genome.fa.s3.2.7.7.80.10.50.1000.335.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  335  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104878356--104878586	54	4.3	54	76	3	203	26	22	13	37	1.91
104878888--104879022	54	2.5	54	79	0	144	26	19	13	40	1.88
104879027--104879176	54	2.8	54	81	4	167	30	19	12	38	1.88
104878900--104879167	137	2.0	137	80	1	304	28	19	13	38	1.89
104879505--104879640	54	2.5	54	78	2	148	27	18	16	37	1.92
104880125--104880251	54	2.4	53	77	7	116	31	18	14	35	1.91
104880581--104880711	54	2.4	54	81	6	140	28	16	12	42	1.84
104881008--104881071	24	2.6	24	87	5	83	28	12	14	45	1.81
104881474--104881650	54	3.3	54	78	3	185	24	18	16	40	1.91
104881541--104881644	55	1.9	55	81	0	127	24	17	16	42	1.88
104881638--104881789	54	2.8	54	76	5	164	29	20	11	38	1.87
104885615--104886036	214	2.0	213	92	1	702	37	9	23	29	1.87
104888393--104888514	54	2.3	54	79	0	127	42	15	18	23	1.88
104888466--104888597	53	2.5	54	75	8	135	38	13	20	27	1.90
104888700--104888958	54	4.8	54	78	2	216	27	16	15	40	1.88
104888700--104888965	108	2.5	108	81	1	291	26	17	15	40	1.89
104889241--104889416	54	3.3	54	85	1	219	28	20	11	39	1.88
104889268--104889358	30	3.2	30	62	23	79	27	20	13	38	1.90
104888813--104890020	451	2.7	450	78	6	1255	32	16	18	33	1.93
104889662--104889868	54	3.8	54	83	1	209	28	21	13	37	1.90
104891162--104891207	17	2.7	17	96	0	83	17	45	26	10	1.81
104892629--104892659	15	2.1	15	100	0	62	25	32	25	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104893049--104893347	54	5.5	54	74	4	181	26	17	15	41	1.88
104893084--104893378	162	1.8	162	81	2	369	25	18	15	41	1.89
104894026--104894285	54	4.8	53	73	8	152	27	19	13	39	1.89
104894026--104894286	108	2.4	108	76	6	242	27	19	13	39	1.90
104894226--104894338	54	2.1	53	81	1	127	27	22	12	38	1.90
104894724--104894989	108	2.5	108	77	7	272	28	22	12	36	1.90
104894587--104894977	54	7.2	54	74	8	215	29	21	13	36	1.91
104894724--104894989	54	4.9	54	77	9	240	28	22	12	36	1.90
104894659--104895009	54	6.5	54	75	9	232	28	21	13	36	1.91
104895414--104895518	54	1.9	54	82	0	129	31	22	11	34	1.90
104894749--104896372	510	3.2	506	81	3	1740	32	17	16	33	1.93
104895823--104895956	54	2.5	54	79	4	128	27	19	13	39	1.89
104895852--104895976	54	2.3	55	82	6	148	28	16	15	40	1.89
104895987--104896656	348	1.9	346	83	3	862	33	15	19	31	1.93
104898084--104898373	54	5.4	54	80	4	298	26	21	13	38	1.91
104898093--104898390	108	2.8	107	81	4	346	26	20	13	38	1.90
104898705--104899070	54	6.8	54	74	3	225	25	21	15	37	1.92
104897789--104898925	565	2.0	564	79	4	1193	30	18	16	34	1.93
104898773--104899070	162	1.8	162	83	5	397	24	21	14	39	1.91
104898715--104899018	108	2.8	108	77	3	297	25	21	15	37	1.92
104902531--104902610	33	2.4	33	80	12	92	33	15	23	27	1.94
104905186--104905608	54	7.8	54	79	2	375	26	19	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104908354--104908378	10	2.5	10	100	0	50	0	0	8	92	0.40
104911683--104911727	22	2.0	22	91	0	72	48	15	2	33	1.57
104916271--104916314	21	2.0	22	91	4	72	50	15	2	31	1.57
104919749--104919782	12	2.6	14	86	13	54	32	0	0	67	0.91
104919874--104919912	19	2.1	19	90	4	62	61	7	2	28	1.37
104923305--104923335	2	15.0	2	93	6	53	48	3	0	48	1.17
104924600--104924625	10	2.6	10	100	0	52	76	7	0	15	0.99
104925850--104925874	6	4.2	6	100	0	50	16	0	0	84	0.63
104925866--104926121	106	2.4	105	95	2	449	33	3	5	56	1.41
104928511--104928656	40	3.7	40	84	0	175	24	27	21	26	2.00
104928543--104928694	40	3.8	40	84	5	164	23	25	22	28	1.99
104936617--104936762	40	3.7	40	84	0	175	24	27	21	26	2.00
104936649--104936800	40	3.8	40	84	5	164	23	25	22	28	1.99
104943701--104943726	13	2.0	13	100	0	52	69	0	15	15	1.20
104946220--104946822	204	3.0	199	83	5	739	28	18	18	35	1.94
