genome.fa.s6.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  339  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106035714--106035927	24	9.0	23	88	4	286	28	21	21	28	1.99
106035713--106035926	47	4.5	47	93	2	331	28	21	21	28	1.99
106039545--106039689	41	3.4	42	78	11	152	33	24	17	25	1.96
106039521--106039689	44	4.0	42	76	12	157	34	25	16	23	1.95
106044425--106044549	29	4.3	29	83	1	153	24	12	30	32	1.93
106052648--106052699	16	3.3	15	76	12	59	13	3	0	82	0.80
106052649--106052715	23	2.9	24	82	10	77	13	4	1	80	0.93
106052656--106052715	6	10.2	6	78	10	61	13	5	1	80	0.96
106061331--106061356	13	2.0	13	100	0	52	23	0	30	46	1.53
106064148--106064217	27	2.5	28	88	2	106	31	25	14	28	1.95
106072085--106072154	27	2.5	28	88	2	106	31	25	14	28	1.95
106072956--106073080	63	2.0	62	98	1	241	35	21	16	27	1.94
106077953--106078177	124	1.8	124	86	1	326	31	11	23	34	1.90
106078171--106078301	40	3.3	40	82	4	167	24	24	27	23	2.00
106080227--106080295	28	2.5	28	95	2	122	18	10	27	43	1.82
106082107--106082150	19	2.4	18	85	7	54	40	9	0	50	1.34
106084534--106084602	28	2.5	28	95	2	122	18	10	27	43	1.82
106086420--106086463	19	2.4	18	85	7	54	40	9	0	50	1.34
106088287--106088393	40	2.7	40	76	5	117	28	25	16	28	1.97
106102508--106102588	42	1.9	43	85	7	112	34	27	16	22	1.95
106113019--106113190	46	3.7	46	74	15	183	30	27	19	22	1.98
106113024--106113194	93	1.8	93	92	2	290	29	28	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106115583--106115662	30	2.7	30	82	7	99	56	15	17	11	1.67
106115583--106115653	15	4.7	15	81	6	90	57	12	18	11	1.64
106115585--106115662	15	5.2	15	78	9	79	56	15	16	11	1.67
106124301--106124333	15	2.2	15	100	0	66	18	24	6	51	1.68
106126112--106126242	30	4.5	30	86	8	171	28	25	13	32	1.94
106126111--106126242	58	2.3	58	85	4	176	28	26	13	31	1.94
106134077--106134207	30	4.5	30	86	8	171	28	25	13	32	1.94
106134076--106134207	58	2.3	58	85	4	176	28	26	13	31	1.94
106157316--106157372	25	2.2	26	81	3	71	43	19	15	21	1.87
106161084--106161125	15	2.8	15	81	0	57	64	11	0	23	1.27
106180045--106180084	13	3.1	13	85	0	53	20	35	27	17	1.95
106185096--106185260	44	3.8	44	85	6	219	24	21	29	24	1.99
106192372--106192438	25	2.7	25	86	4	82	32	17	11	37	1.87
106198637--106198765	40	3.2	40	81	2	152	23	23	28	24	1.99
106203532--106203570	18	2.2	18	100	0	78	30	15	12	41	1.85
106218172--106218255	28	3.0	29	84	3	100	27	14	27	30	1.95
106224820--106224893	29	2.6	29	95	0	139	27	14	31	27	1.95
106224877--106224952	29	2.6	29	78	0	89	22	19	35	22	1.96
106224820--106224952	58	2.3	58	80	2	133	24	17	33	24	1.96
106226396--106226687	50	5.8	50	77	5	268	31	24	17	26	1.97
106226449--106226637	101	1.9	100	85	3	263	31	24	17	25	1.97
106226452--106226685	101	2.3	101	80	5	251	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106226405--106226683	151	1.8	151	84	4	384	32	25	16	25	1.96
106229123--106229260	57	2.4	58	79	3	145	31	22	18	26	1.97
106230771--106230968	67	3.0	66	79	3	182	25	26	15	33	1.95
106232321--106232460	48	2.9	47	79	5	147	30	18	26	24	1.98
106234892--106235088	49	3.8	53	79	11	214	21	25	16	37	1.93
106240506--106240568	31	2.0	31	87	0	90	23	20	15	39	1.91
106240779--106240871	23	4.0	23	92	2	141	33	19	20	26	1.96
106240926--106240992	20	3.3	20	79	8	82	31	19	11	37	1.88
106248611--106248673	31	2.0	31	87	0	90	25	23	15	34	1.95
106248863--106248958	25	4.0	24	86	9	133	29	21	20	28	1.98
106248884--106248957	23	3.1	23	94	3	121	31	20	20	28	1.97
106249008--106249074	20	3.3	20	93	0	116	32	20	11	34	1.90
106249008--106249063	11	5.5	11	71	16	57	32	19	12	35	1.89
106251103--106251321	40	5.5	39	81	5	215	25	26	22	26	2.00
106251141--106251322	80	2.3	80	84	2	240	25	26	22	25	2.00
106256026--106256110	19	4.6	19	73	16	88	31	1	3	63	1.19
