genome.fa.s3.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  137  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40778598--40778693	48	2.0	48	97	0	183	26	14	17	41	1.88
40782301--40782465	42	3.9	42	84	3	188	27	23	16	32	1.96
40790784--40790923	46	3.0	46	96	0	253	35	7	27	30	1.84
40790782--40790949	46	3.6	48	86	6	227	34	7	27	30	1.85
40790923--40791033	47	2.4	47	89	0	168	36	9	27	27	1.87
40793564--40793827	40	6.6	40	95	0	438	25	21	28	25	1.99
40794487--40794626	40	3.5	40	76	8	124	26	24	25	23	2.00
40797292--40797431	46	3.0	46	96	0	253	35	7	27	30	1.84
40797290--40797457	46	3.6	48	86	6	227	34	7	27	30	1.85
40797431--40797541	47	2.4	47	89	0	168	36	9	27	27	1.87
40799935--40800116	46	4.0	46	97	0	337	34	7	27	31	1.84
40800120--40800230	47	2.4	47	89	0	168	36	9	27	27	1.87
40804585--40804817	50	4.7	50	84	3	281	39	18	11	31	1.86
40804585--40804844	100	2.6	99	85	2	324	39	18	11	31	1.85
40804583--40804843	50	5.2	50	82	3	274	39	18	11	31	1.85
40813408--40813659	68	3.8	64	77	12	212	28	15	30	25	1.96
40813477--40813659	64	2.8	64	79	7	174	29	16	30	23	1.96
40820174--40820433	50	5.2	50	84	3	299	38	19	11	30	1.87
40824417--40824555	60	2.3	59	80	8	147	25	27	20	26	1.99
40824548--40824586	20	2.0	20	85	10	53	28	25	17	28	1.98
40824844--40824886	2	21.5	2	100	0	86	51	0	0	48	1.00
40828076--40828119	22	2.0	22	100	0	88	31	9	22	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40831026--40831101	39	1.9	39	97	0	143	38	10	10	40	1.74
40839197--40839231	18	1.9	18	100	0	70	40	14	11	34	1.82
40842298--40842385	43	2.0	43	97	0	167	22	23	12	40	1.88
40851949--40852005	9	5.9	9	73	15	51	35	8	21	35	1.84
40851947--40852017	20	3.5	20	94	0	124	35	11	21	32	1.89
40851958--40852012	11	5.4	11	70	16	55	36	12	20	30	1.90
40852064--40852230	23	7.1	23	92	2	262	28	20	20	29	1.98
40852063--40852252	24	8.0	23	89	4	256	28	21	21	28	1.98
40852062--40852230	47	3.6	47	90	3	268	28	21	20	28	1.98
40857341--40857523	78	2.3	81	85	9	252	24	21	27	26	2.00
40857340--40857523	40	4.7	40	87	6	252	24	21	27	26	1.99
40865433--40865617	40	4.7	40	87	4	218	25	21	26	26	1.99
40865485--40865650	80	2.1	79	83	7	203	27	20	25	25	1.99
40868887--40869027	40	3.5	40	85	6	169	29	26	19	24	1.98
40870755--40870830	40	1.9	40	86	5	109	31	23	17	27	1.97
40882603--40882662	28	2.2	27	88	8	86	35	21	25	18	1.96
40885363--40885426	33	1.9	33	87	6	94	35	26	20	17	1.94
40893429--40893453	13	1.9	13	100	0	50	28	32	24	16	1.96
40905043--40905075	8	4.0	8	96	4	57	12	0	0	87	0.53
40907027--40907081	23	2.5	22	82	14	60	67	10	0	21	1.21
40907442--40907493	26	2.0	26	96	0	95	28	11	21	38	1.88
40907600--40907642	23	1.9	23	90	4	70	25	0	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40910530--40910601	35	2.1	35	94	0	126	50	2	0	47	1.15
40913451--40913667	40	5.5	40	87	4	280	23	23	27	25	2.00
40921568--40921731	40	4.1	40	88	4	233	21	22	29	26	1.99
40929398--40929573	46	3.8	46	76	11	180	22	19	27	30	1.98
40929395--40929566	93	1.8	93	88	2	265	22	20	27	29	1.98
40934907--40935082	46	3.8	46	78	11	189	21	19	28	30	1.98
40934904--40935075	93	1.8	93	90	2	274	21	20	29	29	1.98
40936747--40936828	34	2.4	34	84	8	105	41	13	10	34	1.79
40940733--40940765	14	2.3	15	89	5	50	30	0	0	69	0.88
40941771--40941823	26	2.0	26	88	0	79	24	7	5	62	1.44
40953171--40953339	93	1.8	91	92	2	284	21	20	28	28	1.98
40953175--40953344	46	3.7	46	77	14	190	22	20	28	28	1.99
40962755--40962923	27	6.3	26	86	2	176	42	19	7	31	1.78
40962772--40962950	27	6.7	27	88	1	245	41	20	7	30	1.79
40962772--40963004	81	2.9	81	82	5	233	40	21	8	30	1.82
40962934--40963008	27	2.8	27	87	4	107	38	24	10	26	1.88
