genome.fa.s3.2.7.7.80.10.50.1000.340.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  340  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106353145--106353198	12	4.7	12	79	9	67	38	16	9	35	1.81
106354174--106354225	25	1.9	27	81	14	63	42	13	9	34	1.77
106356687--106356857	6	27.8	6	70	15	91	47	13	18	19	1.81
106356710--106356787	37	2.1	37	92	0	129	51	12	15	20	1.76
106356713--106356861	62	2.4	62	83	0	190	46	13	19	20	1.83
106356775--106356856	37	2.2	37	80	0	92	45	15	19	19	1.86
106356812--106356863	25	2.1	25	88	0	77	46	17	19	17	1.85
106356708--106356857	31	4.6	32	73	14	121	47	13	19	20	1.82
106356818--106356879	25	2.5	25	83	0	79	48	11	17	22	1.79
106357405--106357796	54	7.5	54	77	9	389	24	19	19	36	1.95
106357403--106357797	81	5.0	81	85	7	519	24	19	19	36	1.94
106357404--106357516	27	4.2	27	80	4	138	26	21	18	33	1.96
106357472--106357559	44	2.0	44	90	0	140	23	14	25	36	1.93
106357433--106357796	107	3.5	101	87	4	376	24	19	19	37	1.94
106357516--106357796	27	10.4	27	88	0	366	23	18	19	37	1.94
106357853--106357918	27	2.4	27	92	0	114	34	10	16	37	1.83
106357853--106357940	27	3.3	27	83	3	106	31	10	19	38	1.85
106364505--106364565	30	2.0	30	83	0	77	31	22	8	37	1.84
106372324--106372722	27	14.7	27	83	4	437	28	23	7	40	1.81
106372338--106372722	135	2.8	135	92	1	610	28	23	7	41	1.81
106372626--106372735	55	2.0	55	83	1	141	31	20	7	40	1.79
106373430--106373471	14	3.1	14	83	12	52	40	14	26	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106374047--106374117	20	3.5	20	90	0	106	33	11	22	32	1.90
106374162--106374328	24	7.0	24	89	4	232	28	22	20	27	1.99
106374162--106374328	47	3.5	47	86	6	230	28	22	20	27	1.99
106374162--106374328	71	2.3	71	91	3	264	28	22	20	27	1.99
106384874--106385167	123	2.4	123	94	1	509	29	11	25	32	1.91
106385146--106385353	40	5.2	40	83	2	211	25	23	25	25	2.00
106385147--106385353	80	2.6	80	82	6	240	25	23	26	25	2.00
106393008--106393042	18	1.9	18	88	0	52	40	0	25	34	1.56
106393185--106393289	39	2.7	39	82	7	131	28	22	23	24	1.99
106393227--106393373	39	3.8	38	80	12	149	25	25	25	23	2.00
106396101--106396204	38	2.7	39	86	5	131	26	25	27	20	1.99
106396058--106396243	40	4.8	38	73	12	137	27	23	26	22	1.99
106396102--106396283	80	2.3	79	78	6	181	23	24	29	22	1.99
106403876--106404059	40	4.6	40	78	4	147	22	24	29	23	1.99
106406173--106406226	27	2.0	27	100	0	108	51	11	25	11	1.70
106409802--106409859	30	1.9	30	86	6	82	25	27	8	37	1.85
106411148--106411243	26	3.7	26	81	2	113	36	19	16	27	1.93
106412272--106412327	28	2.0	28	92	0	94	41	14	17	26	1.88
106414310--106414379	5	14.4	5	80	10	65	78	5	0	15	0.93
106414310--106414380	20	3.7	19	81	10	83	77	5	0	16	0.95
106422753--106422925	89	1.9	89	98	0	337	35	17	16	29	1.93
106425571--106425818	42	5.9	42	76	13	249	31	25	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106425573--106425818	85	2.9	84	86	7	322	31	24	15	28	1.95
106425742--106425949	48	4.5	48	80	3	158	27	23	19	29	1.98
106425832--106425960	48	2.7	48	85	0	168	25	23	21	29	1.99
106431775--106432010	85	2.8	84	77	9	246	31	24	13	30	1.94
106431775--106432009	42	5.5	42	71	9	129	31	24	13	30	1.94
106433486--106433655	48	3.6	46	80	6	180	28	19	27	24	1.98
106434505--106434544	21	2.0	20	85	14	55	15	40	25	20	1.90
106436798--106436882	41	2.1	41	97	0	161	36	10	24	28	1.89
106437206--106437349	40	3.6	40	87	0	198	23	26	24	25	2.00
106441995--106442037	3	14.3	3	100	0	86	32	0	0	67	0.91
106445849--106445897	17	2.9	16	81	6	53	18	4	6	71	1.23
106456140--106456254	27	4.3	26	83	5	131	36	21	23	18	1.95
106456140--106456254	54	2.1	54	85	6	153	36	21	23	18	1.95
106457864--106457948	26	3.3	26	95	3	145	37	24	3	34	1.73
106461630--106461713	27	3.1	27	81	1	89	38	20	22	19	1.94
