genome.fa.s3.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  301  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94088670--94088708	14	2.9	14	92	3	62	43	5	0	51	1.24
94088768--94088799	15	2.1	16	94	5	57	34	0	3	62	1.11
94101454--94101478	7	3.6	7	100	0	50	28	0	0	72	0.86
94101796--94101824	14	2.0	15	93	6	51	68	6	20	3	1.27
94101981--94102019	15	2.6	15	95	0	69	38	10	12	38	1.78
94102701--94102740	13	2.9	14	85	7	55	62	0	10	27	1.27
94103111--94103151	21	2.0	21	100	0	82	14	29	26	29	1.95
94103111--94103162	21	2.5	21	90	0	68	17	30	23	28	1.97
94104806--94104836	7	4.4	7	100	0	62	45	41	0	12	1.42
94105542--94105645	26	4.0	26	89	0	154	33	8	22	35	1.85
94112473--94112532	29	2.1	28	81	9	68	50	3	18	28	1.63
94113036--94113271	43	5.5	43	93	0	382	26	16	27	29	1.97
94113036--94113301	43	6.2	43	90	0	379	26	16	26	30	1.96
94113260--94113410	56	2.7	56	86	2	205	28	13	23	34	1.93
94113359--94113449	43	2.1	43	85	0	119	28	12	25	34	1.92
94114693--94114726	2	17.0	2	100	0	68	50	0	0	50	1.00
94115592--94115735	31	4.7	31	84	5	179	27	22	17	31	1.96
94115882--94115975	25	3.8	25	90	1	136	25	23	25	25	2.00
94116742--94116843	27	3.8	27	70	10	82	25	22	17	34	1.96
94116837--94117146	27	11.4	27	79	3	219	30	10	20	39	1.86
94116839--94117146	54	5.7	52	78	8	249	29	10	20	39	1.85
94116944--94117147	80	2.5	80	82	7	252	29	9	21	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94117095--94117153	27	2.2	27	81	6	66	32	8	16	42	1.79
94119384--94119527	31	4.7	31	86	5	188	28	24	17	29	1.97
94119733--94119838	25	4.4	22	81	10	77	26	23	22	27	2.00
94119746--94119838	25	3.8	25	85	4	118	26	23	24	24	2.00
94120742--94121051	27	11.4	27	79	3	219	30	9	20	39	1.85
94120744--94121051	54	5.7	52	78	8	249	29	9	20	39	1.84
94120827--94121052	81	2.8	79	82	6	267	28	8	21	40	1.83
94121000--94121058	27	2.2	27	81	6	66	32	8	16	42	1.79
94122079--94122111	2	16.5	2	100	0	66	48	0	0	51	1.00
94129938--94130092	43	3.7	43	77	7	122	32	24	14	27	1.95
94147013--94147047	18	2.1	17	89	10	54	14	34	34	17	1.90
94149278--94149497	40	5.6	40	82	4	250	25	26	23	25	2.00
94161471--94161566	48	2.0	48	93	0	165	29	5	22	42	1.75
94162651--94162703	26	2.0	26	100	0	106	15	18	18	47	1.83
94165483--94165616	68	2.0	68	84	0	178	29	17	25	27	1.97
94183469--94183538	31	2.3	31	82	7	81	45	14	10	30	1.77
94185039--94185117	3	27.3	3	80	12	76	2	32	0	64	1.07
94185044--94185125	26	3.1	27	77	13	89	3	29	0	67	1.08
94185455--94185492	2	19.0	2	100	0	76	50	0	0	50	1.00
94185512--94185539	14	2.0	14	100	0	56	50	7	14	28	1.69
94187571--94187630	30	2.0	30	100	0	120	16	23	3	56	1.55
94188830--94188871	9	4.6	9	80	16	50	76	2	21	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94189913--94189944	6	5.3	6	92	0	55	15	31	31	21	1.95
94189999--94190071	18	3.7	18	74	25	76	52	1	24	21	1.55
94189985--94190070	42	2.0	42	95	0	154	50	3	23	23	1.65
94189989--94190056	21	3.2	21	69	29	54	48	4	25	22	1.69
94190051--94190112	32	1.9	33	83	3	81	50	3	22	24	1.64
94209976--94210141	45	3.6	45	85	1	206	44	17	20	17	1.87
94211655--94211699	21	2.2	21	88	7	67	55	22	13	8	1.65
94211705--94211816	21	5.4	21	73	2	91	41	13	25	19	1.88
94214880--94214930	15	3.0	18	71	26	56	39	7	1	50	1.42
94221986--94222088	29	3.6	29	81	2	118	21	16	33	29	1.95
94232297--94232342	18	2.5	18	86	10	58	58	0	0	41	0.98
94232302--94232343	7	6.4	7	83	10	54	59	0	0	40	0.97
94236253--94236285	2	16.5	2	100	0	66	51	0	0	48	1.00
94236409--94236447	19	2.1	19	95	0	69	38	35	10	15	1.81
94241108--94241211	26	4.0	26	89	0	163	34	24	8	32	1.86
94251400--94251575	46	3.8	46	78	12	198	20	21	29	28	1.98
