genome.fa.s6.2.7.7.80.10.50.1000.334.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  334  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104485579--104485764	80	2.3	81	78	9	202	25	20	26	27	1.99
104493620--104493795	40	4.4	40	87	6	209	25	22	26	25	2.00
104497264--104497289	13	2.0	13	100	0	52	23	38	15	23	1.92
104498516--104498695	43	4.2	43	81	4	211	31	29	16	23	1.96
104499561--104499589	2	14.5	2	100	0	58	51	0	0	48	1.00
104502165--104502274	40	2.8	40	85	0	148	26	23	26	23	2.00
104502165--104502314	40	3.8	39	80	7	133	26	22	26	24	2.00
104509788--104509897	40	2.8	40	85	0	148	26	23	26	23	2.00
104509788--104509937	40	3.8	39	80	7	133	26	22	26	24	2.00
104512857--104513182	48	6.8	48	80	5	345	28	18	26	25	1.98
104512851--104513179	96	3.4	96	88	0	433	28	18	26	25	1.98
104516449--104516535	37	2.3	36	92	5	138	27	33	18	20	1.96
104516610--104516759	49	3.0	49	96	0	273	31	26	8	34	1.85
104518767--104518949	40	4.6	40	83	3	181	23	26	22	27	1.99
104526848--104527030	40	4.6	40	83	3	181	23	26	22	27	1.99
104533209--104533262	27	2.0	27	100	0	108	18	7	25	48	1.74
104533902--104534052	54	2.8	54	91	0	239	31	7	20	40	1.80
104533900--104534059	81	2.0	81	86	0	221	33	7	20	39	1.80
104533900--104534052	27	5.7	27	82	0	198	32	7	20	39	1.80
104533910--104534079	81	2.1	81	77	2	180	34	7	20	38	1.81
104534047--104534233	27	6.9	27	86	4	252	40	9	22	27	1.84
104534046--104534241	54	3.6	54	89	1	295	39	8	23	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104537329--104537386	28	2.1	28	100	0	116	17	12	24	46	1.81
104538025--104538175	54	2.8	54	90	0	239	30	7	21	40	1.81
104538023--104538180	81	2.0	81	87	0	226	31	7	21	39	1.81
104538023--104538175	27	5.7	27	82	0	198	31	7	21	39	1.80
104538033--104538202	81	2.1	81	77	2	180	32	7	21	38	1.82
104538169--104538364	27	7.3	27	82	6	227	40	8	23	27	1.83
104538169--104538364	54	3.6	54	84	4	261	40	8	23	27	1.83
104543488--104543635	43	3.4	43	83	6	176	27	17	23	31	1.97
104544655--104544679	13	1.9	13	100	0	50	24	24	24	28	2.00
104557365--104557530	40	4.2	40	75	9	135	26	22	26	24	2.00
104565356--104565522	40	4.2	40	78	7	153	26	22	26	24	2.00
104567403--104567447	22	2.0	22	83	8	56	55	2	4	37	1.32
104567582--104567616	12	3.2	11	88	11	54	65	0	0	34	0.93
104568759--104568859	43	2.3	43	83	6	116	28	15	21	33	1.95
104570991--104571212	48	4.6	48	86	6	247	30	28	16	25	1.96
104571043--104571213	48	3.6	48	92	3	265	29	28	16	25	1.97
104591737--104591869	48	2.8	48	81	2	169	25	16	27	30	1.97
104591822--104591954	42	3.1	41	74	16	110	27	17	24	30	1.97
104599823--104599990	42	3.9	42	85	7	203	33	25	13	27	1.93
104599964--104600026	33	1.9	33	90	0	99	26	30	15	26	1.96
104602447--104602656	39	5.4	39	78	1	197	32	3	20	43	1.69
104602458--104602608	77	1.9	78	89	1	232	31	3	19	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104602460--104602642	78	2.4	77	84	0	231	32	4	19	43	1.71
104603276--104603330	26	2.1	26	100	0	110	34	40	7	18	1.78
104612417--104612546	40	3.2	40	82	4	165	23	28	24	23	2.00
104615847--104616056	40	5.2	40	87	2	305	25	24	28	21	1.99
104623984--104624193	40	5.2	40	87	2	305	25	24	28	21	1.99
104635535--104635633	41	2.4	41	80	11	114	24	24	25	26	2.00
104636117--104636396	29	9.7	29	92	1	420	24	32	17	25	1.97
104642554--104642684	30	4.5	30	86	8	171	32	13	25	28	1.94
104642554--104642684	58	2.2	58	86	4	174	32	13	25	28	1.94
104650339--104650469	30	4.5	30	86	8	171	32	13	25	28	1.94
104650339--104650469	58	2.2	58	86	4	174	32	13	25	28	1.94
104666632--104666669	20	1.9	20	88	0	58	34	2	10	52	1.50
104668280--104668347	28	2.5	27	92	4	111	42	27	10	19	1.83
104671965--104672032	28	2.5	27	92	4	111	42	27	10	19	1.83
104675515--104676105	48	12.3	48	96	0	986	29	26	7	35	1.85
