Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  345  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108413988--108414017
15
1.9
16
93
6
53
36
20
0
43
1.52
108414074--108414186
42
2.7
43
79
4
131
25
26
20
27
1.99
108414082--108414231
44
3.5
43
75
11
128
26
26
19
27
1.99
108416640--108416752
42
2.7
42
74
9
104
27
20
25
26
1.99
108417888--108417918
16
1.9
16
93
0
53
41
0
22
35
1.54
108425163--108425378
55
4.0
54
82
6
267
33
17
25
23
1.96
108425170--108425372
108
1.9
110
89
4
322
32
18
25
24
1.97
108426985--108427382
43
9.3
43
79
9
345
26
16
25
31
1.97
108426985--108427382
86
4.7
86
81
4
414
26
16
25
31
1.97
108427328--108427516
56
3.4
56
86
1
263
26
12
25
34
1.92
108427341--108427546
112
1.8
112
81
4
254
26
14
25
33
1.94
108427836--108427873
2
19.5
2
94
5
69
47
0
0
52
1.00
108430371--108430408
18
2.1
18
85
14
51
36
28
10
23
1.88
108430370--108430412
19
2.3
19
80
19
54
34
25
13
25
1.93
108436492--108436670
41
4.3
41
86
5
227
36
23
18
20
1.95
108436492--108436674
84
2.2
83
85
6
246
36
24
19
20
1.95
108454864--108454992
47
2.8
46
80
12
149
22
20
27
29
1.99
108457062--108457108
21
2.2
21
84
0
67
29
29
14
25
1.95
108457069--108457115
21
2.3
21
92
3
78
29
25
12
31
1.93
108462512--108462536
12
2.1
12
100
0
50
52
16
0
32
1.44
108465483--108465561
38
2.1
38
95
0
140
20
15
13
50
1.77
108468071--108468143
27
2.8
26
77
10
78
38
16
21
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108471042--108471066
12
2.1
12
100
0
50
52
16
0
32
1.44
108478526--108478570
20
2.2
20
80
0
54
46
4
6
42
1.50
108479316--108479411
35
2.7
34
82
6
111
34
26
15
23
1.95
108486443--108486552
35
3.1
35
82
7
125
33
24
18
23
1.97
108495376--108495557
40
4.6
40
92
2
287
26
26
23
23
2.00
108500002--108500036
13
2.7
13
95
0
61
31
28
22
17
1.96
108513339--108513382
22
2.0
22
95
0
79
20
13
25
40
1.89
108515687--108515821
47
2.9
47
96
0
243
31
27
17
24
1.97
108518465--108518633
46
3.7
46
79
10
191
22
18
28
29
1.98
108518462--108518632
93
1.8
93
91
0
279
22
19
29
29
1.98
108518862--108518899
19
2.0
20
85
15
53
36
0
23
39
1.55
108527191--108527223
13
2.6
13
90
4
50
48
12
0
39
1.40
108530051--108530136
6
13.7
6
77
11
75
76
1
5
16
1.03
108530070--108530139
25
2.8
24
81
12
70
80
1
4
14
0.94
108530070--108530139
19
3.7
19
78
14
65
80
1
4
14
0.94
108535456--108535488
13
2.6
13
90
4
50
48
12
0
39
1.40
108547668--108547980
39
8.0
37
84
6
311
31
27
19
22
1.97
108547684--108547980
78
3.8
78
87
2
409
30
26
19
22
1.98
108547667--108547980
117
2.7
116
84
4
355
31
27
19
21
1.97
108549751--108549814
31
2.1
31
96
0
119
23
21
15
39
1.92
108550006--108550124
24
5.0
24
85
9
154
26
24
21
27
1.99
108550006--108550124
47
2.5
48
89
8
172
26
24
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108550175--108550234
20
3.0
20
80
0
84
30
18
13
38
1.89
108550277--108550324
25
1.9
25
86
0
69
25
16
25
33
1.96
108555755--108556028
39
7.0
38
87
3
323
30
27
21
21
1.98
108555771--108556028
78
3.3
78
88
2
365
29
26
21
22
1.99
108555754--108556028
117
2.3
117
88
3
401
30
27
21
21
1.98
108558033--108558439
46
8.6
51
71
17
176
23
29
19
28
1.98
108578137--108578182
10
4.7
10
76
15
51
43
8
0
47
1.34
108587539--108587578
13
3.1
13
92
0
71
20
32
32
15
1.93
108590120--108590161
21
2.0
21
100
0
84
33
9
9
47
1.68
108595606--108595635
15
2.1
15
93
6
53
53
26
0
20
1.46
108596398--108596584
48
3.9
48
85
0
239
35
29
14
20
1.93
108599383--108599567
79
2.3
81
83
9
229
23
27
23
24
2.00
108599376--108599567
40
4.8
39
76
8
163
23
28
23
25
2.00
108605584--108605650
11
6.1
11
72
18
59
19
2
2
74
1.08
108605578--108605625
14
3.1
15
79
14
53
20
2
0
77
0.88
108605613--108605660
25
2.0
24
83
4
60
16
6
6
