genome.fa.s3.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  128  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37996286--37996362	40	1.9	40	86	0	109	32	15	23	28	1.95
37998938--37999679	126	5.9	126	87	2	940	29	17	16	35	1.93
37998938--37999679	253	3.0	249	85	3	961	29	17	16	35	1.93
37998938--37999679	379	2.0	376	85	2	1024	29	17	16	35	1.93
37999762--37999805	22	1.9	22	86	9	61	40	20	0	38	1.53
37999777--38000012	30	7.9	30	67	17	116	40	19	1	38	1.60
37999786--37999852	34	2.0	34	82	5	82	41	17	1	38	1.59
37999839--37999892	22	2.5	22	90	0	81	40	16	1	40	1.59
37999919--38000040	22	5.6	22	65	19	69	40	18	1	39	1.60
37999759--38000139	144	2.7	140	88	4	525	41	18	1	38	1.59
37999930--37999996	34	2.0	34	82	5	82	41	19	1	37	1.61
37999861--38000012	58	2.5	62	84	7	186	40	20	1	37	1.61
38000028--38000144	34	3.6	34	76	11	127	43	19	0	35	1.57
38000027--38000147	64	1.9	64	87	3	181	42	19	0	37	1.57
38000494--38000570	38	2.0	38	87	0	109	53	2	2	41	1.28
38013928--38014076	41	3.5	42	77	5	158	30	14	24	31	1.94
38023770--38023955	90	2.1	90	98	0	363	34	18	6	39	1.77
38025255--38025420	45	3.7	45	87	4	230	32	25	16	25	1.96
38025511--38025568	30	2.0	29	83	16	75	37	13	3	44	1.61
38026519--38026547	14	2.0	15	93	6	51	51	20	0	27	1.47
38030414--38030443	10	2.8	11	90	10	53	36	26	0	36	1.57
38031942--38032105	67	2.4	67	90	0	256	26	23	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38036687--38036946	43	6.1	43	89	1	362	30	33	15	21	1.94
38036687--38036946	85	3.0	85	90	2	396	30	33	15	21	1.94
38036688--38036937	128	2.0	128	91	1	412	30	33	14	21	1.94
38038550--38038641	27	3.4	27	89	0	130	27	23	8	40	1.84
38038633--38038739	27	4.0	27	82	0	106	39	20	12	28	1.88
38038739--38038845	27	3.9	27	77	16	103	42	18	7	31	1.78
38038898--38038961	27	2.4	27	82	7	78	35	20	23	20	1.96
38039771--38039839	25	2.8	25	91	2	104	27	26	21	24	1.99
38044859--38044893	18	1.9	18	94	0	61	60	2	31	5	1.35
38045131--38045173	20	2.2	20	83	8	52	55	0	6	37	1.27
38046161--38046350	40	4.8	40	79	5	204	25	23	22	28	1.99
38046397--38046488	40	2.3	40	76	12	98	21	21	21	34	1.97
38046977--38047021	22	2.0	22	95	0	81	37	13	20	28	1.90
38047276--38047380	29	3.4	29	72	10	84	33	15	25	25	1.95
38047275--38047449	61	2.9	61	79	6	194	34	16	23	26	1.95
38049039--38049065	2	13.5	2	100	0	54	48	0	0	51	1.00
38050914--38050981	26	2.9	22	80	16	91	39	14	20	25	1.91
38053413--38053452	20	2.0	21	85	5	55	42	0	20	37	1.52
38054114--38054335	46	4.7	45	80	12	182	27	18	29	23	1.98
38054208--38054335	49	2.6	48	90	4	195	25	20	30	23	1.98
38057617--38057812	63	3.1	62	83	7	245	30	29	16	23	1.96
38068546--38068578	11	2.8	12	81	9	50	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38075676--38075708	5	6.6	5	92	0	57	75	3	0	21	0.93
38080828--38080852	12	2.1	12	100	0	50	60	0	40	0	0.97
38082551--38082588	19	2.0	19	89	0	58	44	10	18	26	1.82
38085281--38085311	15	2.1	15	93	0	53	35	6	35	22	1.80
38089788--38090003	47	4.6	44	78	11	200	28	19	28	23	1.98
38089791--38090146	94	3.8	91	77	12	325	28	17	28	25	1.98
38089788--38090052	47	5.7	46	74	14	181	28	19	28	23	1.98
38089788--38090047	141	1.9	140	81	8	323	28	19	28	23	1.98
38095502--38095562	20	3.0	20	80	0	59	37	21	8	32	1.83
38099379--38099501	43	2.9	42	79	8	115	29	13	25	32	1.93
38101142--38101244	30	3.5	29	84	8	138	14	23	28	33	1.94
38101165--38101217	17	3.4	17	67	20	51	16	22	26	33	1.96
38101472--38101506	17	2.1	17	100	0	70	34	28	0	37	1.58
38102064--38102149	43	2.0	43	86	0	118	25	22	2	50	1.61
38103549--38103582	16	2.0	17	88	11	52	50	14	0	35	1.44
38104837--38104977	42	3.3	43	75	8	108	26	17	26	29	1.98
