Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  399  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123957854--123957915
31
2.0
31
87
0
88
61
9
3
25
1.42
123969731--123970004
46
6.0
46
89
0
388
22
21
14
41
1.89
123972109--123972142
11
3.2
11
87
8
52
76
0
0
23
0.79
123972109--123972142
10
3.2
10
88
12
50
76
0
0
23
0.79
123972368--123972426
30
1.9
31
86
3
84
30
18
1
49
1.58
123981504--123981545
12
3.7
11
78
15
50
0
14
4
80
0.86
123985619--123985699
41
2.0
41
97
0
153
48
1
17
33
1.55
123989400--123989435
14
2.5
15
95
4
65
41
19
0
38
1.52
123989897--123989979
41
2.0
41
100
0
166
46
2
16
33
1.60
123991231--123991283
26
2.0
26
82
7
63
26
15
20
37
1.92
123992771--123992900
26
5.0
26
95
0
224
35
23
7
33
1.84
123992771--123992970
52
4.0
52
78
15
240
35
22
8
34
1.84
123992918--123992970
26
2.0
26
92
0
88
35
22
7
33
1.83
123992771--123992991
70
3.1
69
87
8
275
35
21
9
34
1.85
123994265--123994320
27
1.9
27
82
13
67
57
3
0
39
1.16
123997693--123997771
41
1.9
41
92
0
131
44
3
16
35
1.66
124001288--124001339
19
2.8
20
82
8
65
38
3
0
57
1.17
124001491--124001533
20
2.2
19
88
12
61
39
0
2
58
1.11
124001714--124001738
7
3.6
7
100
0
50
44
0
0
56
0.99
124001935--124001993
30
2.0
30
89
0
91
30
8
3
57
1.45
124005495--124005539
15
3.1
15
79
17
51
22
24
13
40
1.90
124013481--124014062
116
4.9
117
94
3
942
32
17
19
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124015827--124015879
20
2.8
20
83
11
67
37
3
0
58
1.16
124023843--124024040
83
2.4
83
85
4
256
32
21
18
27
1.97
124026959--124027018
23
2.8
20
80
16
66
31
6
3
58
1.40
124026960--124027021
21
2.8
22
81
16
74
32
6
3
58
1.40
124027047--124027088
18
2.3
19
87
4
59
30
2
0
66
1.04
124028787--124028842
27
2.1
27
96
0
103
28
8
26
35
1.87
124030900--124030955
28
2.0
29
82
10
71
41
3
3
51
1.36
124040176--124040230
27
2.0
27
96
0
101
36
18
16
29
1.92
124044720--124044750
15
2.1
15
100
0
62
19
19
6
54
1.65
124050056--124050105
25
2.0
25
85
11
68
22
8
10
60
1.55
124050065--124050122
25
2.4
24
81
13
66
22
10
8
58
1.58
124054264--124054314
19
2.9
16
76
23
50
31
0
3
64
1.11
124057596--124057705
53
2.1
53
98
0
211
38
7
10
44
1.66
124057717--124057768
23
2.4
22
84
12
63
48
3
0
48
1.20
124057703--124057768
24
2.8
23
79
4
78
48
4
0
46
1.22
124062834--124062918
10
8.4
10
69
21
61
52
1
0
45
1.08
124062905--124062961
30
1.9
30
85
7
80
38
1
0
59
1.08
124065761--124065786
2
13.0
2
100
0
52
50
0
0
50
1.00
124066337--124066370
16
2.2
16
89
5
52
70
0
0
29
0.87
124066888--124066917
2
15.5
2
93
6
53
50
0
0
50
1.00
124066996--124067045
15
3.1
16
85
5
66
48
0
0
52
1.00
124067006--124067057
17
3.2
16
86
10
70
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124067504--124067556
16
3.3
15
75
15
52
43
11
1
43
1.51
124067486--124067556
33
2.2
33
92
0
115
39
12
2
45
1.57
124067487--124067545
17
3.5
17
77
13
68
38
13
3
44
1.61
124072255--124072297
21
2.0
21
100
0
86
18
0
37
44
1.50
124075291--124075325
17
2.0
18
88
5
54
31
2
0
65
1.07
124075432--124075676
97
2.5
94
85
8
316
35
10
20
33
1.87
124086804--124086899
47
2.0
47
84
4
122
29
16
12
41
1.85
124090783--124090840
28
2.1
28
100
0
116
55
10
3
31
1.50
124092054--124092114
9
6.8
9
88
0
77
42
18
9
29
1.82
124096422--124096457
18
2.0
18
94
0
63
22
13
16
47
1.82
124106120--124106165
3
15.3
3
100
0
92
67
0
0
32
0.91
124106365--124106409
5
9.0
5
80
0
54
73
2
2
22
1.05
124106454--124106493
2
20.0
2
100
0
80
50
0
0
50
1.00
124106637--124106672
2
18.0
2
100
0
72
50
0
0
50
1.00
124108429--124108639
45
4.7
45
72
5
169
28
26
18
27
1.98
124108428--124108777
45
7.9
44
68
8
163
28
24
18
28
1.98