94251397--94251567	93	1.8	93	92	0	288	20	21	29	28	1.98
94254099--94254316	46	4.8	45	79	6	199	25	21	30	22	1.98
94254150--94254353	46	4.5	43	80	11	171	25	21	29	24	1.99
94263700--94263817	41	3.1	41	60	28	98	32	17	28	21	1.96
94263668--94263831	71	2.3	71	100	0	328	35	17	28	18	1.94
94269055--94269156	42	2.4	42	82	6	118	43	18	23	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94269093--94269164	21	3.4	21	67	7	65	43	18	26	12	1.85
94269078--94269185	42	2.6	42	83	5	137	42	17	26	12	1.86
94272031--94272062	13	2.5	13	100	0	64	0	21	46	31	1.52
94272187--94272238	24	2.2	24	96	0	95	28	21	9	40	1.84
94273159--94273229	24	3.0	24	87	2	99	30	15	25	28	1.96
94275400--94275694	115	2.6	112	82	5	315	29	16	22	32	1.95
94276270--94276553	90	3.2	90	88	1	446	28	7	13	51	1.67
94276270--94276596	90	3.7	89	85	2	433	27	6	13	52	1.63
94276218--94276639	179	2.4	175	79	5	497	27	5	13	54	1.60
94277229--94277301	21	3.6	19	72	17	58	23	9	0	67	1.20
94277251--94277294	22	2.0	21	83	12	54	22	9	0	68	1.18
94277272--94277328	15	3.9	14	77	18	53	24	8	1	64	1.31
94277338--94277407	22	3.2	22	66	8	52	38	1	8	51	1.41
94277322--94277429	44	2.5	44	92	0	180	37	1	9	51	1.45
94281032--94281092	20	3.0	20	71	4	59	36	19	29	14	1.92
94281006--94281118	41	2.8	41	82	1	111	38	17	25	17	1.92
94281011--94281201	42	4.6	42	77	7	140	42	17	23	16	1.88
94281118--94281182	21	3.1	21	63	8	51	44	18	18	18	1.87
94283438--94283729	123	2.5	118	85	7	401	36	16	16	30	1.91
94288288--94288319	15	2.1	15	100	0	64	43	18	12	25	1.85
94310602--94310731	40	3.2	40	80	4	147	24	27	23	23	2.00
94314075--94314099	12	2.1	12	100	0	50	36	0	24	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94317200--94317264	21	3.2	21	74	12	82	12	26	21	40	1.88
94317182--94317270	39	2.3	39	100	0	178	13	24	23	38	1.91
94322791--94323361	70	8.2	70	80	0	451	26	18	26	28	1.98
94322758--94323262	140	3.6	139	78	2	501	26	18	26	28	1.98
94322791--94323253	210	2.2	209	80	1	512	26	18	25	28	1.98
94322848--94323361	210	2.4	210	80	1	530	26	18	26	29	1.98
94324649--94324790	40	3.5	40	74	3	124	38	16	23	21	1.93
94325910--94326145	70	3.4	70	82	2	267	25	16	26	30	1.97
94328398--94328587	39	4.8	40	91	3	305	23	23	28	24	1.99
94328394--94328587	79	2.5	79	89	5	311	24	22	28	24	2.00
94336421--94336652	40	5.8	40	91	1	367	22	22	28	25	1.99
94338232--94338270	21	2.0	21	85	10	55	38	7	12	41	1.72
94340361--94340393	12	2.6	13	85	9	50	9	45	0	45	1.35
94341462--94341526	28	2.3	28	83	0	85	32	26	10	30	1.90
94341632--94341721	28	3.2	27	84	7	110	20	23	23	33	1.97
94341632--94341746	55	2.1	56	82	8	137	19	23	21	35	1.96
94342172--94342210	19	2.1	19	85	0	51	15	5	7	71	1.26
94342790--94342957	46	3.6	44	79	10	160	24	30	18	26	1.98
94345593--94345620	2	14.0	2	100	0	56	50	0	0	50	1.00
94346270--94346391	23	5.2	23	75	9	104	29	19	23	27	1.98
94346288--94346391	23	4.4	24	77	9	106	31	18	24	25	1.97
94348291--94348323	16	2.1	16	94	0	57	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94350802--94350866	26	2.4	26	80	14	69	52	0	3	44	1.16
94350882--94350918	18	2.1	17	90	5	56	35	0	18	45	1.50
94352288--94352328	3	13.7	3	89	0	64	31	36	2	29	1.71
94353750--94354029	72	3.9	72	90	2	413	54	15	6	22	1.65
94354461--94354544	18	4.7	18	89	0	123	38	10	15	35	1.82
94355659--94355712	26	2.1	26	96	0	99	44	20	12	22	1.85
94356273--94356490	41	5.3	41	82	3	226	34	22	20	22	1.96
94356273--94356491	82	2.7	81	85	4	271	35	22	20	21	1.96
94357512--94357550	19	2.1	19	90	4	62	46	2	2	48	1.29
94361794--94361885	43	2.1	44	82	6	116	26	20	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438