genome.fa.s3.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr03 135709677 
Parameters: 2 7 7 80 10 50 1000
Length:  135709677

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   

This is table  139  of  438  ( 52554 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41506227--41506367	40	3.5	40	85	0	174	24	26	21	26	2.00
41506254--41506405	40	3.8	40	84	5	164	23	25	22	28	1.99
41514236--41514381	40	3.7	40	84	0	175	24	27	21	26	2.00
41514268--41514419	40	3.8	40	84	5	164	23	25	22	28	1.99
41516011--41516129	16	7.2	16	70	4	76	36	32	7	23	1.83
41516011--41516147	33	4.2	33	80	3	152	35	32	8	24	1.85
41516011--41516135	66	1.9	66	85	3	171	36	32	7	24	1.83
41518476--41518684	49	4.3	49	90	3	309	29	30	7	32	1.85
41520040--41520064	2	12.5	2	100	0	50	48	0	0	52	1.00
41522850--41522898	25	2.0	24	84	4	62	46	0	24	28	1.53
41522935--41522972	2	19.0	2	100	0	76	50	0	0	50	1.00
41525805--41525900	25	3.8	25	76	13	81	23	20	19	35	1.96
41529367--41529496	40	3.2	40	77	13	142	24	26	24	23	2.00
41529383--41529533	40	3.8	40	80	6	155	22	27	23	26	2.00
41529383--41529533	80	1.9	79	83	6	198	22	27	23	26	2.00
41536478--41536517	20	1.9	22	85	10	57	45	2	5	47	1.38
41536630--41536737	25	4.3	25	80	9	96	24	23	21	31	1.98
41536630--41536737	50	2.2	50	81	6	121	24	23	21	31	1.98
41540034--41540178	54	2.7	54	90	5	213	17	24	22	34	1.96
41540037--41540178	27	5.2	27	81	12	166	18	24	22	34	1.96
41540037--41540196	27	5.9	27	79	14	161	19	25	21	34	1.96
41540037--41540196	81	2.0	81	83	4	207	19	25	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41542842--41542873	15	2.0	17	88	11	50	25	0	31	43	1.55
41543787--41543896	56	2.0	56	87	0	157	22	25	27	24	2.00
41546732--41546766	9	3.7	9	85	14	52	65	25	0	8	1.21
41546735--41546769	11	3.4	11	92	7	56	62	25	0	11	1.28
41547876--41547928	25	2.1	25	100	0	106	22	18	3	54	1.59
41551211--41551275	32	2.0	32	96	0	121	38	23	10	27	1.88
41551989--41552038	19	2.9	17	83	16	59	72	0	2	26	0.96
41562236--41562264	13	2.1	14	93	6	51	20	10	13	55	1.68
41565450--41565531	43	2.0	40	90	9	130	45	4	7	42	1.53
41566365--41566399	16	2.2	16	89	0	52	37	40	8	14	1.76
41566458--41566517	30	2.0	30	90	0	93	31	26	5	36	1.78
41568758--41569099	170	2.0	172	87	2	501	32	23	14	29	1.94
41571004--41571211	40	5.2	40	82	2	202	24	26	22	25	2.00
41571000--41571211	80	2.7	80	80	2	230	25	26	22	26	2.00
41575220--41575301	6	14.2	6	87	5	82	78	0	1	20	0.83
41575223--41575300	5	14.8	5	85	14	88	78	0	1	20	0.83
41581943--41581980	16	2.4	16	90	0	67	55	23	13	7	1.64
41582196--41582273	29	2.7	29	86	2	113	30	11	26	30	1.92
41582196--41582285	29	3.1	28	82	7	110	30	11	27	31	1.91
41583601--41583731	46	2.9	44	82	7	138	25	31	16	27	1.96
41598543--41598578	3	12.0	3	100	0	72	33	0	0	66	0.92
41600808--41600846	20	2.0	20	90	5	62	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41600815--41600864	25	2.0	25	84	7	66	52	0	0	48	1.00
41603155--41603225	23	3.1	23	79	4	81	26	28	18	26	1.98
41608345--41608374	10	2.9	10	95	5	51	70	10	0	20	1.16
41608512--41608559	24	2.0	24	100	0	96	37	20	8	33	1.83
41609462--41609502	12	3.3	12	80	6	55	56	0	0	43	0.99
41609466--41609515	25	2.0	26	92	4	84	56	2	0	42	1.11
41611016--41611230	46	4.6	48	77	14	195	27	19	29	23	1.98
41610968--41611227	94	2.8	93	79	13	252	29	19	27	23	1.98
41610967--41611227	140	1.9	139	82	9	334	29	19	27	23	1.98
41612302--41612340	21	1.9	21	89	5	62	12	33	28	25	1.93
41618652--41618815	46	3.5	44	79	9	175	28	16	29	25	1.97
41619870--41619912	21	2.0	21	95	0	77	18	32	18	30	1.95
41625764--41625830	28	2.4	28	82	5	82	28	13	29	28	1.94
41626130--41626415	27	10.6	27	82	5	296	37	18	12	31	1.89
41626138--41626389	81	3.1	79	85	5	326	37	19	12	30	1.89