106256297--106256350	28	1.9	28	84	0	72	31	1	3	62	1.23
106258832--106258980	40	3.8	39	77	13	144	25	24	27	22	2.00
106258831--106258996	79	2.1	79	82	6	203	25	23	27	23	2.00
106265713--106265879	40	4.2	40	79	6	169	26	22	26	24	2.00
106272973--106273085	40	2.8	40	85	5	147	23	23	28	24	2.00
106275819--106275949	30	4.5	30	86	8	171	28	25	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106275818--106275949	58	2.3	58	85	4	176	28	26	13	31	1.94
106283771--106283901	30	4.5	30	86	8	171	28	25	13	32	1.94
106283770--106283901	58	2.3	58	85	4	176	28	26	13	31	1.94
106288213--106288431	121	1.8	121	84	2	305	30	10	24	34	1.89
106288390--106288556	40	4.2	40	79	3	169	24	23	27	24	2.00
106290376--106290576	108	1.8	110	88	4	309	22	24	18	34	1.96
106290329--106290584	55	4.8	54	80	9	262	21	25	17	35	1.95
106292716--106292861	42	3.4	44	79	13	153	24	19	24	31	1.98
106292709--106292872	43	3.8	43	74	13	158	25	18	24	31	1.98
106294154--106294271	43	2.8	42	76	6	123	24	18	25	31	1.98
106294910--106294953	23	2.0	22	86	4	61	25	0	20	54	1.45
106299517--106299577	28	2.2	28	83	13	83	36	21	22	19	1.95
106306751--106306975	124	1.8	124	86	1	326	31	11	23	34	1.90
106306970--106307099	40	3.3	39	82	4	163	23	24	27	23	2.00
106310455--106310534	27	3.0	27	83	9	101	35	18	23	22	1.96
106310802--106310861	28	2.2	27	96	3	111	25	31	18	25	1.97
106315939--106316029	29	3.2	29	93	1	157	25	13	30	30	1.93
106320757--106320826	27	2.5	28	95	2	124	28	14	27	30	1.95
106320757--106320838	27	3.0	27	85	8	78	29	15	24	30	1.96
106328399--106328468	27	2.5	28	95	2	124	28	14	27	30	1.95
106328399--106328480	27	3.0	27	85	8	78	29	15	24	30	1.96
106330269--106331013	49	15.7	48	75	14	557	29	28	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106334586--106334697	40	2.8	40	94	0	188	25	29	20	25	1.99
106336821--106337047	49	4.7	48	90	3	305	27	29	9	33	1.88
106344497--106344656	63	2.5	63	79	12	171	31	17	26	24	1.97
106348854--106349025	67	2.6	66	81	7	170	31	16	29	22	1.96
106348878--106349061	67	2.8	64	78	8	203	28	16	30	23	1.96
106359455--106359632	40	4.5	40	90	2	261	26	28	22	22	1.99
106360628--106360692	32	2.0	32	96	0	121	47	24	6	21	1.73
106367600--106367777	40	4.5	40	92	2	270	25	28	23	22	1.99
106374162--106374267	29	3.7	29	83	5	124	23	31	16	29	1.96
106382091--106382225	29	4.7	29	86	3	155	23	31	15	29	1.95
106382037--106382226	58	3.3	58	77	4	179	24	33	16	26	1.96
106385930--106385991	28	2.2	29	88	2	90	25	12	30	30	1.93
106392822--106393095	49	5.7	49	94	1	439	33	8	28	28	1.87
106395660--106395827	40	4.2	40	82	1	176	24	26	22	26	2.00
106398369--106398588	40	5.6	40	80	7	227	24	24	25	25	2.00
106398814--106398856	22	2.0	22	81	9	52	32	9	13	44	1.76
106406653--106406836	40	4.6	40	84	6	239	25	23	26	24	2.00
106406653--106406836	80	2.3	80	88	3	264	25	23	26	24	2.00
106407098--106407141	22	2.0	22	82	8	54	31	11	13	43	1.80
106408954--106408997	23	2.0	22	86	4	61	25	0	20	54	1.45
106416142--106416264	46	2.8	44	80	11	160	25	31	20	22	1.98
106416145--106416312	46	3.7	43	79	12	135	23	31	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106417258--106417307	19	2.6	19	100	0	100	16	34	34	16	1.90
106425167--106425306	48	2.9	48	81	9	169	24	30	19	25	1.98
106437344--106437386	18	2.4	18	96	0	77	37	11	20	30	1.89
106446508--106446664	39	4.0	39	92	0	233	28	26	19	25	1.98
106456058--106456224	40	4.2	40	78	6	160	25	22	27	24	2.00
106464059--106464225	40	4.2	40	78	6	160	25	22	27	24	2.00
106466321--106466351	14	2.1	15	94	5	55	38	19	12	29	1.89
106469475--106469508	2	16.5	2	93	6	59	50	2	0	47	1.16
106471042--106471164	43	2.9	42	76	7	122	33	13	23	30	1.92
106474567--106474612	22	2.1	22	100	0	92	54	13	19	13	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433