124108348--124108774
133
3.2
133
86
1
597
28
24
18
28
1.98
124108800--124108893
48
2.0
48
91
0
152
40
14
13
30
1.86
124120202--124120243
3
13.7
3
95
5
75
66
0
0
33
0.92
124120443--124120487
5
9.0
5
85
0
54
75
4
2
17
1.07
124122344--124122396
23
2.3
23
80
0
61
22
18
18
39
1.92
124124040--124124224
68
2.7
68
84
2
221
25
21
15
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124127953--124127986
14
2.4
14
100
0
68
29
55
8
5
1.54
124128554--124128596
23
1.9
23
85
4
61
0
44
0
55
0.99
124129027--124129087
3
20.0
3
86
3
86
31
1
4
62
1.26
124129270--124129328
29
2.1
29
82
14
72
25
10
1
62
1.36
124129292--124129342
21
2.3
22
83
12
61
25
11
1
60
1.41
124141908--124142237
70
4.5
71
76
13
303
30
17
21
30
1.96
124141907--124142237
150
2.3
145
89
5
506
30
17
22
30
1.96
124141908--124142261
74
4.8
74
74
13
257
30
17
22
30
1.96
124143379--124143412
14
2.4
14
100
0
68
29
55
8
5
1.54
124143977--124144019
23
1.9
23
85
4
61
0
44
0
55
0.99
124144451--124144508
3
19.0
3
85
3
80
31
1
5
62
1.27
124144692--124144750
29
2.1
29
82
14
72
25
10
1
62
1.36
124144714--124144764
21
2.3
22
83
12
61
25
11
1
60
1.41
124146774--124146914
27
5.2
27
79
11
164
17
21
23
36
1.94
124146774--124146914
54
2.6
54
90
5
214
17
21
23
36
1.94
124148795--124148866
31
2.3
31
80
2
81
36
9
9
44
1.70
124151521--124151566
19
2.3
20
82
10
60
50
23
10
15
1.75
124153694--124153741
20
2.4
21
75
10
55
37
25
31
6
1.81
124156528--124156569
22
1.9
22
85
0
57
64
0
7
28
1.20
124162774--124162824
25
2.0
25
85
7
68
74
1
17
5
1.11
124162783--124162832
18
2.9
18
82
8
68
76
0
20
4
0.95
124164905--124165344
244
1.8
244
84
3
607
40
13
14
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124165905--124165961
30
1.9
30
96
0
105
28
40
22
8
1.84
124170736--124170795
30
2.0
30
90
0
93
26
1
13
58
1.45
124171399--124171438
20
2.0
20
100
0
80
65
10
5
20
1.42
124171481--124171550
35
2.0
35
91
0
113
50
11
4
34
1.58
124171486--124171549
18
3.6
18
71
12
60
51
12
4
31
1.60
124173185--124173253
28
2.5
28
80
4
77
52
15
10
21
1.73
124173204--124173266
28
2.2
28
91
0
99
50
15
9
23
1.73
124173854--124174013
63
2.5
63
83
8
191
28
24
21
26
1.99
124176515--124176559
22
2.0
22
82
0
54
35
20
8
35
1.84
124178686--124178774
24
3.8
24
89
3
135
24
31
16
26
1.97
124178735--124178795
24
2.5
24
89
0
86
29
29
18
22
1.97
124178686--124178795
48
2.3
47
84
1
130
25
30
17
26
1.97
124182447--124182553
43
2.4
43
85
4
133
29
23
14
32
1.94
124184078--124184125
14
3.5
14
83
8
55
79
6
4
10
1.05
124186369--124186416
20
2.3
21
85
7
71
58
8
14
18
1.61
124187049--124187077
11
2.6
11
100
0
58
27
27
6
37
1.82
124189757--124189801
21
2.1
21
87
0
63
8
17
48
24
1.75
124190865--124190928
27
2.4
26
84
7
83
40
9
9
40
1.70
124196031--124196086
29
1.9
29
96
0
103
39
12
17
30
1.87
124202164--124202204
18
2.3
18
100
0
82
46
17
9
26
1.79
124203386--124203436
18
3.0
17
81
13
61
23
0
35
41
1.55
124204339--124204392
28
1.9
28
100
0
108
31
38
11
18
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124204843--124204889
23
2.0
23
91
0
76
21
8
36
34
1.84
124207828--124207862
2
17.5
2
93
0
61
54
0
0
45
0.99
124208017--124208079
28
2.2
28
80
5
74
61
0
6
31
1.21
124209731--124209791
16
3.5
16
71
18
50
59
1
1
37
1.17
124212605--124212630
3
8.7
3
100
0
52
65
0
0
34
0.93
124212700--124212748
18
2.5
21
81
18
61
59
4
4
32
1.35
124212711--124212762
21
2.6
21
82
11
56
55
7
3
32
1.46
124212822--124212893
37
2.0
37
83
8
94
52
1
5
40
1.33
124212938--124212982
11
4.1
11
82
0
54
60
4
0
35
1.17
124214610--124214644
14
2.6
13
86
8
52
48
8
14
28
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433