genome.fa.s6.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  154  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48059316--48059482	80	2.1	79	83	7	205	25	27	21	25	1.99
48060307--48060352	17	2.5	19	74	22	53	34	23	17	23	1.96
48067313--48067479	40	4.2	40	82	2	185	25	27	21	25	1.99
48067313--48067479	80	2.1	79	83	7	205	25	27	21	25	1.99
48068304--48068349	17	2.5	19	74	22	53	34	23	17	23	1.96
48069295--48069402	42	2.6	42	81	0	135	22	29	22	25	1.99
48071547--48071740	47	4.1	47	90	2	309	27	21	22	28	1.99
48071547--48071739	23	8.2	24	90	3	295	27	21	22	28	1.99
48071797--48071853	9	5.9	9	73	15	51	35	21	8	35	1.84
48071785--48071855	20	3.5	20	94	0	124	32	21	11	35	1.89
48071790--48071844	11	5.4	11	70	16	55	30	20	12	36	1.90
48072913--48072943	15	2.1	15	93	0	53	70	0	19	9	1.14
48073841--48073880	20	1.9	22	85	10	57	42	10	0	47	1.37
48076145--48076174	8	3.8	8	90	0	51	50	23	23	3	1.64
48076588--48076703	27	4.3	26	81	7	133	18	21	23	37	1.94
48076588--48076703	55	2.2	53	86	7	162	18	21	23	37	1.94
48080630--48080689	30	2.0	30	86	0	84	38	6	25	30	1.81
48086525--48086603	15	5.4	15	77	10	83	10	17	13	58	1.63
48086516--48086602	29	3.0	29	81	8	95	10	17	16	56	1.67
48088976--48089156	46	3.9	46	81	9	233	20	21	29	27	1.98
48088978--48089148	93	1.8	93	96	0	315	20	22	29	27	1.98
48090108--48090821	373	1.9	373	88	3	1080	33	14	20	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48103862--48103946	27	3.1	28	90	5	122	20	22	22	35	1.96
48109296--48109364	33	2.1	33	94	0	120	26	15	26	31	1.96
48117879--48117932	27	2.0	27	85	0	72	38	14	5	40	1.70
48122813--48123030	40	5.5	40	89	2	307	24	22	26	26	2.00
48131234--48131399	46	3.6	45	76	15	171	28	28	19	22	1.98
48131235--48131403	91	1.8	92	91	2	277	28	28	20	21	1.98
48135038--48135167	40	3.2	40	82	4	165	23	28	24	23	2.00
48135038--48135200	40	4.1	40	78	5	145	22	28	24	25	1.99
48139150--48139336	71	2.7	68	93	5	281	18	28	18	34	1.95
48139173--48139336	71	2.3	71	100	0	328	18	28	17	35	1.94
48139173--48139370	71	2.8	70	92	3	276	20	28	17	33	1.95
48146715--48146901	71	2.7	68	93	5	281	18	28	18	34	1.95
48146738--48146901	71	2.3	71	100	0	328	18	28	17	35	1.94
48146738--48146935	71	2.8	70	92	3	276	20	28	17	33	1.95
48147796--48148045	40	6.2	40	90	1	385	25	24	28	22	1.99
48155057--48155306	40	6.2	40	90	1	385	25	24	28	22	1.99
48157019--48157128	26	4.2	26	93	4	193	30	6	27	36	1.82
48157019--48157128	54	2.1	52	94	3	193	30	6	27	36	1.82
48158614--48158666	26	2.0	26	82	7	63	39	22	13	24	1.90
48162361--48162453	40	2.3	40	90	0	150	36	21	20	21	1.95
48162766--48162851	7	11.9	7	70	7	64	23	1	27	47	1.59
48162795--48162847	15	3.6	14	87	2	70	20	1	33	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48163048--48163115	26	2.6	27	93	4	113	42	7	4	45	1.52
48163383--48163895	262	2.0	261	87	2	735	29	16	19	33	1.95
48163371--48163912	261	2.1	261	85	3	741	29	16	20	33	1.95
48164035--48164073	13	2.9	14	88	7	62	25	35	0	38	1.56
48166265--48166330	29	2.3	29	89	5	98	45	0	0	54	0.99
48166267--48166321	15	3.7	15	71	22	53	47	0	0	52	1.00
48166589--48166773	9	20.7	9	83	3	221	44	21	0	33	1.57
48169847--48169955	47	2.3	47	85	1	137	32	27	10	30	1.89
48169980--48170121	31	4.6	31	90	1	205	29	27	14	28	1.95
48170097--48170225	50	2.5	51	86	2	179	27	24	13	34	1.92
48170547--48170576	2	15.0	2	92	0	51	46	0	3	50	1.18
48175660--48175755	31	3.1	31	91	4	142	16	9	21	52	1.72
48175833--48176058	43	5.3	43	85	1	292	28	31	18	21	1.96
48177409--48177441	14	2.3	15	89	5	50	69	0	0	30	0.88
48177852--48177942	17	4.9	18	68	19	55	43	3	1	51	1.25
48177919--48178053	61	2.3	55	80	10	153	42	4	5	48	1.45
