Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  40  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10460594--10460625
6
5.3
6
100
0
64
46
15
18
18
1.84
10473495--10473526
17
1.9
16
93
6
55
43
0
3
53
1.16
10478299--10478368
33
2.2
31
84
5
95
57
12
5
24
1.57
10478301--10478359
21
2.7
23
80
12
63
54
13
6
25
1.64
10478301--10478347
22
2.2
22
84
3
60
57
12
6
23
1.58
10482702--10482877
46
3.8
46
79
12
216
20
21
29
28
1.98
10482699--10482870
93
1.8
93
96
0
317
20
21
29
27
1.98
10492192--10492292
29
3.5
29
90
1
150
23
33
15
26
1.95
10500030--10500131
29
3.5
29
90
0
150
23
33
15
27
1.95
10503199--10503255
28
2.0
28
100
0
114
54
7
17
21
1.66
10509553--10509586
17
2.0
17
94
0
59
17
14
11
55
1.68
10516299--10516331
5
6.8
5
93
6
59
18
0
0
81
0.68
10516300--10516330
14
2.2
14
100
0
62
19
0
0
80
0.71
10518907--10519022
43
2.7
43
82
1
135
31
28
17
23
1.97
10518961--10519064
43
2.5
42
85
1
127
35
25
14
24
1.93
10529901--10529967
20
3.3
20
89
4
100
34
19
11
34
1.88
10536548--10536596
17
2.8
18
74
22
50
24
18
22
34
1.96
10537418--10537584
40
4.2
40
79
6
169
25
21
27
25
1.99
10544548--10544596
17
2.8
18
74
22
50
24
18
22
34
1.96
10545418--10545584
40
4.2
40
79
6
169
25
21
27
25
1.99
10557976--10558013
19
2.0
19
94
0
67
52
7
31
7
1.59
10564174--10564218
17
2.6
17
96
0
81
26
6
15
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10573193--10573365
27
6.4
27
83
0
211
36
17
19
26
1.94
10580643--10580685
22
1.9
23
85
4
61
37
16
37
9
1.81
10594001--10594050
22
2.3
22
86
3
66
18
38
32
12
1.87
10598637--10598729
46
2.0
46
91
0
150
19
37
9
33
1.84
10603066--10603149
41
2.0
41
97
0
150
33
13
17
35
1.89
10607678--10607715
2
19.0
2
88
0
58
55
0
44
0
0.99
10608888--10608912
10
2.5
10
100
0
50
44
0
0
56
0.99
10610558--10610596
12
3.2
12
77
0
51
35
33
10
20
1.86
10612720--10612758
18
2.2
18
90
9
62
12
35
5
46
1.65
10615360--10615405
22
2.1
22
92
4
76
47
0
0
52
1.00
10616555--10616586
9
3.4
10
87
12
50
34
0
0
65
0.93
10616535--10616601
19
3.5
19
73
15
59
37
0
0
62
0.95
10616707--10616746
21
1.9
21
84
0
53
67
0
7
25
1.16
10617342--10617385
21
2.1
21
82
0
52
34
25
2
38
1.68
10619956--10620181
40
5.7
40
86
4
237
27
22
25
25
2.00
10621694--10621719
6
4.3
6
100
0
52
19
46
19
15
1.85
10626749--10626818
27
2.5
28
93
2
115
30
28
14
27
1.95
10631167--10631352
40
4.7
40
86
5
227
25
22
26
25
2.00
10637083--10637835
126
6.0
126
88
2
1041
29
16
16
37
1.91
10637113--10637835
253
2.9
251
88
2
1058
29
16
16
38
1.90
10637083--10637836
379
2.0
378
89
2
1147
29
16
16
37
1.91
10638008--10638072
17
3.9
17
71
15
64
46
18
0
35
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10638013--10638072
32
1.9
32
93
3
104
48
20
0
31
1.50
10638048--10638094
22
2.1
23
96
4
87
42
19
0
38
1.51
10638063--10638138
35
2.3
34
79
18
90
43
21
0
35
1.53
10638072--10638141
35
2.0
35
89
8
108
41
18
0
40
1.51
10638075--10638157
34
2.4
35
82
11
100
44
14
0
40
1.45
10638075--10638177
36
2.9
34
80
15
95
43
15
0
40
1.47
10644652--10644731
40
2.0
40
100
0
160
30
7
7
55
1.56
10644656--10644720
21
3.2
21
66
16
64
30
7
6
55
1.53
10644657--10644722
22
3.2
22
65
30
63
30
7
6
56
1.52
10644754--10644792
19
2.0
20
85
9
55
43
0
2
53
1.14
10645008--10645062
28
2.0
28
100
0
110
50
1
14
32
1.53
10666667--10666728
31
2.0
31
100
0
124
22
19
25
32
1.97
10668271--10668340
25
2.8
25
95
0
131
25
24
18
31
1.98
10669473--10669502
16
1.9
16
93
6
53
30
0
20
50
1.49
10672077--10672107
2
15.5
2
100
0
62
51
0
0
48
1.00
10672912--10673016
18
5.9
18
