genome.fa.s3.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  154  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46730705--46730814	6	17.8	6	74	15	91	49	14	18	18	1.80
46730716--46730785	19	3.7	19	77	11	81	50	17	17	15	1.79
46730700--46730814	31	3.7	31	73	14	110	48	14	17	19	1.81
46730707--46730792	37	2.3	37	85	0	118	48	16	17	17	1.81
46730747--46730814	25	2.7	25	88	0	100	47	14	19	19	1.83
46730917--46731070	67	2.3	67	94	0	272	31	20	28	19	1.97
46731000--46731051	27	2.0	26	84	3	68	38	21	23	17	1.93
46731299--46731517	27	8.1	27	82	3	235	25	18	19	36	1.94
46731285--46731393	54	2.0	54	82	3	130	29	22	17	30	1.97
46731299--46731517	80	2.7	81	84	2	253	25	18	19	36	1.94
46731522--46732180	27	24.4	27	85	3	788	40	8	22	28	1.83
46733832--46733939	37	2.9	37	91	0	171	24	32	19	24	1.98
46733984--46734513	48	11.0	48	93	0	846	30	27	6	35	1.82
46736325--46736491	40	4.2	40	82	2	185	25	27	21	25	1.99
46736325--46736491	80	2.1	79	83	7	205	25	27	21	25	1.99
46737315--46737360	17	2.5	19	74	22	53	34	23	17	23	1.96
46744334--46744500	40	4.2	40	82	2	185	25	27	21	25	1.99
46744334--46744500	80	2.1	79	83	7	205	25	27	21	25	1.99
46745323--46745368	17	2.5	19	74	22	53	34	23	17	23	1.96
46750220--46750276	11	5.5	10	73	22	55	78	1	17	1	0.91
46750220--46750276	5	11.0	5	75	20	55	78	1	17	1	0.91
46750345--46750369	12	2.1	12	100	0	50	76	0	16	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46750345--46750426	30	2.7	31	79	5	96	65	1	20	12	1.32
46752690--46752834	40	3.6	40	85	4	193	22	26	24	26	2.00
46759265--46759408	39	3.7	39	90	0	234	22	29	20	27	1.98
46769442--46769533	40	2.3	40	94	0	157	25	29	21	23	1.99
46769446--46769663	40	5.4	40	78	7	131	26	28	20	24	1.99
46771628--46771827	48	4.2	48	97	0	373	32	28	6	33	1.83
46771843--46771878	18	2.0	18	88	0	54	33	22	11	33	1.89
46771740--46771985	123	2.0	123	99	0	483	32	26	8	32	1.87
46771896--46772235	49	6.6	54	87	6	234	30	26	9	33	1.88
46771942--46772235	49	5.9	49	89	5	430	29	26	9	34	1.89
46775252--46775318	21	3.2	21	81	8	82	32	22	29	14	1.94
46782097--46782149	26	2.0	26	100	0	106	39	18	7	33	1.79
46784903--46784977	37	2.0	37	100	0	150	21	29	30	18	1.97
46788408--46788583	46	3.8	46	77	14	200	20	19	29	30	1.97
46788405--46788576	93	1.8	93	93	2	301	20	20	29	29	1.98
46805567--46805611	7	6.4	7	81	0	54	20	46	0	33	1.51
46809148--46809274	40	3.2	39	76	8	130	22	28	24	24	2.00
46809164--46809314	40	3.8	40	77	6	137	23	26	23	26	2.00
46809164--46809313	80	1.9	80	83	8	198	22	26	24	26	2.00
46818260--46818313	28	2.0	28	88	3	83	48	3	3	44	1.38
46823148--46823348	108	1.8	110	86	4	291	23	24	17	34	1.96
46823146--46823356	55	3.9	53	77	7	210	23	24	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46825370--46825460	26	3.8	23	73	9	67	17	20	20	40	1.91
46829779--46829929	40	3.8	40	77	13	134	27	23	26	22	2.00
46829816--46829945	40	3.2	40	77	4	138	24	23	27	23	2.00
46847922--46848051	40	3.2	40	77	13	142	24	26	24	23	2.00
46847938--46848089	40	3.8	40	80	5	155	22	26	24	26	2.00
46847938--46848089	80	1.9	80	83	5	200	22	26	24	26	2.00
46851652--46851821	87	1.9	88	79	3	191	41	17	7	34	1.77
46851921--46851991	10	7.4	10	75	12	69	70	1	1	26	1.04
46851920--46851991	11	6.4	11	75	15	67	70	1	1	26	1.03
46851946--46851991	20	2.3	20	89	10	76	69	0	0	30	0.89
46852174--46852309	57	2.4	57	79	13	138	30	3	2	63	1.26
46854091--46854146	26	2.2	26	86	0	76	48	5	10	35	1.61
46854488--46854544	22	2.6	21	72	13	53	38	5	0	56	1.22
46857372--46857411	11	3.6	11	82	0	53	22	15	5	57	1.57
46857634--46857666	11	2.9	12	86	13	52	66	0	0	33	0.92
46860312--46860708	49	8.1	49	94	1	690	34	10	26	28	1.89