38110113--38110242	40	3.2	40	83	4	165	21	26	29	23	1.99
38121270--38121297	2	14.0	2	100	0	56	50	0	0	50	1.00
38122001--38122181	40	4.6	40	88	5	260	23	23	28	24	2.00
38132326--38132361	11	3.3	11	88	11	56	19	0	5	75	1.00
38133213--38133238	12	2.2	12	100	0	52	42	7	0	50	1.31
38144459--38144568	42	2.6	43	84	2	152	24	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144543--38144661	48	2.5	48	83	0	157	26	24	20	28	1.99
38144628--38144809	49	3.8	49	80	2	199	23	29	19	27	1.98
38148078--38148255	40	4.5	40	90	2	261	25	28	23	23	1.99
38157679--38157712	15	2.3	15	89	0	50	52	23	0	23	1.47
38164047--38164164	31	3.5	35	89	9	135	22	23	16	37	1.94
38164070--38164164	31	3.1	31	98	0	181	23	22	15	38	1.92
38164356--38164498	24	6.0	24	90	4	200	27	21	22	28	1.99
38164356--38164497	47	3.0	48	89	5	198	27	21	22	28	1.99
38164355--38164498	71	2.0	72	87	4	211	27	21	22	29	1.99
38164549--38164608	20	3.0	20	95	0	111	33	20	10	36	1.86
38164549--38164603	11	5.4	11	70	16	55	30	20	10	38	1.87
38164651--38164697	24	1.9	25	86	4	69	25	17	25	31	1.97
38169882--38170171	48	6.0	47	75	12	255	27	20	27	24	1.99
38169882--38170171	96	3.0	98	85	5	374	27	20	27	24	1.99
38178884--38178955	37	1.9	37	97	0	135	25	13	11	50	1.75
38183933--38183964	2	16.0	2	100	0	64	50	0	0	50	1.00
38191116--38191274	40	4.0	40	77	8	128	25	25	22	27	2.00
38191134--38191284	80	1.9	81	86	4	216	24	27	22	25	2.00
38213048--38213084	18	2.1	18	100	0	74	56	5	16	21	1.59
38214785--38214832	21	2.3	21	92	0	78	12	33	25	29	1.92
38220558--38220730	42	4.1	42	72	3	125	31	25	15	27	1.96
38220558--38220730	84	2.1	84	81	4	197	31	25	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38224963--38225138	88	2.0	88	98	0	343	27	19	15	36	1.93
38232522--38232719	39	5.0	39	86	1	243	25	21	29	23	1.99
38235140--38235335	27	7.3	27	88	5	254	29	23	8	39	1.83
38235140--38235335	80	2.4	81	86	3	288	29	23	8	39	1.83
38235140--38235333	107	1.8	107	91	0	325	28	23	8	39	1.83
38235151--38235424	27	10.2	27	79	3	95	32	23	8	35	1.85
38235140--38235335	54	3.6	54	88	1	286	29	23	8	39	1.83
38235205--38235370	81	2.1	80	80	1	179	31	24	7	36	1.84
38235328--38235478	54	2.8	54	93	0	257	39	21	7	31	1.82
38235328--38235479	27	5.6	27	85	0	214	39	21	7	31	1.82
38238925--38239175	27	9.3	27	85	6	312	28	23	8	39	1.84
38239168--38239314	27	5.7	27	75	11	164	38	21	7	32	1.82
38238925--38239174	54	4.6	54	91	0	401	28	23	8	39	1.84
38238925--38239175	81	3.1	81	85	4	371	28	23	8	39	1.84
38239179--38239276	47	2.0	48	92	3	162	35	22	8	33	1.84
38239226--38239328	54	1.9	54	82	4	127	35	19	11	33	1.88
38244140--38244313	87	2.0	87	96	2	323	28	19	16	36	1.93
38251697--38251893	39	5.0	39	85	0	232	25	20	28	24	1.99
38254952--38255083	40	3.3	38	81	6	138	29	25	21	23	1.99
38259507--38259657	40	3.8	40	77	13	134	27	23	26	22	2.00
38259543--38259673	40	3.3	40	79	2	156	25	23	27	23	2.00
38278439--38278612	42	4.0	42	71	6	132	29	21	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38283772--38284037	47	5.7	45	76	9	189	28	19	28	22	1.98
38283814--38284037	47	4.8	47	80	7	233	29	19	29	22	1.98
38283814--38284035	93	2.4	93	84	8	281	29	18	29	22	1.98
38286792--38286920	36	3.6	36	75	7	129	28	24	20	27	1.99
38293188--38293227	11	3.6	11	82	0	53	25	15	2	57	1.50
38293447--38293480	12	2.9	12	95	4	61	64	0	0	35	0.94
38296931--38296957	2	13.5	2	100	0	54	51	0	48	0	1.00
38297200--38297253	21	2.5	22	72	3	56	51	1	3	42	1.30
38297229--38297293	32	2.0	34	88	11	100	53	0	0	46	1.00
38301757--38301834	25	3.2	26	83	8	92	23	26	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438