6	94	52	29	0	17	1.45
40126851--40126896	22	2.1	22	84	8	58	54	28	0	17	1.43
40126881--40126959	7	11.0	7	72	10	61	58	26	0	15	1.38
40126887--40126968	22	3.8	22	73	9	69	58	23	0	18	1.39
40127027--40127144	41	2.9	40	81	7	139	20	21	16	41	1.90
40127841--40127892	27	1.9	27	84	7	70	30	17	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40134411--40134587	61	2.9	60	87	4	241	49	3	2	43	1.35
40134413--40134584	60	2.8	61	87	4	233	50	4	2	43	1.36
40136903--40137315	212	1.9	212	96	0	754	38	11	13	35	1.81
40139201--40139344	55	2.6	54	73	5	137	38	18	23	18	1.93
40148013--40148219	53	3.8	53	74	3	189	38	17	23	19	1.93
40149648--40149755	22	5.0	22	78	10	89	25	24	21	29	1.99
40149628--40149741	23	5.2	22	76	11	83	25	22	19	32	1.97
40152398--40152766	56	6.6	56	92	0	594	27	13	24	34	1.93
40153297--40153352	26	2.1	27	83	9	80	35	7	17	39	1.78
40153306--40153359	26	2.1	26	100	0	108	35	7	14	42	1.74
40154325--40154354	14	2.1	14	100	0	60	43	13	6	36	1.70
40160329--40160400	19	3.7	18	74	18	65	30	5	0	63	1.17
40160331--40160402	27	2.7	26	80	8	74	30	5	0	63	1.17
40161651--40161756	25	4.3	25	76	5	83	36	19	21	21	1.95
40168420--40168522	27	3.8	27	85	0	125	31	25	6	36	1.82
40168402--40168548	54	2.7	54	75	0	123	34	22	7	36	1.82
40168515--40168867	27	13.0	27	76	7	166	37	20	9	32	1.85
40168509--40168884	54	6.9	54	73	7	199	37	21	9	31	1.85
40168734--40168887	27	5.7	27	79	6	96	41	22	7	28	1.80
40168665--40168913	81	3.1	82	74	9	208	39	22	9	29	1.85
40168905--40168978	27	2.7	27	76	12	71	37	20	20	21	1.94
40169682--40169738	20	2.9	21	87	10	77	38	8	19	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40169788--40169871	26	3.3	26	83	8	104	30	19	23	26	1.98
40170004--40170095	42	2.2	42	90	3	141	30	14	20	34	1.92
40172045--40172132	44	2.0	44	90	0	140	35	12	13	38	1.83
40172976--40173473	37	13.3	37	86	4	597	12	19	33	35	1.89
40172978--40173473	75	6.6	75	86	3	606	12	19	33	35	1.88
40172976--40173473	112	4.4	112	92	1	746	12	19	33	35	1.89
40182365--40182444	28	2.9	28	83	5	99	31	27	12	28	1.93
40182766--40182807	21	2.0	21	100	0	84	38	19	4	38	1.73
40185192--40185237	13	3.4	14	82	11	60	56	13	10	19	1.66
40186354--40186381	10	2.8	10	100	0	56	17	0	28	53	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438