genome.fa.s3.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  138  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41124468--41124694	40	5.7	40	94	3	397	24	27	22	24	2.00
41129288--41129422	40	3.4	40	87	2	191	24	26	21	27	1.99
41134645--41134719	29	2.6	29	100	0	150	32	17	28	22	1.96
41138770--41138865	50	1.9	50	95	0	174	26	4	21	47	1.68
41139475--41139544	21	3.5	21	71	15	76	52	14	10	22	1.71
41139477--41139553	38	2.0	38	97	0	145	50	15	11	22	1.76
41147223--41147435	105	2.0	105	95	0	381	39	22	15	22	1.91
41151028--41151068	15	2.7	15	96	0	73	31	26	4	36	1.78
41164386--41164500	57	2.0	57	98	0	221	42	9	8	39	1.68
41164710--41164754	22	2.0	22	91	0	72	33	2	15	48	1.57
41169289--41169333	22	2.0	22	91	0	72	33	2	15	48	1.57
41174681--41174779	33	3.0	33	92	0	162	28	42	10	19	1.83
41180725--41180814	46	2.0	46	93	0	153	23	5	11	60	1.52
41182170--41182259	46	2.0	46	95	0	162	24	3	10	62	1.42
41192824--41192890	31	2.2	31	86	10	93	25	20	8	44	1.80
41201136--41201206	18	3.8	19	72	23	71	76	1	22	0	0.87
41202355--41202384	16	1.9	15	93	6	51	36	0	6	56	1.26
41220600--41220863	46	5.7	46	73	12	193	24	27	20	28	1.99
41220596--41220860	93	2.9	92	81	8	306	24	27	19	28	1.99
41221193--41221250	30	1.9	30	92	0	98	27	25	13	32	1.94
41223442--41223528	37	2.3	37	96	2	156	26	32	19	21	1.97
41223597--41223752	49	3.2	49	95	0	276	30	29	8	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41226867--41226915	24	2.1	23	96	3	89	12	18	20	48	1.79
41226992--41227085	27	3.5	27	85	0	107	28	25	23	22	1.99
41228206--41228267	24	2.7	24	82	5	65	51	9	8	30	1.63
41232414--41232564	42	3.6	42	83	1	185	32	14	23	29	1.94
41236910--41237077	40	4.2	40	82	1	185	24	26	22	26	2.00
41242063--41242186	46	2.7	48	82	12	152	30	18	29	21	1.97
41242151--41242281	49	2.7	49	84	1	174	29	19	26	25	1.98
41242253--41242306	28	1.9	28	96	0	99	24	14	31	29	1.95
41246599--41246767	40	4.2	40	80	4	173	23	26	21	28	1.99
41254630--41254798	40	4.2	40	80	4	173	23	26	21	28	1.99
41259528--41259764	79	3.0	79	93	4	383	23	23	27	26	2.00
41259528--41259764	40	6.0	40	93	4	378	23	23	27	26	2.00
41265595--41265777	39	4.6	39	87	0	240	24	22	30	22	1.99
41270667--41270882	40	5.4	40	91	3	332	23	23	27	25	2.00
41270667--41270882	79	2.7	80	91	4	332	23	23	27	25	2.00
41270667--41270882	119	1.8	119	88	6	330	23	23	27	25	2.00
41272367--41272396	15	1.9	16	93	6	53	36	0	23	40	1.55
41277962--41278085	59	2.1	58	83	4	151	43	0	4	51	1.26
41278183--41278275	46	2.1	45	86	11	129	37	25	4	32	1.76
41278257--41278308	16	3.3	15	76	10	50	32	28	1	36	1.69
41280907--41281267	46	7.7	47	75	12	307	27	19	29	22	1.98
41280901--41281217	142	2.3	138	82	7	381	27	19	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41298738--41298790	25	2.1	25	100	0	106	49	18	3	28	1.65
41306464--41306550	24	3.6	24	96	0	165	21	17	25	35	1.95
41306464--41306572	48	2.3	48	91	3	175	24	17	23	33	1.96
41306464--41306572	24	4.5	24	90	2	157	24	17	23	33	1.96
41314337--41314423	24	3.6	24	96	0	165	21	17	25	35	1.95
41314337--41314445	48	2.3	48	91	3	175	24	17	23	33	1.96
41314337--41314445	24	4.5	24	90	2	157	24	17	23	33	1.96
41315991--41316022	15	2.1	15	94	0	55	15	6	9	68	1.36
41318214--41318372	43	3.7	43	74	10	155	31	24	18	25	1.97
41323793--41323959	40	4.2	40	82	2	185	25	27	21	25	1.99
41323793--41323959	80	2.1	79	83	7	205	25	27	21	25	1.99
41324782--41324827	17	2.5	19	74	22	53	34	23	17	23	1.96
41331795--41331961	40	4.2	40	82	2	185	25	27	21	25	1.99
41331795--41331961	80	2.1	79	83	7	205	25	27	21	25	1.99
41332782--41332827	17	2.5	19	74	22	53	34	23	17	23	1.96
41340932--41340998	27	2.5	27	83	9	82	28	16	23	31	1.96
