Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  418  of  438  ( 52554 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129620671--129620700
15
2.0
15
93
0
51
43
3
13
40
1.60
129622334--129622395
31
2.0
30
84
12
81
30
12
6
50
1.66
129623601--129623689
30
3.0
30
80
9
101
39
2
17
40
1.63
129624074--129624124
24
2.3
23
83
10
61
54
0
1
43
1.11
129633723--129633879
25
6.2
26
94
4
261
36
22
5
34
1.78
129639602--129639737
26
5.2
26
98
0
245
36
25
5
32
1.80
129645397--129645532
26
5.2
26
90
0
218
36
24
5
33
1.80
129648985--129649141
35
4.5
35
86
0
197
17
14
32
35
1.91
129658523--129658648
18
6.8
17
70
20
65
40
1
2
55
1.22
129658480--129658650
77
2.2
78
89
4
258
42
1
2
53
1.26
129658539--129658650
9
12.8
9
74
17
67
42
0
1
54
1.17
129658523--129658650
17
6.9
17
70
16
67
41
1
2
54
1.22
129659452--129659509
15
3.9
14
77
20
55
58
0
0
41
0.98
129659406--129659481
38
2.0
38
82
10
93
47
0
3
48
1.20
129663304--129663343
20
2.1
20
86
9
57
2
15
0
82
0.77
129664769--129664878
54
2.1
54
98
1
213
45
22
10
20
1.82
129665896--129665948
26
2.0
27
85
7
74
24
15
22
37
1.92
129667443--129667553
26
4.3
26
93
4
197
35
23
7
34
1.82
129681855--129681896
21
2.0
22
85
4
59
50
2
42
4
1.36
129683476--129683513
20
1.9
20
100
0
76
47
7
10
34
1.67
129685946--129686001
26
2.1
28
83
6
71
41
5
3
50
1.43
129686640--129686819
88
2.0
89
91
4
292
32
23
10
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129691274--129691311
19
2.0
19
94
0
67
21
18
15
44
1.86
129695605--129695639
4
8.8
4
100
0
70
25
0
22
51
1.48
129696984--129697028
23
2.0
21
83
8
54
28
2
17
51
1.58
129699120--129699216
33
2.9
33
92
0
158
18
10
40
30
1.84
129704876--129704911
18
2.1
18
89
5
56
66
0
0
33
0.92
129705177--129705251
19
3.9
19
85
5
98
36
17
12
34
1.87
129705369--129705408
21
2.0
20
85
5
53
10
5
12
72
1.26
129705601--129705800
45
4.5
45
84
3
251
26
29
12
32
1.93
129705601--129705784
89
2.1
90
86
3
255
27
29
11
30
1.92
129705814--129706107
78
3.8
78
90
2
457
24
23
19
31
1.98
129715907--129715949
21
2.0
21
100
0
86
51
4
9
34
1.55
129715976--129716044
21
3.4
20
69
15
61
36
1
8
53
1.41
129716031--129716061
15
2.1
14
94
5
53
35
3
6
54
1.42
129724354--129724386
17
1.9
17
88
11
50
69
0
0
30
0.88
129724354--129724387
18
1.9
17
88
5
50
70
0
0
29
0.87
129724679--129724724
18
2.5
19
92
3
76
34
15
13
36
1.86
129726518--129726571
26
2.1
26
96
0
99
27
24
11
37
1.89
129728553--129728605
13
4.1
13
83
9
72
33
7
22
35
1.83
129729988--129730021
18
1.9
18
88
5
52
38
2
2
55
1.30
129730192--129730251
31
2.0
29
83
6
75
40
10
8
41
1.69
129730355--129730423
29
2.4
28
92
2
102
56
1
1
40
1.17
129730316--129730412
29
3.7
25
72
18
72
50
1
3
45
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129731099--129731357
108
2.4
107
82
6
362
39
4
10
45
1.58
129731660--129731725
33
2.0
33
96
0
123
15
19
36
28
1.92
129732041--129732065
3
8.3
3
100
0
50
32
0
0
68
0.90
129736508--129736544
2
19.0
2
94
5
67
51
0
0
48
1.00
129736673--129736715
20
2.2
20
80
19
56
58
0
2
39
1.11
129737212--129737252
20
2.0
20
85
0
55
46
7
2
43
1.44
129739398--129739674
125
2.2
125
93
1
486
24
29
20
25
1.99
129740408--129740604
105
1.9
101
81
8
236
27
21
15
35
1.94
129742957--129742993
19
1.9
19
88
0
56
40
18
10
29
1.85
129753769--129753824
28
2.0
28
86
10
78
50
0
3
46
1.19
129754278--129754320
2
22.0
2
95
4
79
48
0
0
51
1.00
129758191--129758234
21
2.1
21
84
16
56
72
2
6
18
1.17
129761676--129761758
42
2.0
42
85
0
112
18
19
16
45
1.85
129761697--129761759
21
3.0
22
71
13
60
15
20
17
46
1.85
129761698--129761779
42
2.0
42
85
4
112
15
21
17
45
1.85
129763408--129763505
48
2.0
48
94
3
171
