genome.fa.s6.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  101  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30893727--30893782	19	2.9	21	82	10	57	64	1	0	33	1.04
30894183--30894229	24	2.0	24	83	8	60	38	0	0	61	0.96
30894196--30894232	17	2.1	18	90	10	58	40	0	0	59	0.97
30894662--30894703	18	2.3	18	87	0	57	59	2	21	16	1.48
30895139--30895189	21	2.5	20	87	6	75	35	1	11	50	1.50
30895713--30895761	13	3.7	13	78	10	55	53	6	0	40	1.26
30897760--30897819	17	3.5	17	84	8	68	30	15	0	55	1.41
30899906--30899939	16	2.1	16	88	0	50	47	2	0	50	1.16
30900036--30900073	19	2.0	19	89	0	58	57	0	0	42	0.98
30900372--30900411	20	2.0	21	90	5	64	62	5	5	27	1.37
30900500--30900581	30	2.7	29	77	18	87	52	3	0	43	1.18
30900511--30900586	30	2.4	30	85	12	91	50	3	0	46	1.20
30902939--30902983	22	2.0	23	82	4	56	42	20	2	35	1.64
30903860--30903926	35	1.9	35	84	0	89	40	32	20	5	1.77
30908583--30908800	79	2.7	81	78	8	225	25	27	22	24	2.00
30908609--30908800	40	4.8	39	77	8	181	24	28	22	24	2.00
30911324--30911355	3	10.7	3	100	0	64	34	0	65	0	0.93
30917630--30917813	40	4.6	40	84	5	194	25	23	26	24	2.00
30917630--30917813	80	2.3	80	84	7	221	25	23	26	24	2.00
30925678--30925818	40	3.5	40	86	2	196	24	24	25	25	2.00
30937539--30937587	17	2.8	18	74	22	50	24	18	22	34	1.96
30938410--30938576	40	4.2	40	79	6	169	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30945536--30945584	17	2.8	18	74	22	50	24	18	22	34	1.96
30946406--30946572	40	4.2	40	79	6	169	25	21	27	25	1.99
30956978--30957037	30	2.0	30	90	0	93	38	8	25	28	1.84
30958971--30959050	40	2.0	40	92	0	133	25	20	22	32	1.98
30964988--30965012	12	2.1	12	100	0	50	24	8	28	40	1.83
30967373--30967467	29	3.3	29	77	10	97	31	12	29	26	1.93
30973593--30973627	15	2.3	15	100	0	70	25	8	17	48	1.75
30975249--30975437	50	3.8	49	80	2	180	29	26	16	26	1.97
30996813--30996967	39	3.9	40	88	0	206	22	21	31	24	1.98
30996813--30996967	79	2.0	79	87	2	222	22	21	31	24	1.98
30996823--30997005	79	2.3	78	81	6	199	24	21	30	24	1.99
31002871--31003032	58	2.8	59	85	3	195	26	16	32	25	1.96
31002871--31002972	29	3.5	29	94	0	186	29	14	29	26	1.95
31007466--31007519	28	1.9	28	81	7	65	37	12	16	33	1.87
31007796--31007862	34	2.0	33	85	8	91	31	22	23	22	1.98
31014288--31014339	25	2.1	24	82	7	59	9	30	11	48	1.72
31023109--31023134	5	5.2	5	100	0	52	42	0	0	57	0.98
31027075--31027147	35	2.1	35	100	0	146	39	19	5	35	1.75
31027750--31027795	21	2.2	22	84	7	60	71	2	17	8	1.21
31028022--31028046	7	3.6	7	100	0	50	12	0	28	60	1.32
31028886--31028985	27	3.5	28	84	5	112	26	13	27	34	1.93
31030016--31030064	17	2.8	18	74	22	50	24	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31030886--31031036	40	3.8	40	79	6	155	26	23	27	23	2.00
31030922--31031052	40	3.3	40	79	4	149	24	22	26	25	2.00
31040588--31040752	72	2.3	71	97	2	321	18	28	17	35	1.94
31057089--31057268	40	4.5	40	90	2	274	26	25	22	25	2.00
31059778--31059809	9	3.6	9	100	0	64	68	0	21	9	1.17
31070399--31070544	37	3.9	37	97	0	256	26	31	19	23	1.98
31070589--31070974	48	8.0	48	94	0	664	31	26	6	34	1.83
31079120--31079197	29	2.7	29	83	0	102	21	33	17	26	1.96
31086971--31087048	29	2.7	29	83	0	102	21	33	17	26	1.96
31090063--31090229	52	3.2	52	79	10	187	34	26	13	25	1.93
31097420--31097546	53	2.5	51	78	13	122	30	28	15	25	1.96
31097448--31097614	52	3.2	52	75	10	160	34	25	13	26	1.93
31115256--31115322	31	2.2	31	83	5	82	56	1	4	37	1.29
31119165--31119210	22	2.4	19	75	25	51	45	4	15	34	1.66
31126611--31126643	16	2.0	17	88	5	50	33	3	24	39	1.71
31129866--31129973	26	4.2	26	91	0	180	31	7	25	36	1.83
