genome.fa.s3.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  120  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35192546--35192690	40	3.6	40	86	4	202	22	26	25	25	2.00
35199458--35199527	34	2.1	34	100	0	140	14	5	31	48	1.67
35204671--35204708	20	1.9	20	88	0	58	26	13	15	44	1.83
35207571--35207714	46	3.1	44	72	15	123	29	28	20	22	1.98
35209109--35209231	24	5.1	24	94	2	212	27	20	22	29	1.98
35213061--35213125	32	2.0	32	96	0	121	33	16	15	33	1.91
35215637--35215666	15	2.1	14	93	6	51	56	6	0	36	1.26
35215920--35215977	27	2.1	27	96	0	107	43	8	10	37	1.70
35217295--35217382	45	2.0	45	88	0	131	26	12	22	38	1.90
35220795--35220902	39	2.8	39	86	0	153	24	19	28	27	1.98
35220787--35220930	78	1.8	78	83	2	191	23	20	27	28	1.99
35223444--35223519	37	2.1	37	100	0	152	31	17	23	27	1.97
35236248--35236299	27	1.9	27	84	7	70	36	13	1	48	1.54
35238232--35238377	46	3.2	46	73	13	131	30	28	18	22	1.97
35241041--35241125	27	3.2	26	77	3	71	41	17	18	22	1.91
35255814--35256015	39	5.2	38	81	4	188	15	30	19	35	1.92
35255835--35256008	78	2.2	78	83	4	208	16	30	18	35	1.93
35255870--35255930	20	3.1	20	63	13	54	16	34	14	34	1.89
35256811--35256870	27	2.3	26	85	2	75	35	20	23	21	1.96
35257552--35257605	27	2.0	27	85	3	74	35	20	22	22	1.96
35257607--35257670	27	2.4	27	86	0	83	26	23	15	34	1.95
35264522--35264725	40	5.1	40	84	2	239	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35266138--35266210	36	2.2	32	79	15	78	28	13	21	35	1.92
35266154--35266210	19	3.1	19	69	19	57	28	14	19	38	1.90
35268000--35268183	40	4.6	39	75	6	138	26	23	27	22	2.00
35268040--35268228	80	2.4	81	77	4	186	23	24	29	22	1.99
35272462--35272637	40	4.4	40	90	0	255	25	27	22	25	2.00
35276791--35276893	29	3.6	27	81	5	98	29	33	16	21	1.95
35285871--35286047	40	4.5	40	92	1	277	24	27	23	24	2.00
35293458--35293634	40	4.5	40	87	1	241	25	25	23	24	2.00
35296328--35296521	105	1.8	105	92	0	325	26	25	18	30	1.98
35297028--35297125	32	3.1	32	98	0	187	28	25	6	39	1.79
35298634--35298757	44	2.9	43	82	10	121	24	25	24	25	2.00
35299086--35299324	43	5.6	42	93	3	374	30	32	24	12	1.92
35299322--35299396	38	2.0	38	89	0	114	30	26	21	21	1.98
35309820--35309986	40	4.2	40	79	2	158	23	26	23	26	2.00
35317803--35317969	40	4.2	40	79	2	158	23	26	23	26	2.00
35322218--35322441	56	4.0	56	90	0	331	35	23	12	28	1.92
35323348--35323399	27	1.9	27	84	7	70	42	7	0	50	1.31
35331173--35331298	40	3.2	40	90	2	184	25	23	26	25	2.00
35331173--35331325	38	3.9	38	88	1	171	26	23	25	24	2.00
35331329--35331655	43	7.6	43	93	0	537	10	25	33	31	1.89
35337133--35337168	15	2.3	16	90	4	56	11	25	13	50	1.75
35341376--35341465	29	3.2	29	82	3	103	30	27	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35341674--35341714	16	2.7	15	88	7	64	7	17	21	53	1.67
35341681--35341715	16	2.2	16	100	0	70	5	17	22	54	1.64
35347945--35348072	47	2.7	47	82	5	154	28	16	29	25	1.97
35363864--35363954	37	2.4	37	96	1	164	25	32	18	23	1.97
35363994--35364193	48	4.2	48	95	0	355	33	28	6	32	1.81
35364185--35364611	47	8.9	47	91	3	674	28	28	8	34	1.87
35364185--35364611	96	4.4	96	93	2	723	28	28	8	34	1.87
35364186--35364611	145	3.0	143	95	2	771	28	28	8	34	1.87
35379259--35379306	2	24.0	2	100	0	96	50	0	0	50	1.00
35379641--35379699	26	2.3	26	97	2	111	16	23	10	49	1.77
35379886--35380879	508	1.9	512	83	5	1264	33	19	13	34	1.90
35382851--35382939	39	2.3	39	84	0	115	48	14	8	28	1.74
35384627--35384661	17	2.1	16	89	5	52	8	20	0	71	1.11
35384704--35384749	24	1.9	24	82	8	58	8	21	2	67	1.29
35385897--35385921	13	1.9	13	100	0	50	24	0	4	72	1.02
35394640--35394959	47	6.8	48	79	11	288	24	31	18	26	1.97