104947072--104947106	18	1.9	18	94	0	61	11	22	5	60	1.52
104953193--104953230	18	2.1	18	85	9	51	52	5	26	15	1.64
104958012--104958040	2	14.5	2	100	0	58	51	0	0	48	1.00
104959283--104959328	23	2.0	22	84	12	58	52	2	0	45	1.13
104960767--104960832	23	2.9	22	93	0	105	37	1	10	50	1.47
104960768--104960832	13	5.5	13	70	20	61	38	1	10	49	1.47
104963745--104964098	47	7.5	47	74	12	248	26	20	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104963745--104964098	94	3.8	93	78	11	332	26	20	30	22	1.98
104963778--104964098	141	2.3	142	78	9	345	26	19	30	22	1.98
104970950--104971012	30	2.1	30	87	0	90	34	12	23	28	1.92
104971351--104971712	47	7.7	46	72	12	249	26	20	30	22	1.98
104971349--104971713	93	3.9	92	77	10	341	26	20	30	22	1.98
104971349--104971713	187	2.0	186	81	9	440	26	20	30	22	1.98
104973881--104973921	21	2.0	21	95	0	73	51	26	9	12	1.70
104976005--104976114	26	4.2	26	89	0	166	34	6	24	34	1.81
104982108--104982213	50	2.1	50	98	0	203	31	18	15	34	1.92
104988475--104988789	47	6.7	47	92	2	488	32	7	30	28	1.86
104992093--104992137	22	2.0	22	91	0	72	13	22	24	40	1.90
104992116--104992157	19	2.2	19	86	0	57	11	30	23	33	1.91
104999479--104999635	66	2.4	66	84	2	208	28	26	24	20	1.99
105004701--105004743	3	14.3	3	90	0	68	39	0	0	60	0.97
105004700--105004743	15	2.9	15	100	0	88	40	0	0	59	0.98
105011316--105011358	13	3.5	13	78	18	56	34	2	16	46	1.60
105011314--105011360	23	2.0	23	95	0	85	36	2	17	44	1.60
105011552--105011584	6	5.3	6	96	3	57	3	51	0	45	1.16
105012265--105012332	28	2.3	29	92	5	111	19	11	1	67	1.29
105012871--105012899	2	14.5	2	100	0	58	51	0	0	48	1.00
105018073--105018107	16	2.2	16	100	0	70	48	20	5	25	1.71
105019041--105019879	418	2.0	417	84	4	1111	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105021502--105021673	93	1.8	93	96	0	317	27	30	22	20	1.98
105021494--105021669	46	3.8	46	81	10	232	28	29	21	20	1.98
105023926--105024014	30	3.0	30	80	8	101	57	15	16	10	1.65
105023926--105024005	15	5.4	15	80	7	92	58	13	17	10	1.62
105023937--105024014	15	5.2	15	78	9	79	56	15	16	11	1.67
105026268--105026356	30	3.0	30	80	8	101	57	15	16	10	1.65
105026268--105026347	15	5.4	15	80	7	92	58	13	17	10	1.62
105026279--105026356	15	5.2	15	78	9	79	56	15	16	11	1.67
105027291--105027462	93	1.8	93	96	0	317	27	29	22	20	1.98
105027283--105027458	46	3.8	46	83	10	241	28	28	22	20	1.98
105032560--105032633	22	3.3	21	73	17	60	22	5	5	66	1.34
105032764--105032825	31	2.0	31	87	9	90	41	6	0	51	1.27
105032990--105033058	31	2.3	31	84	2	86	36	2	4	56	1.34
105033628--105033678	20	2.4	22	81	15	63	27	7	1	62	1.33
105034766--105034825	25	2.4	24	86	13	77	56	0	1	41	1.09
105035433--105035492	11	5.2	11	72	23	52	61	1	1	35	1.16
105041270--105041294	13	1.9	13	100	0	50	44	0	0	56	0.99
105072017--105072065	17	3.0	16	77	13	55	36	0	4	59	1.17
105072056--105072106	18	2.9	17	74	11	50	54	0	1	43	1.11
105072496--105072540	21	2.1	22	91	4	74	37	0	0	62	0.96
105072952--105073004	28	1.9	27	81	11	63	37	3	0	58	1.16
105079532--105079614	42	2.0	42	97	0	157	39	18	4	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105083055--105083102	22	2.2	22	92	0	78	39	18	22	18	1.92
105088713--105088772	6	9.7	6	78	7	66	80	1	0	18	0.80
105088723--105088777	19	2.9	19	78	10	76	81	3	0	14	0.82
105089027--105089117	19	4.9	19	86	8	134	38	8	14	38	1.77
105089035--105089105	35	2.0	36	94	2	126	39	11	12	36	1.79
105089096--105089140	23	2.0	23	86	4	65	37	2	17	42	1.62
105089404--105089437	18	1.9	17	88	5	50	29	0	0	70	0.87
105097611--105097740	40	3.2	40	80	2	154	22	23	29	24	1.99
105101862--105102156	78	3.8	78	87	3	425	33	18	23	24	1.97
105102179--105102370	45	4.3	46	84	7	232	33	14	28	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438