genome.fa.s3.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  159  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48403682--48403740	29	2.0	31	80	12	70	37	1	20	40	1.63
48408174--48408211	15	2.5	15	95	4	67	10	2	0	86	0.66
48408175--48408210	7	4.9	7	87	12	54	11	2	0	86	0.68
48408174--48408211	8	4.9	8	87	6	60	10	2	0	86	0.66
48411737--48411787	25	2.2	24	86	13	79	41	7	0	50	1.31
48417512--48417744	49	4.8	49	94	0	403	30	33	8	27	1.87
48423923--48424004	29	2.8	29	98	0	155	29	14	30	25	1.95
48425996--48426028	16	2.1	16	100	0	66	33	18	24	24	1.97
48431841--48431922	29	2.8	29	98	0	155	29	14	30	25	1.95
48437310--48437347	18	2.1	18	90	0	58	81	5	13	0	0.85
48438586--48438692	40	2.7	40	82	0	124	28	22	25	23	1.99
48438627--48438753	40	3.2	39	83	8	141	22	24	29	23	1.99
48445357--48445393	17	2.1	18	90	5	58	81	5	13	0	0.86
48445357--48445393	18	2.1	18	90	5	58	81	5	13	0	0.86
48446632--48446738	40	2.7	40	82	0	124	28	22	25	23	1.99
48446673--48446799	40	3.2	39	83	8	141	22	24	29	23	1.99
48451800--48451965	35	4.6	35	83	8	183	33	24	10	31	1.90
48451795--48451967	75	2.4	72	82	11	212	32	23	10	32	1.90
48458096--48458129	15	2.3	15	94	0	59	26	52	0	20	1.46
48461480--48461669	49	3.8	49	81	5	211	28	26	20	24	1.99
48464812--48464866	24	2.3	23	79	14	58	30	32	16	20	1.94
48471028--48471089	28	2.2	28	97	0	115	43	17	19	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476942--48476999	29	2.0	29	100	0	116	34	17	17	31	1.93
48481468--48481577	56	2.0	56	96	0	202	34	8	16	40	1.78
48489924--48489980	20	2.8	21	81	7	57	22	1	7	68	1.23
48492686--48492716	2	15.5	2	100	0	62	48	0	0	51	1.00
48493263--48493346	41	2.0	41	100	0	168	33	15	11	39	1.84
48496772--48496809	18	2.1	18	100	0	76	42	5	10	42	1.62
48497691--48497790	52	1.9	51	87	2	146	43	12	18	27	1.85
48501088--48501121	13	2.5	14	90	4	52	52	2	0	44	1.16
48505631--48505700	27	2.6	27	88	0	113	38	22	7	31	1.81
48505683--48505931	27	9.3	27	89	0	338	36	20	19	22	1.95
48506134--48506200	25	2.7	25	88	0	98	28	28	22	20	1.99
48508566--48508744	27	6.7	27	87	2	245	29	24	7	39	1.82
48508566--48508744	80	2.2	81	91	3	281	29	24	7	39	1.82
48508741--48508904	27	6.1	27	87	5	226	39	23	7	28	1.83
48508719--48508904	81	2.3	81	81	8	229	39	22	8	30	1.83
48508719--48508987	54	5.0	54	77	9	224	38	21	8	31	1.84
48508833--48508967	27	4.9	27	77	10	103	41	19	8	31	1.80
48509021--48509084	27	2.4	27	79	7	69	35	18	23	21	1.95
48509888--48509957	25	2.8	24	89	4	95	24	24	24	27	2.00
48509888--48509984	25	4.0	23	84	8	77	26	22	23	26	2.00
48510105--48510196	42	2.2	42	92	0	157	31	15	20	32	1.94
48510220--48510291	31	2.3	31	85	0	108	30	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48512540--48512606	27	2.5	27	87	2	100	37	22	7	32	1.82
48512591--48512866	107	2.6	108	92	0	446	36	20	18	23	1.94
48512591--48512866	27	10.3	27	92	0	419	36	20	18	23	1.94
48513069--48513138	25	2.8	25	82	8	97	27	24	24	24	2.00
48515496--48515690	27	7.2	27	85	0	219	30	24	6	37	1.81
48515496--48515690	54	3.6	54	83	4	241	30	24	6	37	1.81
48515478--48515690	81	2.6	81	86	1	275	31	23	6	37	1.81
48522040--48522169	40	3.2	40	77	13	142	24	26	24	23	2.00
48522056--48522207	40	3.8	40	80	5	155	22	26	24	26	2.00
48522056--48522207	80	1.9	80	83	5	200	22	26	24	26	2.00
48530074--48530182	40	2.8	38	87	5	139	22	29	24	22	1.99
48530074--48530222	78	1.9	78	83	5	194	22	27	24	25	2.00
48532699--48532882	40	4.6	39	75	6	138	26	23	27	22	2.00
48532739--48532927	80	2.4	81	77	4	186	23	24	29	22	1.99
48536503--48536685	40	4.6	40	95	1	316	22	22	28	26	1.99
48536499--48536717	80	2.8	80	87	6	322	25	21	26	26	1.99
