genome.fa.s3.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  225  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69271393--69271425	7	4.7	7	100	0	66	15	54	0	30	1.41
69273642--69273673	2	16.0	2	100	0	64	50	0	0	50	1.00
69274924--69275025	52	2.0	52	94	3	179	40	13	23	22	1.90
69276301--69276442	40	3.5	40	83	1	124	27	23	26	22	1.99
69276340--69276468	40	3.2	39	84	6	152	24	22	27	25	2.00
69284298--69284439	40	3.5	40	83	1	124	27	23	26	22	1.99
69284337--69284465	40	3.2	39	84	6	152	24	22	27	25	2.00
69285966--69286139	46	3.8	46	78	13	180	20	22	28	28	1.99
69285974--69286144	45	3.7	45	77	15	188	21	21	28	29	1.98
69287683--69287723	16	2.5	17	88	8	66	12	4	34	48	1.62
69288622--69288679	23	2.5	23	100	0	116	39	27	20	12	1.88
69288722--69288773	24	2.2	24	86	6	70	32	21	26	19	1.97
69290092--69290150	28	2.1	28	100	0	118	44	6	10	38	1.65
69290667--69290740	41	1.9	37	86	13	105	29	5	21	43	1.75
69310919--69310988	25	2.8	25	88	0	104	24	21	25	28	1.99
69311796--69311873	27	2.9	26	76	14	86	20	19	21	38	1.94
69311931--69312128	81	2.4	81	76	9	206	30	7	18	42	1.78
69311914--69312134	27	8.1	27	78	7	151	32	8	17	41	1.79
69311976--69312210	27	8.7	27	75	5	143	31	7	20	40	1.80
69313133--69313286	42	3.6	42	76	15	154	32	24	17	25	1.97
69313123--69313283	44	3.8	43	76	11	152	31	24	17	26	1.97
69313123--69313286	43	3.8	43	75	16	160	31	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69318251--69318381	38	3.2	38	73	21	138	30	24	16	29	1.96
69318308--69318429	48	2.6	48	88	1	165	32	23	13	29	1.94
69322415--69322439	6	4.2	6	100	0	50	16	32	16	36	1.90
69326906--69327420	49	10.7	49	92	4	798	29	29	7	33	1.85
69326906--69327402	241	2.1	240	91	2	807	28	29	8	33	1.86
69330275--69330306	2	16.0	2	100	0	64	50	0	0	50	1.00
69331644--69331670	2	13.5	2	100	0	54	51	0	0	48	1.00
69338366--69338406	19	2.2	19	86	8	57	0	24	0	75	0.80
69340260--69340429	43	4.0	42	78	8	155	24	14	26	34	1.94
69340315--69340406	42	2.2	42	80	2	103	28	15	23	32	1.95
69343214--69343377	71	2.3	71	97	0	310	34	18	28	18	1.95
69350746--69350908	70	2.3	71	98	1	319	34	17	28	19	1.94
69357495--69357615	47	2.6	47	97	0	224	36	14	23	25	1.93
69357595--69357899	55	5.6	54	83	6	368	35	18	24	21	1.96
69357603--69357899	108	2.7	108	91	0	477	34	18	24	21	1.96
69380558--69380621	31	2.1	31	90	0	101	25	23	15	35	1.94
69380814--69380977	23	7.0	24	90	5	255	29	20	20	28	1.98
69380834--69380976	47	3.1	47	95	1	261	30	20	20	28	1.97
69381035--69381091	9	5.9	9	73	15	51	35	21	8	35	1.84
69381031--69381093	20	3.2	20	95	0	117	31	19	12	36	1.89
69381128--69381175	25	1.9	25	86	0	69	25	16	25	33	1.96
69388104--69388233	48	2.7	48	91	0	206	34	7	27	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69388273--69388398	36	3.4	37	92	5	202	24	17	31	26	1.97
69390221--69390529	40	7.8	40	95	2	543	25	20	27	26	1.99
69390227--69390529	118	2.6	118	95	0	543	25	20	27	26	1.99
69394515--69394644	48	2.7	48	91	0	206	34	7	27	30	1.85
69394684--69394811	37	3.4	37	94	1	211	25	18	30	25	1.98
69399581--69399746	24	7.0	24	89	10	252	28	21	20	29	1.98
69399602--69399745	46	3.1	47	95	4	256	29	20	20	29	1.98
69399804--69399860	9	5.9	9	73	15	51	35	21	8	35	1.84
69399802--69399862	20	3.0	20	95	0	113	32	19	11	36	1.88
69399899--69399946	25	1.9	25	86	0	69	25	16	25	33	1.96
69404977--69405023	19	2.5	19	77	19	53	25	2	8	63	1.34
69410052--69410082	16	1.9	16	93	0	53	45	9	9	35	1.70
69416157--69416252	27	3.6	27	82	0	102	38	21	20	18	1.93
69416393--69416480	27	3.3	27	82	3	88	20	18	20	40	1.91
69416488--69416804	27	11.7	27	80	4	246	30	9	19	39	1.84
69416488--69416804	81	3.9	81	78	5	273	30	9	19	39	1.84