41626341--41626431	27	3.4	27	87	0	110	38	15	16	29	1.89
41628020--41628186	50	3.5	48	78	11	141	26	16	29	26	1.97
41627919--41628243	138	2.3	140	79	7	327	28	17	28	25	1.97
41629485--41631045	543	2.9	543	95	0	2822	36	7	19	36	1.80
41633016--41633098	41	2.0	41	100	0	166	28	21	14	34	1.93
41633151--41633237	37	2.3	36	94	5	147	26	33	19	20	1.97
41633306--41633507	49	4.1	49	98	0	377	30	28	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41637765--41637886	43	2.9	42	78	11	140	27	22	17	31	1.96
41643943--41644019	38	2.0	38	97	0	145	42	12	9	35	1.75
41645779--41645929	40	3.8	40	75	15	134	27	23	26	23	2.00
41645815--41645945	40	3.3	40	79	6	158	25	22	27	24	2.00
41647990--41648090	39	2.5	40	85	1	132	30	22	24	21	1.99
41647990--41648172	40	4.6	40	82	3	181	27	22	26	23	1.99
41651837--41652147	46	6.6	46	71	15	167	28	20	27	22	1.99
41651837--41652048	46	4.5	48	80	7	195	30	20	27	21	1.98
41651979--41652240	142	1.8	145	81	7	329	27	20	26	25	1.99
41652066--41652198	49	2.7	48	82	5	151	28	21	27	22	1.99
41656190--41656324	29	4.7	29	86	3	155	23	31	15	29	1.95
41656136--41656325	58	3.3	58	77	4	179	24	33	16	26	1.96
41664305--41664359	28	1.9	29	85	3	76	23	25	16	34	1.95
41675181--41675443	48	5.6	48	80	3	257	29	18	28	24	1.98
41675464--41675635	49	3.5	48	76	7	161	26	21	29	23	1.99
41675186--41675635	142	3.2	145	76	11	364	27	19	28	24	1.99
41686145--41686737	49	11.9	49	86	7	775	35	9	27	28	1.87
41686144--41686737	96	6.0	95	84	10	744	35	9	27	28	1.87
41686150--41686737	145	3.9	144	89	5	811	35	9	27	28	1.87
41686580--41686614	18	1.9	18	94	0	61	37	8	22	31	1.85
41686532--41686661	65	2.0	65	100	0	260	36	9	26	27	1.87
41686484--41686710	114	2.0	113	92	3	375	35	8	27	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41686436--41686737	161	1.9	161	95	0	541	35	8	27	28	1.86
41686597--41686737	47	2.9	48	88	3	212	34	7	28	29	1.85
41686696--41686879	48	3.5	55	79	16	189	32	5	28	32	1.81
41686729--41686880	48	3.2	48	97	0	277	34	5	28	32	1.79
41686920--41687010	37	2.4	37	96	1	164	23	18	32	25	1.97
41688616--41688811	55	3.6	54	78	6	182	19	24	19	35	1.95
41688616--41688822	53	3.8	53	78	4	218	19	24	19	36	1.95
41688935--41688961	2	13.5	2	100	0	54	51	0	0	48	1.00
41697043--41697809	48	16.0	48	93	0	1250	35	6	28	30	1.81
41697854--41697961	37	2.9	37	95	0	198	23	19	33	24	1.97
41700719--41700922	40	5.1	40	88	3	277	22	20	29	27	1.99
41703680--41703865	40	4.7	40	87	4	234	25	26	22	25	2.00
41710689--41710870	40	4.6	40	79	8	176	24	24	28	23	2.00
41710689--41710870	78	2.3	80	82	6	210	24	24	28	23	2.00
41715069--41715254	40	4.7	40	85	5	218	25	26	22	25	2.00
41718060--41718160	28	3.5	28	86	6	114	29	13	26	29	1.94
41726013--41726113	28	3.5	28	86	6	114	29	13	26	29	1.94
41728381--41728612	40	5.8	40	95	0	392	25	19	28	26	1.99
41732240--41733005	48	16.0	48	95	0	1302	34	6	28	30	1.82
41733050--41733157	37	2.9	37	91	0	180	24	18	33	24	1.97
41741024--41741077	23	2.3	23	93	0	90	12	24	35	27	1.92
41745620--41745694	38	2.0	38	97	0	141	21	9	29	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41754720--41754762	21	2.0	21	95	0	77	44	9	4	41	1.57
41759271--41759315	22	2.0	22	100	0	90	55	13	13	17	1.69
41760201--41760241	22	2.0	20	85	9	55	24	4	14	56	1.58
41760871--41760944	29	2.6	29	95	0	130	18	21	28	31	1.97
41767961--41767995	8	4.4	8	96	0	61	54	20	22	2	1.58
41768337--41768542	27	7.7	27	82	5	172	41	17	8	31	1.80
41768337--41768568	81	2.9	79	82	7	252	41	18	9	30	1.82
41768337--41768530	54	3.6	54	83	3	196	41	17	8	31	1.80
41768386--41768574	27	7.0	27	79	8	163	40	17	11	30	1.86
41768968--41769056	27	3.3	27	75	6	90	23	19	16	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438