genome.fa.s3.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  155  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47042787--47042838	18	2.9	18	88	0	77	48	11	19	21	1.80
47050806--47050859	27	2.0	27	100	0	108	29	7	29	33	1.85
47051363--47051495	49	2.7	50	80	6	148	29	20	26	24	1.99
47059709--47059794	40	2.2	40	91	0	136	23	30	25	20	1.99
47059725--47059833	40	2.7	41	84	9	129	21	28	26	23	1.99
47061114--47061151	18	2.1	18	90	0	58	0	13	5	81	0.85
47062242--47062362	49	2.5	49	83	4	147	28	16	29	25	1.97
47064387--47064429	19	2.3	19	81	14	54	41	0	20	37	1.53
47064987--47065166	46	3.8	46	75	11	177	22	19	28	30	1.98
47067964--47068169	46	4.5	45	82	7	222	26	20	29	23	1.99
47067964--47068169	90	2.3	91	82	6	240	26	20	29	23	1.99
47072751--47072884	40	3.3	40	91	6	218	21	23	27	26	1.99
47074202--47074372	93	1.8	93	96	0	315	28	29	21	21	1.98
47074194--47074369	46	3.8	46	80	12	225	28	28	21	21	1.98
47075972--47076015	22	2.0	21	83	16	54	31	18	13	36	1.90
47082458--47082566	40	2.7	40	84	5	148	27	22	25	24	2.00
47082825--47082868	22	2.0	21	83	16	54	31	18	13	36	1.90
47096670--47096728	26	2.3	27	79	8	68	22	22	20	35	1.96
47104050--47104082	2	16.5	2	100	0	66	48	0	0	51	1.00
47105811--47105883	28	2.6	28	93	2	128	26	31	15	27	1.95
47105753--47105883	29	4.6	29	81	2	131	24	32	17	25	1.97
47113407--47113516	42	2.7	40	89	9	161	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47122585--47122792	40	5.2	39	85	1	227	25	25	22	26	2.00
47122585--47122792	80	2.6	80	84	1	256	25	25	22	26	2.00
47130528--47130735	40	5.2	39	85	1	227	25	25	22	26	2.00
47130528--47130735	80	2.6	80	84	1	256	25	25	22	26	2.00
47137072--47137238	43	3.9	43	71	8	135	32	23	14	28	1.94
47139490--47139660	93	1.8	93	94	0	306	27	28	22	21	1.99
47139485--47139657	46	3.7	46	77	13	201	28	27	21	21	1.99
47140080--47140139	30	2.0	30	86	0	84	33	25	5	36	1.78
47147123--47147273	43	3.5	43	81	5	164	35	23	13	27	1.92
47153946--47154148	47	4.3	47	87	2	309	31	9	31	28	1.88
47153946--47154148	94	2.2	94	93	0	352	31	9	31	28	1.88
47156263--47156344	39	2.1	39	97	0	155	54	14	4	25	1.60
47156275--47156337	19	3.3	19	67	20	58	53	12	6	26	1.62
47165634--47165735	27	3.8	27	84	0	123	35	21	25	17	1.95
47165624--47165816	27	7.1	27	74	12	103	33	19	26	20	1.97
47165624--47165788	54	3.1	53	76	6	152	33	19	27	20	1.96
47165634--47165831	81	2.4	80	79	3	189	35	19	25	19	1.95
47165768--47165836	27	2.6	27	78	0	75	39	18	23	18	1.93
47168385--47168443	24	2.5	24	76	15	61	27	20	15	37	1.92
47171965--47172007	22	2.0	22	100	0	86	23	9	13	53	1.69
47171917--47172065	80	1.9	80	95	0	271	33	8	17	40	1.80
47175713--47175890	40	4.5	40	90	3	254	25	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47179078--47179260	40	4.6	40	79	6	176	24	24	27	24	2.00
47179078--47179262	79	2.3	81	82	7	218	24	23	27	24	2.00
47181081--47181208	67	1.9	67	88	0	193	30	27	21	20	1.98
47188508--47188689	40	4.6	39	79	8	172	23	27	24	24	2.00
47188506--47188690	79	2.3	81	83	7	227	23	27	24	24	2.00
47199402--47199497	40	2.4	41	83	11	119	26	29	16	28	1.97
47204003--47204310	40	7.7	40	92	2	521	25	27	22	24	2.00
47217678--47217849	93	1.8	93	96	0	317	27	29	21	20	1.98
47217670--47217845	46	3.8	46	80	12	225	28	28	21	21	1.98
47220227--47220315	30	3.0	30	80	8	101	57	15	16	10	1.65
47220227--47220306	15	5.4	15	80	7	92	58	13	17	10	1.62
47220238--47220315	15	5.2	15	78	9	79	56	15	16	11	1.67
47223256--47223428	46	3.8	46	79	14	214	28	29	21	20	1.98
47223264--47223433	91	1.8	92	94	2	306	27	30	21	20	1.98
47227384--47227456	24	3.0	24	97	0	137	46	9	0	43	1.36
47227899--47227927	2	14.5	2	100	0	58	0	0	48	51	1.00