69417217--69417264	23	2.1	23	100	0	96	16	20	25	37	1.93
69418815--69418885	27	2.6	27	93	0	115	18	18	25	38	1.93
69421082--69421174	27	3.4	28	80	7	111	20	17	24	37	1.93
69422664--69422773	40	2.8	40	84	0	139	23	25	23	27	2.00
69428710--69428744	13	2.6	14	90	4	54	48	28	8	14	1.73
69431003--69431144	40	3.5	40	83	1	124	27	23	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69431042--69431170	40	3.2	39	84	6	152	24	22	27	25	2.00
69439015--69439181	40	4.2	40	79	6	169	26	22	26	24	2.00
69443035--69443118	31	2.7	31	92	1	134	27	25	17	29	1.98
69443142--69443233	42	2.2	42	92	3	150	34	22	13	29	1.92
69443377--69443551	26	6.8	26	92	0	273	26	22	22	27	1.99
69444340--69444403	27	2.4	27	81	5	76	21	25	17	35	1.95
69444434--69444806	27	13.8	27	76	4	169	32	9	20	37	1.85
69444465--69444620	81	1.9	81	81	5	190	28	10	19	41	1.84
69444704--69444779	28	2.7	28	80	13	84	27	5	23	43	1.75
69444734--69444807	28	2.7	28	87	2	96	28	8	21	41	1.81
69444819--69444891	27	2.7	27	93	0	119	36	9	24	28	1.87
69445922--69445958	16	2.2	17	90	4	58	29	5	5	59	1.42
69452241--69452408	40	4.2	40	82	1	185	24	26	22	26	2.00
69460910--69461080	46	3.7	46	78	14	208	29	28	19	22	1.98
69460915--69461084	92	1.8	93	94	1	306	29	28	20	21	1.98
69466421--69466591	93	1.8	93	94	0	306	28	28	21	21	1.99
69466416--69466588	46	3.7	46	77	13	201	29	27	21	21	1.99
69468547--69468651	42	2.5	42	75	3	104	33	24	14	27	1.94
69468632--69468670	19	2.1	19	100	0	78	35	25	15	23	1.94
69473735--69473799	29	2.2	29	97	0	121	29	16	27	26	1.97
69473900--69473932	2	16.5	2	100	0	66	48	0	0	51	1.00
69484523--69484645	29	4.2	29	96	0	228	30	15	26	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69484524--69484682	58	2.7	58	89	1	203	27	15	30	25	1.96
69484523--69484682	87	1.8	87	85	2	223	27	15	30	26	1.96
69484523--69484711	87	2.2	87	82	3	220	26	16	30	25	1.97
69484746--69484786	2	20.5	2	100	0	82	48	0	0	51	1.00
69486894--69486975	32	2.6	30	83	11	85	41	3	4	50	1.41
69487399--69487434	2	18.0	2	100	0	72	50	0	0	50	1.00
69487501--69487537	17	2.2	17	100	0	74	64	10	18	5	1.43
69495990--69496074	44	1.9	44	85	4	118	28	12	21	37	1.90
69497078--69497108	12	2.6	12	94	0	53	16	29	25	29	1.96
69497301--69497331	15	2.1	15	100	0	62	6	25	41	25	1.79
69504363--69504388	2	13.0	2	100	0	52	50	0	0	50	1.00
69509136--69509232	50	1.9	50	97	0	185	35	12	20	31	1.90
69519134--69519197	27	2.3	26	76	10	65	28	25	21	25	1.99
69519348--69519412	27	2.4	27	79	2	69	41	21	20	16	1.90
69519548--69519747	27	7.4	27	82	3	199	27	22	17	33	1.96
69519549--69519747	54	3.7	54	81	1	238	27	22	16	33	1.95
69522313--69522469	43	3.6	45	72	19	138	22	17	26	33	1.96
69523442--69523481	21	1.9	21	94	0	71	25	22	42	10	1.84
69536406--69536458	20	2.5	22	81	6	65	26	20	16	35	1.94
69538282--69538306	2	12.5	2	100	0	50	52	0	0	48	1.00
69539786--69539859	30	2.5	29	77	12	87	24	27	10	37	1.88
69543224--69543345	38	3.0	39	80	14	140	36	16	27	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69543266--69543390	46	2.7	46	85	2	144	40	16	24	19	1.91
69549310--69549476	40	4.2	40	82	2	176	25	26	21	26	1.99
69555722--69555761	20	2.0	21	85	5	55	42	0	20	37	1.52
69563711--69563756	21	2.2	21	84	0	56	43	13	0	43	1.43
69565527--69565738	110	1.9	110	79	5	232	25	25	16	31	1.96
69565806--69565850	20	2.2	20	100	0	90	15	31	28	24	1.96
69575781--69575964	40	4.6	40	83	6	207	25	22	27	25	2.00
69575781--69575997	79	2.7	78	76	16	223	26	22	26	24	2.00
69583805--69583990	40	4.7	40	86	5	227	25	22	26	25	2.00
69583805--69584023	80	2.8	80	79	12	238	26	22	26	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438