48180212--48180286	29	2.6	29	91	0	123	32	13	24	30	1.93
48190924--48191009	43	2.0	43	93	0	145	50	6	2	40	1.42
48193492--48193621	49	2.7	49	78	4	138	24	28	17	29	1.97
48193642--48193856	46	4.6	48	81	8	237	23	28	19	28	1.98
48193642--48193856	94	2.3	93	85	6	292	23	28	19	28	1.98
48201335--48201378	19	2.4	19	85	11	56	29	6	11	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48202976--48203057	40	2.0	40	97	0	155	53	4	14	26	1.61
48205098--48205185	24	3.7	23	75	13	65	17	26	22	34	1.96
48206404--48206470	30	2.2	30	91	0	107	19	32	29	17	1.95
48219075--48219353	24	11.6	24	96	0	486	20	17	25	36	1.94
48227043--48227319	24	11.6	24	94	2	461	20	17	25	36	1.94
48227043--48227319	142	1.9	143	92	2	468	20	17	25	36	1.94
48227256--48227341	24	3.5	24	72	17	70	25	17	23	33	1.96
48234363--48234612	40	6.2	40	90	1	376	22	28	24	25	1.99
48242432--48242638	24	8.6	24	96	0	360	36	25	17	20	1.94
48258765--48258797	16	2.1	16	100	0	66	30	18	12	39	1.87
48264225--48264390	68	2.4	67	82	4	181	34	15	24	25	1.94
48270857--48270903	20	2.3	20	92	0	76	34	12	21	31	1.91
48270867--48270903	11	3.5	11	78	14	51	35	13	21	29	1.92
48270962--48271021	26	2.3	26	85	0	75	23	28	18	30	1.98
48271236--48271319	30	2.8	31	87	8	129	29	16	27	26	1.97
48278909--48279130	40	5.7	39	84	9	267	24	22	27	26	2.00
48286032--48286199	40	4.2	40	82	1	185	24	26	22	26	2.00
48287914--48288077	40	4.1	40	82	0	211	24	21	27	26	2.00
48294812--48294849	19	2.1	18	85	9	51	13	18	2	65	1.37
48299219--48299764	49	11.1	49	88	8	833	30	27	8	34	1.86
48299313--48299375	18	3.3	18	73	26	67	34	25	3	36	1.72
48299304--48299381	39	2.0	39	100	0	156	33	25	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48299304--48299364	18	3.1	20	70	29	67	34	22	6	36	1.81
48299199--48299735	188	2.8	189	89	7	815	30	27	8	34	1.86
48299519--48299738	107	2.1	107	97	0	413	30	28	7	34	1.85
48299343--48299764	156	2.8	147	94	4	718	30	27	8	34	1.86
48303357--48303588	40	5.8	40	93	0	383	26	25	19	28	1.99
48305465--48305550	36	2.3	36	90	7	129	26	32	19	20	1.97
48305619--48306115	49	10.1	49	88	8	744	30	27	8	34	1.87
48305705--48305782	39	2.0	39	97	0	147	32	28	6	33	1.82
48305870--48306089	107	2.1	107	97	0	413	30	27	8	34	1.86
48305744--48306115	156	2.4	149	94	3	636	30	27	8	33	1.87
48311612--48311710	28	3.5	29	91	5	159	32	26	12	29	1.92
48317050--48317213	40	4.1	40	82	3	213	23	22	28	26	1.99
48321302--48321452	40	3.8	40	77	13	134	27	23	26	22	2.00
48321339--48321468	40	3.2	40	77	4	138	24	23	27	23	2.00
48329323--48329473	40	3.8	40	77	13	134	27	23	26	22	2.00
48329360--48329489	40	3.2	40	77	4	138	24	23	27	23	2.00
48335355--48335621	24	11.6	24	89	9	405	20	17	24	37	1.94
48335355--48335621	66	3.9	67	90	6	376	20	17	24	37	1.94
48335353--48335621	90	2.9	93	86	10	401	20	17	24	37	1.94
48335453--48335643	48	4.1	48	86	9	189	22	17	23	36	1.94
48343316--48343592	24	11.6	24	95	1	477	20	17	25	37	1.94
48353179--48353216	14	2.7	14	100	0	76	42	18	15	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48357946--48358167	43	5.2	44	83	5	276	45	22	16	14	1.84
48357966--48358167	20	9.5	20	69	16	93	46	22	16	14	1.83
48357942--48358167	85	2.6	85	87	1	326	46	23	16	14	1.84
48358092--48358162	22	3.3	20	73	23	56	45	21	16	16	1.86
48365869--48365941	34	2.2	33	83	9	87	16	24	19	39	1.91
48367800--48367966	40	4.2	40	80	3	169	26	22	26	24	2.00
48369467--48369525	31	1.9	31	100	0	118	30	33	0	35	1.58
48370844--48370883	21	1.9	21	85	10	55	30	20	7	42	1.79
48373027--48373106	39	2.1	39	100	0	160	32	27	10	30	1.89
48387330--48387512	40	4.6	40	83	3	181	23	26	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433