72
2
95
34
8
17
40
1.80
10673813--10673880
34
2.0
34
97
0
127
42
8
25
23
1.82
10674521--10675186
332
2.0
332
100
0
1332
33
13
21
31
1.92
10675730--10675788
26
2.3
26
87
0
82
42
10
13
33
1.78
10675730--10675802
26
2.8
26
83
4
76
42
8
16
32
1.78
10686753--10686783
15
2.0
16
93
6
55
38
0
0
61
0.96
10688439--10688476
2
20.0
2
89
10
62
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10688439--10688477
17
2.3
17
100
0
78
53
0
0
46
1.00
10688445--10688474
15
2.0
15
100
0
60
53
0
0
46
1.00
10689107--10689154
2
24.5
2
95
4
89
50
0
0
50
1.00
10689908--10689978
26
2.9
25
77
6
74
54
1
2
40
1.23
10690353--10690419
31
2.2
31
97
2
127
50
7
0
41
1.30
10698351--10698436
41
2.1
40
82
2
100
22
2
9
66
1.32
10702504--10702535
2
16.0
2
100
0
64
50
0
0
50
1.00
10706310--10706451
43
3.3
43
76
5
146
32
23
14
30
1.94
10706589--10706654
35
1.9
34
81
9
80
53
3
3
40
1.32
10706694--10706756
12
5.1
12
75
5
54
69
3
1
25
1.12
10708486--10708510
2
12.5
2
100
0
50
48
0
0
52
1.00
10712368--10712431
27
2.3
27
78
17
69
64
0
4
31
1.14
10717866--10718042
40
4.4
40
83
4
225
27
27
22
23
1.99
10726018--10726194
40
4.4
40
83
4
225
26
27
22
23
1.99
10728688--10728726
21
1.9
20
84
5
51
33
5
7
53
1.51
10733691--10733732
22
1.9
22
95
0
75
80
4
9
4
0.99
10745262--10745288
11
2.5
11
100
0
54
7
7
0
85
0.75
10758120--10758177
19
3.1
19
75
9
55
22
6
15
55
1.64
10768812--10768849
16
2.4
16
87
12
60
15
5
0
78
0.91
10768812--10768868
17
3.3
18
83
16
68
17
7
0
75
1.02
10780239--10780301
30
2.1
30
84
0
81
52
12
6
28
1.64
10780285--10780322
19
2.0
20
85
15
53
55
5
5
34
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10780331--10780373
22
2.0
22
85
0
59
55
9
13
20
1.66
10780338--10780386
22
2.2
22
82
7
55
57
6
18
18
1.61
10782150--10782199
20
2.5
20
93
6
84
18
26
36
20
1.95
10784261--10784328
29
2.3
29
92
0
109
35
13
29
22
1.92
10784314--10784474
30
5.4
29
73
15
107
38
13
25
22
1.91
10784290--10784507
89
2.4
90
76
8
230
37
13
26
22
1.92
10784462--10784538
30
2.5
30
82
2
91
40
9
22
28
1.84
10784317--10784540
119
1.9
120
83
6
294
37
12
25
24
1.90
10786592--10786626
18
1.9
18
100
0
70
17
22
2
57
1.53
10789667--10789700
6
5.5
6
93
6
59
0
17
0
82
0.67
10797023--10797083
20
3.0
20
69
21
54
21
6
21
50
1.70
10797016--10797095
41
2.0
41
89
0
124
20
7
21
51
1.71
10800369--10800871
251
2.0
251
98
0
979
33
9
13
43
1.77
10806731--10806771
22
1.9
22
90
5
66
19
29
41
9
1.83
10807989--10808164
46
3.8
45
80
8
194
24
30
18
27
1.98
10807991--10808164
94
1.9
92
84
7
235
24
29
17
27
1.98
10815043--10815310
47
5.7
46
71
15
156
26
29
17
26
1.97
10820131--10820287
29
5.4
29
91
1
251
33
10
29
25
1.90
10820131--10820287
59
2.7
59
90
1
262
33
10
29
25
1.90
10820280--10820502
32
6.9
32
88
4
252
31
9
22
35
1.87
10820336--10820552
64
3.4
64
82
4
159
35
11
21
31
1.89
10846228--10846253
4
6.5
4
100
0
52
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10846316--10846340
6
4.2
6
100
0
50
16
0
0
84
0.63
10846678--10846715
16
2.2
18
86
9
53
65
7
0
26
1.19
10847524--10847598
38
2.0
38
94
0
132
28
14
18
38
1.90
10852355--10852413
21
2.8
21
74
10
57
42
3
0
54
1.17
10854387--10856695
580
4.0
575
88
2
3434
35
21
13
29
1.91
10865578--10865741
81
2.0
81
100
0
328
34
29
9
26
1.88
10889512--10889675
42
3.7
42
84
8
186
29
27
13
29
1.94
10889582--10889768
49
3.8
49
81
11
206
32
26
12
28
1.93
10889582--10889768
98
1.9
97
84
8
247
32
26
12
28
1.93
10889790--10889907
31
3.8
31
93
0
191
25
29
20
24
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433