35394637--35394954	93	3.4	95	76	12	316	24	30	17	26	1.97
35398983--35399106	39	3.2	39	87	1	176	25	32	20	22	1.98
35406915--35407060	39	3.7	40	85	0	161	23	30	21	23	1.99
35406945--35407068	39	3.2	39	88	1	185	25	31	20	23	1.98
35410422--35410467	22	2.0	22	83	8	56	28	21	32	17	1.96
35411991--35412060	27	2.5	28	86	2	97	32	25	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35412068--35412174	42	2.5	42	96	0	196	22	33	14	28	1.94
35419221--35419290	27	2.5	28	86	2	97	32	25	14	27	1.94
35419298--35419404	42	2.5	42	96	0	196	22	33	14	28	1.94
35422342--35422397	28	2.0	28	100	0	112	35	10	28	25	1.89
35424048--35424347	46	6.3	47	73	13	192	24	30	18	26	1.97
35429922--35430067	37	3.9	37	93	0	247	27	30	19	22	1.98
35430216--35430317	50	2.0	50	84	3	134	31	25	7	35	1.85
35430230--35430335	50	2.1	50	82	3	124	29	28	8	33	1.87
35434262--35434610	40	8.8	40	84	1	452	26	26	21	25	1.99
35434262--35434610	79	4.4	79	88	2	520	26	26	21	25	1.99
35434262--35434610	159	2.2	158	88	1	538	26	26	21	25	1.99
35435880--35435988	37	2.9	37	95	0	191	28	30	19	22	1.98
35436123--35436224	50	2.0	50	88	3	152	32	25	5	36	1.80
35436137--35436263	50	2.5	50	84	5	157	29	28	7	33	1.85
35437639--35437806	40	4.2	40	85	5	207	26	28	22	23	1.99
35437639--35437806	80	2.1	80	87	4	241	26	28	22	23	1.99
35449098--35449127	15	2.0	15	100	0	60	40	26	6	26	1.81
35449097--35449133	15	2.7	13	84	15	56	37	24	5	32	1.78
35451500--35451670	93	1.8	93	91	5	283	28	28	21	22	1.99
35451492--35451666	46	3.8	46	79	11	198	28	28	20	22	1.99
35451543--35451686	46	3.1	45	73	22	122	28	28	20	22	1.98
35454016--35454063	15	3.2	15	80	11	62	58	14	14	12	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35458572--35458629	30	1.9	30	89	0	89	43	6	22	27	1.79
35460613--35460646	16	2.2	16	89	5	52	29	23	8	38	1.85
35469173--35469355	40	4.6	40	78	8	201	25	22	25	25	2.00
35469177--35469355	83	2.2	80	85	6	229	25	23	26	25	2.00
35479401--35479501	28	3.5	28	86	6	114	29	13	26	29	1.94
35487362--35487462	28	3.5	28	86	6	114	29	13	26	29	1.94
35489170--35489221	20	2.6	20	96	0	95	11	32	34	21	1.89
35492012--35492075	26	2.5	26	86	0	83	39	23	12	25	1.90
35492001--35492092	26	3.5	26	76	2	69	39	26	13	21	1.90
35501032--35501067	13	2.7	13	86	4	54	47	0	0	52	1.00
35501026--35501067	14	3.0	14	82	10	59	50	0	0	50	1.00
35501174--35501263	10	9.2	10	68	18	64	34	7	0	57	1.27
35501176--35501263	19	4.5	19	72	12	72	34	7	0	57	1.28
35502042--35502096	21	2.6	21	68	23	51	25	10	0	63	1.27
35505102--35505144	22	2.0	22	86	4	61	48	16	2	32	1.58
35510218--35510251	8	4.2	8	100	0	68	26	26	0	47	1.53
35513687--35513894	30	6.9	29	78	12	188	48	13	17	20	1.81
35513708--35513875	6	27.8	6	80	14	186	48	13	17	20	1.80
35513708--35513875	91	1.9	90	97	0	291	48	13	17	20	1.80
35514012--35514077	27	2.5	26	85	7	87	37	22	22	16	1.93
35514012--35514085	27	2.8	27	78	13	82	36	21	24	17	1.95
35514036--35514093	27	2.1	27	84	6	73	36	27	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35514396--35514478	27	3.1	26	87	5	112	37	21	21	19	1.94
35514666--35514778	54	2.1	54	81	0	127	28	17	21	32	1.96
35514695--35514818	27	4.6	27	83	0	158	26	15	19	38	1.91
35514693--35514818	54	2.3	54	89	2	182	27	15	19	38	1.91
35514823--35515070	27	9.2	27	83	3	284	41	10	20	27	1.84
35514812--35515070	108	2.4	108	89	1	387	41	10	20	27	1.85
35514811--35515101	54	5.4	54	79	9	308	39	10	21	28	1.86
35514830--35515101	81	3.4	79	79	10	223	39	9	22	28	1.86
35517336--35517541	40	5.1	41	78	5	154	21	26	23	27	1.99
35517393--35517543	80	1.9	80	85	0	212	23	26	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438