48536944--48536987	22	2.0	21	83	16	54	31	18	13	36	1.90
48540986--48541016	15	2.1	15	93	0	53	19	0	25	54	1.44
48542681--48542899	40	5.5	39	84	5	226	23	26	23	26	2.00
48542681--48542901	80	2.7	79	83	2	271	23	26	23	26	2.00
48550791--48551007	40	5.4	40	85	2	240	23	26	23	26	2.00
48550821--48551009	79	2.4	80	83	3	247	24	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48553022--48553154	45	3.0	44	76	9	130	24	14	27	34	1.94
48555169--48555534	48	7.6	48	85	2	459	26	16	29	28	1.97
48558543--48558895	180	2.0	182	85	1	485	33	18	9	38	1.84
48559456--48559700	50	4.9	50	78	5	260	30	26	16	26	1.97
48571066--48571334	48	5.6	48	85	1	299	25	15	30	28	1.96
48574443--48574609	40	4.2	40	79	2	158	23	26	23	26	2.00
48574459--48574607	80	1.9	79	83	6	194	22	26	24	26	2.00
48582441--48582606	40	4.2	40	77	3	149	23	25	23	27	2.00
48582459--48582604	79	1.9	78	82	7	188	22	26	23	27	2.00
48583663--48583841	38	4.9	36	87	9	229	21	23	30	24	1.99
48586375--48586541	40	4.2	40	81	2	167	23	26	22	26	2.00
48586391--48586541	80	1.9	79	83	6	198	23	27	23	26	2.00
48594328--48594457	40	3.2	40	77	13	142	24	26	24	23	2.00
48594344--48594495	40	3.8	40	80	5	155	22	26	24	26	2.00
48594344--48594495	80	1.9	80	83	5	200	22	26	24	26	2.00
48599358--48599394	18	2.1	17	95	5	65	64	8	10	16	1.47
48609702--48609727	13	2.0	13	100	0	52	23	7	7	61	1.49
48611731--48611756	2	13.0	2	100	0	52	50	0	0	50	1.00
48619905--48619960	18	3.1	18	82	15	62	44	7	16	32	1.74
48620804--48620869	32	2.1	32	91	0	105	22	10	21	45	1.82
48622787--48622880	34	2.7	34	82	14	113	22	27	24	25	2.00
48626941--48627006	22	3.0	22	75	16	64	15	12	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48626943--48627031	42	2.1	44	85	4	119	16	13	22	47	1.82
48627503--48627632	28	4.6	28	83	3	118	40	16	22	20	1.91
48627503--48627632	56	2.3	56	81	5	138	40	16	22	20	1.91
48628331--48628523	60	3.2	60	79	1	206	33	13	24	27	1.94
48638405--48638477	29	2.5	29	90	0	92	24	31	16	27	1.96
48639647--48639702	24	2.3	24	84	9	69	7	16	1	75	1.11
48643095--48643150	24	2.3	24	84	9	69	7	16	1	75	1.11
48654834--48654936	29	3.6	28	81	5	116	21	16	33	29	1.95
48661938--48662029	27	3.4	27	83	0	112	23	20	19	35	1.95
48679085--48679136	27	2.0	26	84	3	68	34	21	26	17	1.95
48679786--48679877	27	3.4	27	89	0	130	22	19	20	36	1.95
48685494--48685616	49	2.5	49	81	2	140	25	28	18	27	1.98
48685675--48685940	46	5.8	44	82	8	293	22	28	19	30	1.98
48685674--48685945	138	2.0	138	91	1	438	22	27	19	29	1.98
48690495--48690544	24	2.1	24	100	0	100	54	8	4	34	1.49
48695275--48695314	21	2.0	21	95	5	73	10	40	30	20	1.85
48695921--48696043	49	2.5	49	85	2	158	23	30	19	26	1.98
48695863--48696043	98	1.9	97	80	5	213	23	29	20	25	1.99
48696105--48696508	46	8.8	46	78	8	396	24	28	17	29	1.97
48696126--48696502	137	2.8	137	94	0	646	23	28	17	30	1.97
48696105--48696508	91	4.4	92	77	8	396	24	28	17	29	1.97
48697548--48697587	21	1.9	21	85	10	55	47	22	5	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48697924--48698024	50	2.0	50	100	0	202	33	13	19	32	1.91
48704638--48704845	44	4.8	43	81	8	221	25	16	26	31	1.97
48711317--48711419	29	3.6	29	87	0	143	26	15	33	25	1.95
48713866--48713929	27	2.4	27	91	0	110	21	10	32	34	1.89
48716999--48717066	22	3.1	22	71	21	54	27	2	20	48	1.64
48720156--48720206	20	2.7	19	82	14	54	41	0	21	37	1.54
48720776--48720895	46	2.6	44	85	10	136	30	20	26	21	1.98
48723973--48724041	30	2.3	30	82	9	79	47	4	2	44	1.37
48726547--48726598	24	2.2	24	82	0	59	53	11	3	30	1.54
48730402--48730439	2	18.5	2	94	5	67	50	2	0	47	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438