31136902--31137009	26	4.2	26	93	0	189	32	7	24	36	1.83
31143732--31143898	40	4.2	41	78	5	155	25	26	22	26	2.00
31144724--31144769	17	2.5	19	74	22	53	34	23	17	23	1.96
31152023--31152175	77	2.0	77	97	0	288	24	35	15	24	1.94
31156363--31156388	5	5.2	5	100	0	52	42	19	19	19	1.90
31157412--31157448	9	4.1	9	85	0	56	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31174602--31174676	38	2.0	38	97	0	141	18	25	32	24	1.97
31174609--31174689	38	2.1	38	84	4	101	22	27	29	20	1.99
31180854--31181114	47	5.6	46	70	12	149	29	18	28	23	1.98
31189399--31189428	1	30.0	1	100	0	60	0	0	0	100	0.00
31191528--31191631	18	5.8	18	69	16	63	34	4	0	59	1.25
31191556--31191674	48	2.6	44	77	12	123	36	3	0	59	1.20
31197165--31197226	32	1.9	32	96	0	115	35	11	3	50	1.55
31201457--31201660	53	3.8	54	80	5	207	23	24	17	34	1.95
31201642--31201763	47	2.6	47	93	0	208	25	24	13	36	1.93
31202501--31202557	29	1.9	29	85	3	78	35	19	5	40	1.74
31206104--31206307	40	5.1	40	86	5	245	26	26	21	25	1.99
31206123--31206307	79	2.3	81	85	6	245	27	27	21	24	1.99
31209157--31209344	40	4.6	41	81	7	161	23	27	22	27	1.99
31210164--31210209	17	2.5	19	74	22	53	34	23	17	23	1.96
31217221--31217369	80	1.9	80	81	2	183	22	30	24	22	1.99
31217262--31217369	40	2.7	38	85	8	128	21	29	25	23	1.99
31219086--31219126	18	2.3	18	86	0	55	19	17	9	53	1.70
31221711--31221776	28	2.4	27	83	14	82	69	0	24	6	1.10
31225813--31226037	40	5.7	41	85	4	270	25	25	20	27	1.99
31225841--31226037	80	2.5	80	88	5	301	25	25	20	28	1.99
31233876--31234050	38	4.6	38	88	8	234	24	26	21	28	1.99
31233874--31234048	77	2.3	75	87	8	257	24	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31239754--31240053	47	6.3	47	93	1	456	29	30	7	32	1.85
31239804--31239882	25	3.3	25	66	16	76	31	29	5	34	1.79
31247722--31247793	29	2.5	29	91	6	112	29	27	13	29	1.95
31247721--31247821	28	3.5	28	81	8	89	28	28	13	28	1.95
31253863--31253979	2	58.5	2	100	0	234	0	49	0	50	1.00
31253979--31254007	2	14.5	2	100	0	58	48	0	0	51	1.00
31255167--31255231	32	2.0	32	96	0	121	21	7	10	60	1.55
31268510--31268549	21	1.9	21	89	0	62	35	0	25	40	1.56
31268995--31269067	26	2.8	26	76	15	71	17	21	24	35	1.95
31269112--31269238	49	2.6	50	78	10	138	22	23	19	33	1.97
31274751--31275110	47	7.7	47	70	16	205	30	20	28	20	1.98
31274757--31275059	91	3.3	91	75	11	335	30	19	29	21	1.98
31274749--31275110	187	1.9	187	92	1	609	29	20	29	20	1.98
31282429--31282616	40	4.7	40	90	1	270	25	28	22	23	1.99
31282409--31282620	80	2.7	79	88	3	318	26	27	21	24	1.99
31284802--31284826	12	2.1	12	100	0	50	16	8	16	60	1.58
31285540--31285755	47	4.6	48	72	16	143	31	19	27	21	1.98
31285549--31285915	198	1.9	198	89	0	581	29	19	27	23	1.98
31287283--31287353	16	4.4	16	80	0	88	33	7	29	29	1.84
31287501--31287550	26	2.0	26	88	4	75	42	0	6	52	1.26
31287526--31287649	59	2.1	57	83	4	149	51	4	0	43	1.26
31287600--31287674	12	6.8	11	70	22	52	52	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31287612--31287674	12	5.4	12	73	21	55	49	3	0	47	1.17
31293807--31293957	40	3.8	39	78	8	126	21	26	24	27	2.00
31293807--31293956	80	1.9	80	83	5	196	21	26	24	27	1.99
31301981--31302013	16	2.0	17	94	5	59	0	27	0	72	0.85
31302076--31302141	21	3.1	21	82	6	71	39	4	0	56	1.20
31303808--31304005	53	3.7	54	76	5	188	20	22	19	37	1.94
31304109--31304149	20	2.0	20	100	0	82	65	4	0	29	1.13
31323548--31323727	40	4.5	40	76	8	161	23	25	24	26	2.00
31323548--31323725	80	2.2	80	82	4	216	23	25	24	26	2.00
31325765--31325867	29	3.6	28	81	5	116	21	16	33	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433