40963000--40963399	27	14.8	27	86	1	514	28	23	8	39	1.83
40964640--40964687	25	1.9	25	86	0	69	33	25	16	25	1.96
40964731--40964789	20	3.0	20	92	0	100	35	11	20	32	1.89
40964840--40964916	24	3.2	24	92	0	127	29	20	22	27	1.98
40965127--40965221	31	3.1	31	96	0	172	38	15	21	24	1.92
40966341--40966385	23	2.0	23	100	0	90	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40989357--40989399	21	2.0	21	100	0	86	55	13	9	20	1.66
40990657--40990736	42	1.9	42	92	5	135	32	23	11	32	1.90
40998182--40998336	42	3.7	42	84	3	186	28	25	15	30	1.96
40999776--40999820	20	2.2	20	88	0	63	35	13	2	48	1.54
41005811--41005940	40	3.2	40	81	2	163	23	23	28	24	2.00
41013429--41013558	40	3.2	40	81	2	163	23	23	28	24	2.00
41016819--41016927	37	2.9	37	90	0	173	26	31	19	22	1.98
41017068--41017476	48	8.5	48	95	1	674	30	28	6	34	1.82
41017418--41017541	65	1.9	65	96	0	230	31	25	6	37	1.81
41017319--41017616	161	1.9	161	97	0	560	31	27	6	34	1.82
41017367--41017589	113	2.0	113	97	0	419	31	26	6	35	1.81
41017461--41017610	48	3.1	47	78	16	157	31	27	6	34	1.83
41022330--41022374	20	2.2	20	92	0	72	35	11	2	51	1.50
41036045--41036075	7	4.3	7	92	8	53	70	0	0	29	0.87
41036045--41036075	15	2.1	14	94	5	53	70	0	0	29	0.87
41036456--41036485	14	2.1	14	93	0	51	13	0	36	50	1.42
41036679--41037267	125	4.7	124	89	2	874	36	17	16	29	1.92
41038063--41038154	42	2.2	42	90	0	139	34	22	14	28	1.93
41038303--41038444	26	5.6	26	90	1	209	27	22	22	27	1.99
41038303--41038444	52	2.8	52	92	3	236	27	22	22	27	1.99
41039245--41039328	27	3.1	27	86	3	116	22	26	21	29	1.99
41039245--41039345	27	3.7	27	80	10	100	23	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41039480--41039793	54	5.8	52	80	7	306	28	7	21	42	1.81
41039480--41039793	81	3.9	81	91	1	452	28	7	21	42	1.81
41039367--41039807	27	16.3	27	74	7	241	29	9	21	40	1.84
41039785--41039915	27	4.9	27	85	0	172	40	8	22	29	1.83
41039758--41039915	54	2.9	54	82	0	181	38	8	22	31	1.83
41039795--41039940	54	2.7	54	83	0	148	38	8	22	30	1.85
41046819--41046922	29	3.6	29	78	1	111	26	17	30	25	1.97
41049471--41049505	16	2.2	16	100	0	70	28	5	20	45	1.73
41052148--41052226	7	11.1	7	69	2	50	24	1	35	39	1.63
41052368--41052421	14	3.9	14	80	0	63	24	0	29	46	1.53
41052452--41052480	14	2.0	15	93	6	51	20	0	37	41	1.53
41052457--41052570	7	16.1	7	71	12	72	17	0	41	41	1.49
41053328--41053380	16	3.5	15	78	16	56	47	3	1	47	1.31
41053353--41053406	16	3.8	16	70	27	57	38	9	3	48	1.53
41059761--41059946	40	4.7	40	88	5	236	25	26	22	25	2.00
41075099--41075128	2	15.0	2	100	0	60	50	0	0	50	1.00
41075594--41075667	29	2.6	29	89	4	105	25	16	32	25	1.96
41083594--41083764	93	1.8	93	93	2	299	28	29	21	20	1.98
41083586--41083766	46	3.9	46	79	12	219	28	29	20	20	1.98
41085620--41085652	17	1.9	17	93	0	57	21	21	15	42	1.89
41088240--41088264	12	2.1	12	100	0	50	36	0	16	48	1.46
41090236--41090279	22	2.0	22	86	4	61	22	0	13	63	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41090562--41090657	32	3.0	32	96	0	174	31	10	20	37	1.87
41093907--41094110	40	5.1	40	81	3	214	26	23	25	24	2.00
41093907--41094061	79	2.0	80	85	3	215	27	21	27	23	1.99
41101905--41102111	40	5.2	39	81	5	209	26	23	26	24	2.00
41101909--41102115	80	2.6	79	80	3	236	26	23	26	24	2.00
41109896--41110086	39	4.9	39	80	5	190	25	23	27	24	2.00
41109900--41110102	78	2.6	79	79	5	225	25	22	27	25	2.00
41117919--41118069	40	3.8	40	85	3	196	27	21	27	23	1.99
41117923--41118130	80	2.6	80	80	2	222	25	22	26	25	2.00
41121425--41121599	46	3.8	46	73	14	171	31	30	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438