41340932--41341023	27	3.4	27	80	10	80	28	15	25	31	1.95
41343759--41343814	27	2.1	27	86	0	76	21	37	16	25	1.93
41343977--41344107	55	2.4	53	79	7	138	46	17	11	24	1.81
41344124--41344299	59	3.1	56	75	15	155	50	18	12	18	1.78
41344021--41344261	54	4.4	54	72	12	175	50	16	11	21	1.77
41344025--41344299	113	2.4	112	80	8	270	49	17	12	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41352549--41352583	8	4.5	8	89	3	54	42	20	25	11	1.85
41353066--41353122	9	5.9	9	73	15	51	35	8	21	35	1.84
41353064--41353134	20	3.5	20	94	0	124	35	11	21	32	1.89
41353075--41353129	11	5.4	11	70	16	55	36	12	20	30	1.90
41353181--41353323	23	6.1	23	92	3	241	27	20	20	30	1.98
41353179--41353344	47	3.5	47	90	4	246	27	21	21	28	1.99
41353181--41353323	70	2.0	70	95	0	259	27	20	20	30	1.98
41360479--41360535	9	5.9	9	73	15	51	35	8	21	35	1.84
41360477--41360547	20	3.5	20	94	0	124	35	11	21	32	1.89
41360488--41360542	11	5.4	11	70	16	55	36	12	20	30	1.90
41360594--41360760	23	7.1	23	95	2	280	28	22	20	28	1.99
41360593--41360782	24	8.0	23	91	4	274	28	22	21	27	1.99
41360592--41360760	47	3.6	47	92	3	286	28	22	20	28	1.99
41362816--41362917	29	3.5	29	90	0	150	27	15	33	23	1.95
41370837--41370938	29	3.5	29	90	0	150	27	15	33	23	1.95
41377849--41377888	21	2.0	21	90	5	64	20	22	42	15	1.88
41381306--41381361	27	2.1	27	96	0	103	30	32	14	23	1.94
41382333--41382358	10	2.6	10	100	0	52	38	0	19	42	1.51
41385480--41385508	2	15.0	2	92	7	51	48	0	0	51	1.00
41387639--41387665	12	2.2	12	100	0	54	0	7	0	92	0.38
41395055--41395196	57	2.5	56	77	10	146	33	22	16	28	1.95
41400080--41400139	28	2.2	26	80	11	75	26	25	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41400094--41400156	28	2.2	28	94	0	108	28	26	11	33	1.91
41400314--41400377	32	2.0	32	96	3	121	28	10	31	29	1.91
41416100--41416162	24	2.6	24	100	0	126	34	26	17	20	1.95
41423812--41424089	146	1.9	146	82	7	356	24	30	17	26	1.97
41424083--41424177	48	2.0	48	93	0	163	25	29	18	26	1.98
41423810--41424227	47	8.8	47	77	9	300	24	29	18	27	1.98
41425341--41425369	10	2.7	11	94	5	51	72	0	0	27	0.85
41428725--41428826	28	3.5	29	81	6	109	28	27	14	29	1.95
41436568--41436669	28	3.5	29	81	6	109	28	27	14	29	1.95
41439329--41439505	43	4.1	42	75	9	178	33	25	18	22	1.96
41449393--41449561	39	4.3	40	88	6	215	24	21	28	24	1.99
41449406--41449561	77	2.0	77	86	7	219	25	20	28	25	1.99
41457481--41457587	39	2.7	39	86	2	151	26	20	28	24	1.99
41457487--41457616	40	3.3	40	89	3	183	23	22	29	24	1.99
41457486--41457651	79	2.1	79	78	6	176	24	21	28	26	1.99
41460334--41460400	34	2.0	33	83	16	84	22	22	25	29	1.99
41463288--41463513	40	5.7	40	88	4	289	27	26	20	25	1.99
41465560--41465597	12	3.2	12	88	0	58	21	44	0	34	1.52
41475955--41476090	46	2.9	47	82	3	177	32	26	21	19	1.97
41478334--41478509	46	3.8	46	81	12	225	20	21	28	28	1.98
41478331--41478501	93	1.8	93	96	0	315	21	22	28	28	1.99
41486139--41486227	42	2.1	42	87	0	124	53	15	4	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41486158--41486249	42	2.2	41	82	9	105	57	11	4	26	1.53
41486248--41486291	19	2.4	18	88	7	70	45	11	0	43	1.40
41490619--41490707	42	2.1	42	89	0	133	52	13	5	28	1.62
41490620--41490729	42	2.6	41	81	9	105	53	12	4	29	1.58
41490732--41490771	19	2.2	18	95	4	71	42	15	0	42	1.46
41493911--41493956	23	2.1	23	88	8	69	43	2	4	50	1.34
41495981--41496017	16	2.3	16	90	9	58	35	13	24	27	1.93
41500545--41500624	38	2.1	38	100	0	160	42	12	11	33	1.78
41500743--41500784	14	3.0	14	80	19	52	38	7	16	38	1.76
41500867--41500905	20	2.0	20	94	0	69	48	2	0	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438