genome.fa.s3.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  183  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56466134--56466164	15	2.1	15	93	0	53	32	3	0	64	1.09
56467248--56467285	17	2.3	17	86	4	51	42	5	2	50	1.39
56470789--56470965	80	2.2	79	81	4	196	25	27	21	25	1.99
56470803--56470965	40	4.1	39	80	7	175	25	27	21	25	1.99
56479806--56480069	49	5.4	49	96	0	456	28	9	33	29	1.88
56480171--56480292	37	3.3	37	97	0	226	25	19	33	21	1.97
56482103--56482187	40	2.1	40	82	0	98	28	21	27	23	1.99
56482385--56482693	29	10.7	29	98	0	582	27	17	31	23	1.97
56485992--56486255	49	5.4	49	96	0	456	28	9	33	29	1.88
56486357--56486478	37	3.3	37	97	0	226	25	19	33	21	1.97
56489919--56490139	40	5.6	40	81	4	243	25	26	23	25	2.00
56497625--56497844	40	5.6	40	79	3	223	24	25	23	26	2.00
56500348--56500531	40	4.6	39	75	6	138	26	23	27	22	2.00
56500388--56500576	80	2.4	81	77	4	186	23	24	29	22	1.99
56506732--56506905	46	3.8	46	79	13	214	20	21	29	28	1.98
56509855--56509923	15	4.6	15	83	0	84	11	17	13	57	1.64
56509845--56509941	30	3.2	31	78	12	103	10	16	16	56	1.66
56511847--56512022	46	3.8	46	80	12	225	21	21	28	28	1.98
56511844--56512014	93	1.8	93	96	0	315	21	21	29	28	1.98
56514976--56515044	15	4.6	15	83	0	84	11	17	13	57	1.64
56514967--56515054	30	3.0	30	81	8	99	10	17	15	56	1.66
56516971--56517146	46	3.8	46	79	12	216	21	21	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56516968--56517138	93	1.8	93	94	0	306	21	21	28	28	1.98
56521364--56521411	24	2.0	24	100	0	96	33	25	8	33	1.86
56530734--56530967	40	5.9	40	91	0	371	27	23	26	22	1.99
56530734--56530994	120	2.2	119	86	4	364	28	23	26	21	1.99
56539977--56540181	40	5.2	40	92	2	317	27	27	21	22	1.99
56539977--56540181	79	2.6	80	91	3	317	27	27	21	22	1.99
56547497--56547580	40	2.1	40	93	0	141	29	20	23	26	1.99
56547515--56547645	66	2.0	67	93	1	228	29	16	24	29	1.97
56547585--56547784	40	5.0	40	89	4	289	25	20	26	28	1.99
56554931--56555037	40	2.7	40	82	0	124	28	22	25	23	1.99
56554972--56555098	40	3.2	39	83	8	141	22	24	29	23	1.99
56561695--56561865	93	1.8	93	92	2	290	28	29	21	21	1.98
56561687--56561862	46	3.8	47	80	12	211	28	28	20	21	1.98
56565594--56565644	20	2.5	21	76	20	63	39	15	9	35	1.81
56568701--56568781	43	1.9	41	82	5	99	29	13	25	30	1.94
56572095--56572197	29	3.6	28	81	5	116	21	16	33	29	1.95
56580128--56580230	29	3.6	28	81	5	116	21	16	33	29	1.95
56591404--56591611	40	5.2	40	81	2	175	25	23	24	25	2.00
56591406--56591611	80	2.6	80	82	3	218	25	23	24	25	2.00
56597096--56597195	29	3.4	29	78	0	110	28	32	12	28	1.92
56598209--56598238	4	7.5	4	100	0	60	76	0	0	23	0.78
56607038--56607119	43	1.9	43	92	0	137	30	28	21	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56610647--56610757	27	4.1	26	80	7	123	37	21	23	17	1.93
56611245--56612011	382	2.0	382	97	0	1462	30	28	13	27	1.94
56612328--56612360	16	2.1	16	94	0	57	54	6	33	6	1.50
56614224--56614322	28	3.5	28	81	9	112	29	25	16	29	1.96
56621723--56621827	27	3.9	25	75	12	84	40	20	20	18	1.91
56623826--56623970	53	2.7	53	85	5	177	29	21	13	35	1.91
56624998--56625032	16	2.2	16	100	0	70	40	5	22	31	1.78
56625215--56625338	58	2.1	58	83	2	151	50	3	1	45	1.27
56630441--56630563	22	5.5	21	75	12	104	34	18	21	26	1.96
56630455--56630563	45	2.4	45	84	3	148	35	16	22	25	1.94
56632014--56632071	30	1.9	30	83	13	75	34	22	0	43	1.54
56636448--56636547	51	2.0	51	88	4	148	32	26	17	25	1.97
56641401--56641588	49	3.8	49	83	2	259	26	19	25	29	1.98
56641396--56641594	100	2.0	100	94	0	353	25	20	25	29	1.99
56647029--56647159	49	2.6	49	86	2	181	25	19	25	29	1.99