46860782--46860863	37	2.2	36	93	4	137	20	21	34	23	1.97
46864722--46864774	21	2.5	21	81	0	70	45	9	18	26	1.80
46865836--46865877	21	2.0	21	100	0	84	28	28	4	38	1.77
46869260--46869389	40	3.2	40	79	2	154	23	28	23	23	2.00
46869276--46869425	40	3.8	40	77	6	119	22	26	24	27	2.00
46872804--46872829	11	2.4	11	100	0	52	57	15	0	26	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46879283--46879432	46	3.1	46	75	14	167	30	28	16	26	1.96
46880523--46880595	21	3.5	21	90	0	110	32	24	27	15	1.95
46880510--46880616	21	5.0	22	82	7	105	36	23	23	16	1.94
46880821--46880956	29	5.0	28	91	5	192	47	30	3	18	1.66
46891218--46891304	45	1.9	45	95	0	156	27	12	22	36	1.91
46891222--46891291	21	3.2	21	64	18	52	24	12	22	40	1.89
46895248--46895281	18	1.9	18	88	5	52	29	14	14	41	1.86
46896510--46896603	28	3.4	28	81	0	116	25	32	15	25	1.96
46902064--46902331	47	5.7	46	72	12	163	23	28	18	29	1.98
46902062--46902373	46	6.7	46	72	13	176	23	27	18	29	1.98
46902119--46902376	140	1.8	139	85	6	360	23	28	18	29	1.98
46906540--46906565	12	2.2	12	100	0	52	30	0	11	57	1.34
46912086--46912128	13	3.3	13	86	0	50	18	27	25	27	1.98
46913107--46913278	47	3.7	47	81	13	221	25	30	16	27	1.97
46913107--46913323	46	4.7	46	81	12	221	24	29	17	28	1.97
46913107--46913277	94	1.8	94	96	0	315	25	30	16	27	1.96
46917087--46917237	40	3.8	40	77	13	134	27	23	26	22	2.00
46917124--46917253	40	3.2	40	77	4	138	24	23	27	23	2.00
46925093--46925243	40	3.8	40	77	13	134	27	23	26	22	2.00
46925130--46925259	40	3.2	40	77	4	138	24	23	27	23	2.00
46933299--46933359	30	2.0	30	83	0	77	31	22	8	37	1.84
46938513--46938643	29	4.6	29	83	2	131	25	17	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46938513--46938584	28	2.5	28	95	2	126	27	15	30	26	1.96
46946242--46946315	29	2.6	29	93	0	130	28	14	31	25	1.95
46946299--46946374	29	2.6	29	82	0	98	23	19	34	22	1.97
46946242--46946374	58	2.3	58	81	2	142	26	17	32	24	1.97
46947886--46948047	71	2.3	71	96	0	297	35	16	29	19	1.94
46953319--46953505	40	4.7	40	89	2	270	25	28	21	23	1.99
46953299--46953509	79	2.7	78	88	5	307	27	27	21	23	1.99
46963416--46963603	40	4.7	40	89	1	261	26	28	21	23	1.99
46963396--46963607	80	2.7	79	87	3	300	27	27	20	24	1.99
46967952--46968127	39	4.5	39	91	0	280	28	28	23	19	1.98
46968085--46968237	78	2.0	77	79	7	166	27	24	20	27	1.99
46968141--46968251	39	2.8	39	94	0	186	27	24	19	28	1.99
46972044--46972202	27	5.9	26	84	10	180	33	22	25	18	1.97
46972062--46972205	54	2.7	54	94	4	247	33	23	25	17	1.96
46972595--46972624	8	3.8	8	90	0	51	3	26	26	43	1.70
46973791--46973895	26	4.0	26	97	0	201	35	25	7	31	1.84
46977409--46977722	48	6.6	48	86	2	400	24	16	30	28	1.97
46977409--46977735	95	3.4	95	85	5	399	24	16	30	28	1.97
46977409--46977738	142	2.3	144	84	2	450	24	16	30	28	1.97
46977409--46977774	95	3.8	95	82	5	373	24	16	30	28	1.97
46997705--46998022	48	6.6	48	84	1	388	25	16	29	27	1.97
46997705--46998070	144	2.5	144	81	3	414	26	17	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46997705--46998108	96	4.3	95	83	5	394	27	17	27	26	1.98
47003743--47003925	39	4.6	39	86	0	231	24	21	30	23	1.99
47011172--47011354	39	4.6	39	87	0	240	24	22	30	22	1.99
47016939--47017064	49	2.7	46	80	8	137	28	26	17	27	1.98
47023266--47023501	50	4.7	49	78	6	233	30	24	17	27	1.97
47023266--47023501	101	2.4	99	83	4	278	30	24	17	27	1.97
47030202--47030230	2	14.5	2	100	0	58	51	0	0	48	1.00
47032226--47032286	30	2.0	30	83	0	77	31	22	8	37	1.84
47034184--47034631	27	16.6	27	86	3	562	28	22	8	40	1.84
47040264--47040324	30	2.0	30	83	0	77	31	22	8	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438