70
1.28
108619184--108619209
13
2.0
13
100
0
52
15
23
23
38
1.92
108623171--108623292
29
4.2
29
89
1
174
31
31
13
22
1.93
108623505--108623557
16
3.3
16
94
0
88
15
20
15
49
1.80
108635803--108635831
2
15.0
2
92
7
51
48
0
0
51
1.00
108642754--108642905
43
3.5
42
80
7
155
23
19
26
30
1.98
108649446--108649609
42
3.9
42
82
4
186
28
25
15
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108649446--108649609
85
1.9
84
82
1
202
28
25
15
31
1.96
108652206--108652259
22
2.3
23
75
12
58
20
7
3
68
1.30
108664025--108664151
55
2.3
55
79
2
130
31
25
26
16
1.96
108668575--108668622
24
2.0
24
100
0
96
41
8
16
33
1.78
108669271--108669442
43
4.0
44
77
7
183
28
13
23
34
1.93
108671787--108671963
48
3.7
48
88
3
268
21
16
26
35
1.95
108671785--108671970
96
1.9
96
90
4
295
21
17
26
34
1.96
108691973--108692078
39
2.7
39
85
2
122
26
21
29
22
1.99
108691927--108692078
40
3.8
40
80
6
166
25
21
28
24
1.99
108691927--108692078
79
1.9
80
80
6
175
25
21
28
24
1.99
108693520--108693727
94
2.2
94
82
3
249
22
26
20
31
1.98
108693513--108693727
46
4.6
48
75
7
183
21
26
20
31
1.98
108694167--108694223
30
1.9
30
85
7
80
29
22
12
35
1.91
108694305--108694343
20
2.0
20
85
10
53
35
17
0
46
1.49
108695898--108696047
48
3.1
48
90
3
223
19
17
29
34
1.94
108697918--108699131
605
2.0
605
95
0
2160
27
24
21
27
1.99
108699331--108699424
6
14.3
6
70
24
57
15
5
3
75
1.11
108699341--108699397
16
3.7
15
81
6
69
14
5
1
78
0.99
108699326--108699396
21
3.4
22
84
7
85
15
4
1
78
0.97
108699326--108699397
27
2.7
27
83
16
89
15
4
1
79
0.96
108699348--108699427
32
2.5
32
84
6
92
16
5
3
75
1.13
108701484--108701657
46
3.7
46
81
9
174
29
19
29
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108702709--108702755
21
2.2
21
84
0
58
14
29
23
31
1.95
108703111--108703145
14
2.5
14
90
9
54
68
0
20
11
1.20
108712561--108713089
282
1.9
282
88
1
810
32
16
24
26
1.96
108715710--108715794
41
2.1
41
95
0
152
35
8
22
34
1.84
108725112--108725359
40
6.2
40
80
3
277
25
27
22
24
2.00
108725103--108725359
80
3.2
80
88
1
347
25
27
22
24
2.00
108725139--108725363
80
2.8
80
92
0
351
24
27
23
25
2.00
108729422--108729990
280
2.0
281
98
0
1097
31
18
10
39
1.85
108732920--108733049
40
3.2
40
82
2
172
24
27
23
24
2.00
108732936--108733086
40
3.8
39
81
6
153
22
27
23
27
1.99
108732920--108733086
80
2.1
79
83
7
205
23
26
22
26
2.00
108740672--108740838
40
4.2
40
81
2
167
23
26
22
26
2.00
108740688--108740838
80
1.9
79
83
6
198
23
27
23
26
2.00
108749562--108749728
40
4.2
40
82
2
185
24
26
22
26
2.00
108757568--108757734
40
4.2
40
82
2
185
24
26
22
26
2.00
108762028--108762073
20
2.2
21
84
7
58
32
4
17
45
1.68
108762754--108762883
47
2.8
47
82
2
136
24
17
26
31
1.97
108764404--108764494
45
2.0
45
97
0
173
30
8
20
39
1.83
108771922--108772046
29
4.3
29
87
1
171
26
13
30
29
1.94
108773806--108773878
37
2.0
37
97
0
137
26
32
19
21
1.97
108773961--108774211
49
5.1
49
97
0
475
30
27
8
33
1.86
108783448--108783502
24
2.3
24
83
0
74
61
5
1
30
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108783734--108783903
92
1.8
93
80
12
206
50
6
4
39
1.47
108795369--108795639
18
14.6
18
70
13
129
38
15
11
35
1.84
108795468--108795515
19
2.6
19
90
6
73
43
10
10
35
1.73
108795762--108795882
53
2.3
53
92
0
206
42
23
17
16
1.88
108795759--108795893
53
2.4
58
80
14
190
42
22
18
17
1.89
108796064--108796096
16
2.1
16
88
11
50
36
9
0
54
1.32
108797490--108797528
16
2.4
16
86
0
51
0
28
2
69
1.02
108797596--108797630
2
18.0
2
94
5
63
48
0
0
51
1.00
108799795--108799976
40
4.6
40
93
2
296
23
23
26
26
2.00
108807700--108807879
40
4.6
40
90
4
278
23
22
27
26
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433