106463888--106464071	40	4.6	40	82	4	174	28	22	26	23	1.99
106465240--106465280	21	2.0	21	100	0	82	58	14	4	21	1.55
106475541--106475704	71	2.3	71	100	0	328	18	28	17	35	1.94
106475541--106475738	71	2.8	70	91	3	258	20	28	17	33	1.95
106479484--106479768	135	2.1	137	94	1	502	31	25	18	24	1.97
106480016--106480068	26	2.0	27	85	7	74	24	15	22	37	1.92
106481548--106481706	26	6.2	25	92	5	248	35	23	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106481548--106481706	50	3.1	51	92	2	266	35	23	5	34	1.79
106485447--106485731	135	2.1	137	96	1	520	31	25	18	24	1.97
106485979--106486031	26	2.0	27	85	7	74	24	15	22	37	1.92
106487513--106487674	26	6.2	26	96	0	270	36	23	5	34	1.78
106489870--106490067	47	4.0	50	92	5	341	32	8	27	31	1.86
106489870--106490060	96	2.0	98	96	2	359	32	8	28	30	1.87
106490052--106490203	48	3.2	48	85	0	223	35	7	26	30	1.84
106489921--106490204	96	2.9	97	79	10	248	33	8	27	30	1.86
106490243--106490370	37	3.4	37	95	1	220	23	18	32	25	1.97
106495634--106495693	30	2.0	30	86	0	84	30	25	6	38	1.81
106499687--106499722	18	1.9	19	88	5	56	63	0	25	11	1.27
106500187--106500318	29	4.5	29	93	1	210	40	14	22	22	1.90
106500187--106500318	59	2.3	58	92	4	212	40	14	22	22	1.90
106503879--106503986	26	4.2	26	91	0	180	32	6	24	37	1.81
106510153--106510267	28	4.0	29	80	11	101	32	22	19	26	1.97
106510171--106510347	28	6.2	28	78	2	167	35	20	16	27	1.95
106514552--106514729	88	2.0	88	95	0	320	25	15	21	37	1.93
106515995--106516058	22	2.9	22	76	0	83	31	17	25	26	1.97
106518221--106518478	127	2.0	127	99	0	507	38	14	13	33	1.85
106521144--106521213	23	2.9	23	69	26	56	38	1	4	55	1.28
106521316--106521350	12	3.0	11	91	8	52	77	0	22	0	0.78
106521718--106521750	16	2.0	17	88	5	50	42	0	21	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106522159--106522198	13	2.9	14	85	7	55	62	0	10	27	1.27
106522535--106522626	44	2.1	44	85	0	121	21	20	23	33	1.97
106523000--106523030	12	2.5	12	94	5	53	48	0	16	35	1.46
106528979--106529297	90	3.5	90	81	2	304	29	23	14	32	1.94
106531000--106531025	10	2.6	10	100	0	52	53	11	0	34	1.37
106532783--106532818	16	2.2	17	90	5	56	44	33	2	19	1.65
106532797--106532841	23	2.0	23	87	12	67	46	35	0	17	1.49
106533778--106533824	21	2.3	21	92	3	78	38	8	10	42	1.70
106534099--106534176	40	2.0	39	82	7	95	38	5	5	51	1.46
106535279--106535313	18	2.0	18	88	5	54	40	2	2	54	1.30
106535279--106535317	18	2.2	18	86	9	53	38	2	2	56	1.27
106543664--106543758	45	2.2	45	84	3	122	26	15	20	37	1.92
106547576--106547604	12	2.5	12	94	5	51	37	0	10	51	1.36
106547678--106547710	15	2.2	15	94	0	57	39	9	15	36	1.79
106548099--106548165	34	2.0	34	96	0	125	59	5	19	14	1.56
106560542--106560600	32	1.9	32	86	6	86	69	8	6	15	1.34
106561190--106561219	15	2.0	15	93	0	51	56	6	3	33	1.42
106564808--106564925	41	3.1	41	60	28	98	32	17	28	21	1.96
106564776--106564939	71	2.3	71	100	0	328	35	17	28	18	1.94
106572363--106572480	41	3.1	41	60	28	98	32	17	28	21	1.96
106572331--106572494	71	2.3	71	100	0	328	35	17	28	18	1.94
106578244--106578331	40	2.2	39	87	4	122	34	30	17	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106578321--106578378	30	1.9	30	100	0	116	32	27	22	17	1.96
106578351--106578478	39	3.3	39	94	0	229	32	29	19	18	1.96
106578551--106578632	28	2.9	28	85	0	101	29	23	10	36	1.89
106584729--106584814	40	2.2	38	91	4	136	32	31	20	15	1.94
106584801--106584857	30	1.9	29	96	3	105	33	26	22	17	1.96
106584830--106584957	39	3.3	39	89	4	204	32	27	19	20	1.97
106585030--106585096	28	2.4	28	82	2	80	29	23	7	38	1.82
106587023--106587276	40	6.5	40	88	7	337	23	22	27	26	1.99
106587023--106587276	77	3.3	79	84	9	326	23	22	27	26	1.99
106595069--106595310	40	6.1	40	91	4	343	23	22	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438