47231471--47231564	41	2.2	43	81	10	115	22	26	20	30	1.98
47236163--47236232	28	2.5	28	86	4	97	28	15	27	28	1.96
47240265--47240365	40	2.4	42	79	14	111	28	28	12	29	1.93
47242800--47243248	27	16.6	27	81	2	429	38	20	9	31	1.86
47242800--47243221	54	7.8	54	83	1	488	38	21	9	31	1.85
47243233--47243515	27	10.6	27	86	4	358	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47243206--47243533	54	6.1	54	83	3	369	33	18	21	26	1.96
47242800--47243328	81	6.6	80	76	9	366	37	20	11	30	1.89
47243206--47243533	80	4.1	80	83	4	385	33	18	21	26	1.96
47243963--47244024	22	2.9	21	80	7	70	22	22	20	33	1.97
47244183--47244256	27	2.8	27	85	2	87	16	22	22	37	1.93
47244403--47244524	19	7.5	19	59	32	59	18	14	15	50	1.78
47244393--47244581	6	30.3	6	69	22	106	18	15	15	50	1.79
47244393--47244567	31	5.6	31	92	0	260	18	16	15	50	1.79
47262195--47262282	45	2.0	45	93	0	149	37	17	11	34	1.85
47266175--47266346	46	3.8	46	77	8	190	27	28	20	22	1.99
47266183--47266351	90	1.8	92	91	3	279	27	28	21	22	1.99
47268731--47268808	15	5.4	14	80	7	77	58	14	17	8	1.60
47268742--47268817	15	5.2	15	72	12	68	56	15	17	10	1.66
47271732--47271858	45	2.8	46	92	3	213	29	28	21	20	1.98
47271737--47271876	45	3.1	45	75	18	123	30	27	21	20	1.98
47274999--47275080	15	5.6	15	75	13	73	12	17	13	57	1.65
47274990--47275075	29	3.0	29	80	10	86	10	17	16	55	1.68
47276526--47276598	28	2.6	28	93	2	128	26	31	15	27	1.95
47276468--47276598	29	4.6	29	81	2	131	24	32	17	25	1.97
47284256--47284328	28	2.6	28	93	2	128	26	31	15	27	1.95
47284198--47284328	29	4.6	29	81	2	131	24	32	17	25	1.97
47291988--47292060	28	2.6	28	93	2	128	26	31	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47291930--47292060	29	4.6	29	81	2	131	24	32	17	25	1.97
47295141--47295179	2	19.5	2	100	0	78	51	0	0	48	1.00
47303393--47303496	27	3.9	26	83	6	127	19	25	19	36	1.95
47303393--47303496	54	1.9	53	86	5	147	19	25	19	36	1.95
47305387--47305436	15	3.0	15	83	16	55	44	2	14	40	1.56
47305404--47305443	20	2.0	20	90	9	64	42	5	12	40	1.64
47305779--47305892	18	6.4	18	73	6	61	40	11	13	35	1.80
47307523--47307580	30	1.9	30	92	0	98	32	12	27	27	1.92
47307923--47308235	49	6.6	47	71	13	171	29	19	28	22	1.98
47308994--47309124	55	2.4	55	90	0	208	21	19	32	26	1.97
47308994--47309145	55	2.8	54	87	4	171	21	19	34	24	1.97
47310278--47311000	361	2.0	360	95	0	1311	32	15	28	23	1.95
47315402--47315444	20	2.2	19	83	8	50	62	2	6	27	1.33
47317835--47317875	19	2.1	20	86	4	57	51	4	14	29	1.63
47318713--47318935	49	4.7	47	75	9	177	27	21	27	22	1.99
47327079--47327161	43	1.9	43	95	0	148	31	32	18	18	1.94
47346148--47346359	23	9.0	24	92	3	326	27	21	22	27	1.99
47346148--47346360	94	2.3	94	93	2	356	27	21	23	27	1.99
47346417--47346473	9	5.9	9	73	15	51	35	21	8	35	1.84
47346405--47346475	20	3.5	20	94	0	124	32	21	11	35	1.89
47346410--47346464	11	5.4	11	70	16	55	30	20	12	36	1.90
47347773--47348034	27	9.7	27	86	4	323	40	8	23	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47347774--47348034	81	3.2	81	85	5	366	39	8	23	28	1.83
47354443--47354516	29	2.6	29	86	4	96	27	32	14	25	1.95
47362491--47362564	29	2.6	29	86	4	96	27	32	14	25	1.95
47371739--47371833	50	1.9	50	95	0	172	31	21	11	35	1.89
47373783--47373948	42	3.9	42	75	6	127	30	25	16	27	1.97
47376322--47376399	25	3.2	25	66	23	76	32	30	3	33	1.76
47376271--47376587	47	6.7	47	86	7	433	29	31	7	32	1.84
47376271--47376587	96	3.3	94	87	6	442	29	31	7	32	1.84
47380324--47380544	43	5.1	43	96	0	388	31	32	21	14	1.93
47380527--47380738	40	5.2	42	82	4	211	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438