56648772--56648977	40	5.2	40	91	1	308	22	21	27	28	1.99
56652695--56652952	40	6.5	40	93	1	421	25	27	22	24	2.00
56656403--56656472	27	2.5	28	88	2	106	31	25	14	28	1.95
56663127--56663298	93	1.8	93	96	0	317	27	30	22	20	1.98
56663119--56663294	46	3.8	46	81	10	232	28	29	21	20	1.98
56665676--56665764	30	3.0	30	80	8	101	57	15	16	10	1.65
56665676--56665755	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56665687--56665764	15	5.2	15	78	9	79	56	15	16	11	1.67
56668675--56668846	93	1.8	93	96	0	317	27	30	22	20	1.98
56668667--56668842	46	3.8	46	81	10	232	28	29	21	20	1.98
56672449--56672555	43	2.5	42	83	11	121	27	14	24	33	1.95
56672440--56672596	43	3.7	43	77	6	115	29	14	24	32	1.94
56677028--56677195	40	4.2	40	81	3	180	25	26	22	25	2.00
56681219--56681266	25	1.9	25	82	0	60	33	22	16	27	1.96
56681314--56681369	11	5.5	11	71	16	57	35	12	19	32	1.89
56681303--56681369	20	3.3	20	91	0	107	34	11	22	31	1.90
56681418--56681514	25	4.0	24	85	9	126	29	20	21	27	1.98
56681418--56681514	48	2.0	49	84	9	128	29	20	21	27	1.98
56681707--56681767	31	2.0	31	90	0	95	31	16	27	24	1.96
56687840--56688004	43	3.9	43	75	11	142	30	13	23	32	1.93
56691226--56691331	41	2.5	43	78	4	117	28	15	22	33	1.94
56694445--56694531	43	2.0	43	86	4	122	29	29	17	22	1.97
56700083--56700127	24	2.0	23	86	8	65	33	15	22	28	1.95
56701255--56701283	14	2.1	14	100	0	58	37	6	13	41	1.72
56709729--56709760	2	16.0	2	93	0	55	50	3	0	46	1.17
56710393--56710546	27	5.5	27	80	4	164	28	14	25	31	1.94
56710443--56710546	55	1.9	55	97	0	199	26	12	24	36	1.91
56713818--56713931	27	4.3	27	86	4	144	30	14	14	39	1.87
56713818--56713982	54	3.1	53	81	9	151	30	12	16	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56713831--56714019	27	7.0	27	77	7	129	29	11	20	38	1.88
56713831--56714009	54	3.3	53	80	8	150	29	10	19	40	1.85
56714843--56714896	22	2.5	22	96	0	99	31	24	22	22	1.98
56715554--56715593	18	2.2	18	86	0	53	80	5	15	0	0.88
56717799--56717947	80	1.9	80	81	2	183	22	30	24	22	1.99
56717840--56717947	40	2.7	38	85	8	128	21	29	25	23	1.99
56724867--56725074	40	5.2	40	87	3	287	22	27	24	25	2.00
56732986--56733195	40	5.2	40	88	2	305	21	28	24	25	1.99
56736611--56736754	57	2.5	56	82	12	161	27	32	13	27	1.93
56736612--56736736	29	4.4	28	78	11	146	26	31	14	28	1.95
56745281--56745427	40	3.7	40	84	4	172	25	22	27	23	2.00
56751269--56751401	27	4.9	27	79	1	142	25	21	16	36	1.94
56751269--56751388	54	2.2	54	84	0	159	25	23	15	35	1.94
56752856--56752970	31	3.7	31	90	1	178	28	24	16	30	1.96
56752994--56753085	42	2.2	42	98	0	175	33	20	15	30	1.93
56753233--56753302	25	2.8	25	91	4	106	24	24	27	24	2.00
56754111--56754175	27	2.4	27	79	5	69	23	24	16	35	1.95
56754229--56754314	27	3.1	27	72	22	79	34	9	15	40	1.79
56754278--56754442	27	6.1	27	77	7	147	29	7	21	41	1.81
56754291--56754442	54	2.8	54	77	4	164	28	7	22	41	1.81
56754293--56754475	81	2.3	81	81	7	194	28	10	20	40	1.85
56754474--56754668	27	7.3	27	88	3	259	39	8	22	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56754474--56754668	80	2.4	81	87	3	295	39	8	22	29	1.83
56761945--56761991	19	2.5	19	86	3	60	25	19	36	19	1.95
56762064--56762175	28	4.0	28	82	9	138	30	13	30	25	1.94
56763254--56763286	17	1.9	17	100	0	66	39	18	6	36	1.75
56765844--56766063	40	5.6	40	81	3	241	25	24	25	24	2.00
56768849--56769133	40	7.1	40	93	0	462	24	20	29	25	1.99
56771231--56771300	27	2.5	28	90	2	106	28	14	28	28	1.95
56771232--56771340	55	2.0	55	82	7	132	29	13	25	31	1.94
56774488--56774671	40	4.6	39	75	6	138	26	23	27	22	2.00
56774528--56774716	80	2.4	81	77	4	186	23	24	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438