104677189--104677217	2	14.5	2	100	0	58	51	0	0	48	1.00
104680413--104680588	46	3.8	46	79	12	216	20	21	29	28	1.98
104680410--104680581	93	1.8	93	96	0	317	20	21	29	27	1.98
104691783--104691924	40	3.5	40	83	1	124	27	23	26	22	1.99
104691822--104691950	40	3.2	39	84	6	152	24	22	27	25	2.00
104693312--104693475	40	4.1	40	92	1	258	26	28	23	21	1.99
104699193--104699336	43	3.3	43	79	6	132	22	16	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104708800--104708966	81	2.1	81	96	0	307	35	5	23	34	1.80
104713524--104713586	32	2.0	32	87	6	92	42	28	15	12	1.84
104714383--104714623	27	8.8	28	83	6	264	29	9	20	40	1.85
104714388--104714623	81	2.9	81	87	3	314	28	10	19	41	1.84
104716379--104716417	20	1.9	20	89	5	60	38	38	2	20	1.66
104718186--104718286	32	3.2	32	79	0	103	33	21	17	26	1.96
104718313--104718369	27	2.1	27	83	0	69	36	17	17	28	1.93
104718774--104718835	27	2.3	27	82	0	70	30	16	14	38	1.88
104718827--104719057	27	8.6	26	78	8	196	29	7	21	42	1.79
104718827--104719051	53	4.2	53	77	7	206	29	7	20	43	1.78
104718787--104719057	107	2.5	107	80	8	300	28	8	21	41	1.82
104718827--104719058	80	2.9	79	80	6	279	28	7	21	42	1.79
104723878--104723929	27	1.9	27	88	0	77	32	17	19	30	1.95
104723917--104724276	27	13.4	27	89	1	490	25	20	19	34	1.96
104729310--104729369	27	2.3	26	85	2	75	35	20	23	21	1.96
104729366--104729391	2	13.0	2	100	0	52	50	0	0	50	1.00
104729424--104729475	27	2.0	26	84	3	68	34	21	26	17	1.95
104730115--104730447	27	12.4	27	82	4	244	26	19	18	35	1.95
104730148--104730443	107	2.8	107	85	2	389	26	19	18	35	1.95
104730133--104730443	80	3.9	80	84	3	401	26	19	18	35	1.95
104738488--104738573	43	2.0	43	86	0	118	29	29	17	24	1.97
104741271--104741300	12	2.5	12	100	0	60	53	6	16	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104745958--104745996	13	3.1	13	88	7	62	64	0	0	35	0.94
104745957--104745996	12	3.2	12	89	6	62	62	0	0	37	0.95
104745952--104746007	25	2.3	25	75	3	60	48	0	1	50	1.11
104746218--104746252	18	1.9	18	94	0	61	48	0	8	42	1.33
104750154--104750746	48	12.3	48	92	0	943	36	7	25	30	1.83
104752241--104752515	40	6.9	40	87	5	346	24	21	26	26	1.99
104752532--104752622	28	3.2	27	78	9	92	20	14	29	35	1.92
104761737--104761908	93	1.8	93	96	0	317	27	29	21	20	1.98
104761730--104761905	46	3.8	46	79	12	216	28	29	21	20	1.98
104765094--104765124	2	15.5	2	100	0	62	48	0	0	51	1.00
104765663--104765829	40	4.2	40	82	2	185	24	26	22	26	2.00
104773575--104773742	40	4.2	40	82	1	185	24	26	22	26	2.00
104786645--104786750	52	2.0	52	98	0	203	39	13	27	19	1.89
104790731--104790793	30	2.1	30	84	0	81	14	19	14	52	1.75
104793790--104793904	29	4.0	29	80	6	119	28	26	14	29	1.95
104793781--104793889	58	1.9	57	86	1	155	27	28	15	28	1.96
104794131--104794164	15	2.3	15	89	0	50	2	17	20	58	1.51
104801765--104801804	21	1.9	21	89	0	62	22	27	37	12	1.90
104802932--104803158	47	4.9	48	76	10	193	21	30	19	28	1.97
104802971--104803153	46	3.9	46	75	9	158	21	31	19	27	1.97
104806086--104806231	43	3.4	42	81	4	141	33	25	16	24	1.96
104807540--104807575	18	2.0	18	88	0	54	30	2	25	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104813702--104813852	43	3.6	42	77	7	146	41	19	15	22	1.90
104813891--104814020	42	3.1	42	78	4	136	43	15	16	24	1.86
104814073--104814112	21	1.9	21	85	10	55	35	25	0	40	1.56
104814036--104814228	101	1.9	100	90	8	313	40	20	4	34	1.73
104820382--104820563	40	4.6	40	81	4	181	23	25	22	28	1.99
104820382--104820565	79	2.3	80	80	6	196	23	25	22	28	1.99
104824132--104824261	40	3.2	40	82	4	165	23	24	28	23	2.00
104832105--104832272	40	4.2	40	80	3	178	24	23	27	24	2.00
104835697--104837679	532	3.7	532	92	0	3263	33	12	17	36	1.88
104838375--104838415	20	2.0	20	85	0	55	41	0	14	43	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433