45
21
6
26
1.75
129774367--129774579
48
4.7
45
84
11
237
31
26
14
27
1.95
129774367--129774577
42
4.7
43
79
16
216
31
27
13
27
1.94
129774437--129774694
48
5.3
47
79
11
261
32
26
13
26
1.94
129774587--129774694
53
2.0
53
89
3
164
30
26
14
27
1.95
129777702--129777747
23
2.0
23
100
0
92
43
17
0
39
1.49
129778613--129778671
17
3.5
17
71
0
55
35
27
11
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129778823--129778966
17
8.5
17
80
0
135
47
21
7
22
1.76
129778817--129779002
34
5.5
34
81
2
185
45
21
8
24
1.78
129778816--129779002
68
2.7
67
80
4
207
45
21
8
24
1.79
129778823--129779004
51
3.6
51
78
5
188
46
20
7
24
1.77
129778840--129779004
17
9.7
18
79
7
125
46
20
8
25
1.78
129790089--129790154
31
2.2
29
84
10
80
42
4
1
51
1.31
129793554--129793591
16
2.2
18
86
13
53
44
7
0
47
1.32
129801652--129801752
16
6.0
16
72
18
71
56
0
1
40
1.17
129803805--129803845
19
2.1
20
90
4
66
46
21
0
31
1.52
129811285--129811321
3
12.3
3
100
0
74
64
0
0
35
0.94
129814093--129814154
31
2.0
31
96
0
115
22
8
35
33
1.84
129814380--129814444
31
2.1
31
97
0
121
24
9
33
32
1.87
129813937--129814512
290
2.0
290
97
0
1089
35
10
23
30
1.88
129819794--129819861
28
2.4
28
85
2
82
2
4
19
73
1.13
129823252--129823294
19
2.3
19
84
11
54
39
0
0
60
0.97
129823252--129823299
13
3.8
13
76
20
57
39
0
0
60
0.97
129827903--129827982
40
2.0
42
82
5
101
17
45
23
13
1.84
129832923--129832959
16
2.3
16
85
0
56
56
8
0
35
1.29
129838088--129838113
2
13.0
2
100
0
52
50
0
50
0
1.00
129839752--129839789
15
2.4
16
86
4
51
42
18
2
36
1.64
129842765--129842818
27
2.0
27
92
0
90
33
18
14
33
1.92
129843410--129843443
16
2.1
16
88
0
50
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129843417--129843443
8
3.4
8
100
0
54
29
0
0
70
0.88
129847645--129847669
12
2.1
12
100
0
50
56
8
16
20
1.65
129847957--129847990
16
2.1
16
88
0
50
41
20
14
23
1.89
129848522--129848578
21
2.7
21
80
0
69
15
8
19
56
1.65
129848577--129848625
20
2.5
20
86
0
62
22
6
12
59
1.55
129849913--129849949
19
1.9
19
94
0
65
24
37
18
18
1.94
129857743--129857856
46
2.5
46
95
0
201
34
13
22
29
1.92
129857745--129857915
46
3.8
45
85
3
164
34
13
22
29
1.92
129866832--129867051
46
4.6
48
76
14
165
31
18
27
22
1.97
129875446--129875492
19
2.5
18
80
13
51
53
6
2
38
1.39
129880909--129880953
10
4.4
10
81
13
56
62
6
0
31
1.21
129880920--129880979
19
3.1
19
73
2
57
61
5
0
33
1.17
129884673--129884709
11
3.2
12
85
11
51
32
5
5
56
1.45
129885850--129885891
16
2.6
16
96
0
75
7
54
19
19
1.66
129887833--129887866
12
2.9
12
86
4
52
32
0
0
67
0.91
129887867--129887907
18
2.3
19
80
16
52
65
9
0
24
1.22
129888234--129888739
54
9.4
54
76
3
295
29
18
12
39
1.88
129888228--129888711
162
3.0
161
79
4
456
28
18
13
39
1.88
129888230--129888701
108
4.4
106
75
7
369
29
18
12
40
1.87
129891384--129891429
10
4.6
10
78
10
58
65
2
10
21
1.35
129892010--129892059
23
2.2
23
85
0
64
32
12
10
46
1.74
129892571--129892641
32
2.2
32
89
0
106
42
8
15
33
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129893087--129893114
5
5.6
5
100
0
56
17
0
0
82
0.68
129893106--129893161
28
2.0
28
100
0
112
25
14
14
46
1.82
129898054--129898091
16
2.4
16
86
8
51
55
21
5
18
1.62
129902901--129902936
2
17.5
2
94
5
63
47
0
2
50
1.15
129905215--129905292
22
3.6
22
74
8
61
17
7
11
62
1.51
129906394--129906440
24
2.0
24
87
8
69
17
4
8
70
1.29
129906581--129906629
25
1.9
26
88
12
75
63
0
8
28
1.23
129906572--129906655
9
9.3
9
70
21
52
63
1
4
30
1.23
129906955--129907018
19
3.5
18
75
12
60
32
4
1
60
1.26
129906960--129907010
27
1.9
27
92
4
86
33
3
1
60
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438