genome.fa.s6.2.7.7.80.10.50.1000.346.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  346  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108807700--108807879	79	2.3	80	90	4	278	23	22	27	26	2.00
108820628--108820799	93	1.8	93	94	0	308	27	30	21	20	1.98
108820620--108820795	46	3.8	46	81	10	214	28	29	21	21	1.98
108823163--108823251	30	3.0	30	80	8	101	57	15	16	10	1.65
108823163--108823242	15	5.4	15	80	7	92	58	13	17	10	1.62
108823174--108823251	15	5.2	15	78	9	79	56	15	16	11	1.67
108826168--108826338	92	1.8	93	88	3	265	28	28	20	22	1.98
108826160--108826334	46	3.8	46	75	15	173	29	28	20	22	1.98
108830228--108830535	47	6.7	44	74	12	228	22	28	19	28	1.98
108830225--108830544	141	2.3	136	80	11	344	23	28	20	28	1.99
108830228--108830535	93	3.3	94	82	6	310	22	28	19	28	1.98
108830879--108830936	30	1.9	30	89	0	89	25	25	15	32	1.95
108833238--108833397	79	2.0	79	98	0	311	27	21	10	40	1.85
108835865--108836032	43	4.0	44	66	16	122	26	18	22	32	1.97
108843279--108843372	47	2.0	47	100	0	188	48	8	14	27	1.73
108843675--108843784	42	2.6	42	75	7	107	24	19	24	31	1.98
108845668--108845737	32	2.2	32	97	0	131	38	14	1	45	1.53
108846933--108846995	20	3.2	20	90	0	90	20	28	28	22	1.98
108847994--108848051	28	2.1	28	100	0	116	36	24	10	29	1.88
108854988--108855048	28	2.2	27	85	5	77	36	0	39	24	1.56
108857723--108857768	23	2.0	24	86	4	67	26	6	47	19	1.73
108858504--108858545	22	1.9	22	85	0	57	45	14	0	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108858555--108858640	15	5.8	15	70	8	50	25	2	29	43	1.67
108858556--108858678	7	17.0	7	70	9	50	23	1	30	43	1.63
108859183--108859322	41	3.4	41	85	0	181	25	22	18	33	1.97
108859180--108859332	82	1.9	82	88	2	236	23	23	19	33	1.97
108860364--108860388	7	3.6	7	100	0	50	84	0	0	16	0.63
108871390--108871507	42	2.8	42	87	5	159	31	25	15	27	1.95
108880598--108880663	33	2.0	34	88	5	100	43	10	12	33	1.76
108882017--108882076	30	2.0	30	90	0	93	38	8	25	28	1.84
108884318--108884362	24	1.9	23	82	13	56	40	6	20	33	1.78
108889978--108890191	40	5.3	40	87	3	254	25	26	22	25	2.00
108889942--108890191	80	3.2	80	83	3	301	25	26	22	25	2.00
108889967--108890191	120	1.9	119	83	6	294	25	26	22	24	2.00
108892561--108892620	30	2.0	30	90	0	93	38	8	25	28	1.84
108895007--108895158	80	1.9	80	82	2	189	24	29	23	22	1.99
108895048--108895158	40	2.8	39	85	9	136	22	28	25	23	1.99
108895051--108895199	40	3.8	38	78	5	129	22	26	24	26	2.00
108895048--108895197	80	1.9	80	83	5	196	22	27	24	26	2.00
108903070--108903218	80	1.9	80	81	2	183	22	30	24	22	1.99
108903111--108903218	40	2.7	38	85	8	128	21	29	25	23	1.99
108905609--108905678	27	2.6	27	88	2	104	27	15	27	30	1.96
108908577--108908728	80	1.9	80	82	2	189	23	29	24	22	1.99
108908618--108908728	40	2.8	39	85	9	136	22	28	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108908621--108908767	40	3.8	38	77	7	120	22	27	23	27	1.99
108916637--108916788	80	1.9	80	82	2	189	23	29	24	22	1.99
108916678--108916788	40	2.8	39	85	9	136	22	28	25	23	1.99
108916681--108916829	40	3.8	38	78	5	129	22	26	24	26	2.00
108916678--108916827	80	1.9	80	83	5	196	22	27	24	26	2.00
108919906--108919950	24	1.9	23	82	13	56	40	6	20	33	1.78
108922464--108922593	40	3.2	40	82	4	165	23	28	24	23	2.00
108922464--108922627	40	4.1	40	78	4	145	21	28	25	25	1.99
108928097--108928154	30	1.9	30	89	0	89	37	10	22	29	1.87
108931384--108931626	50	4.8	50	78	2	234	30	25	16	27	1.96
108937312--108937340	12	2.3	13	94	5	51	37	0	17	44	1.49
108940277--108940419	38	3.7	38	87	6	191	21	23	25	29	1.99
108940269--108940451	38	4.7	39	84	3	174	22	22	24	30	1.99
108949548--108949656	24	4.6	23	85	7	137	33	23	17	24	1.96
108949548--108949656	48	2.3	48	91	3	175	33	23	17	24	1.96
108951301--108951429	38	3.4	38	83	5	161	22	20	23	34	1.97
108956789--108956838	20	2.5	20	90	0	73	28	10	4	58	1.49
108959929--108959972	21	2.0	21	86	4	61	47	4	4	43	1.44
108961795--108961929	51	2.7	51	80	1	173	39	5	12	42	1.65
108966996--108967119	51	2.5	51	85	1	160	40	6	12	41	1.68
108968478--108968514	16	2.2	17	86	13	51	16	0	8	75	1.02
108968479--108968539	6	10.3	6	75	16	56	13	0	8	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108968479--108968542	29	2.2	29	83	5	76	14	0	7	78	0.96
108978633--108978693	20	3.0	20	77	20	65	42	3	0	54	1.17
108980479--108980599	58	2.1	57	80	8	138	33	19	9	36	1.85
108980680--108980824	27	5.3	27	74	17	88	61	0	4	33	1.20
108980694--108980824	28	4.7	27	71	18	76	62	0	4	32	1.21
108980719--108980885	19	8.8	19	71	9	83	61	2	6	29	1.34
108980774--108980841	28	2.4	28	87	7	93	61	1	4	32	1.24
108981029--108981113	19	4.3	19	70	12	64	35	4	0	60	1.18
108981160--108981324	83	2.0	84	80	2	188	36	6	15	41	1.72
108982838--108982872	17	2.0	18	88	5	54	17	14	5	62	1.49
108986762--108986869	26	4.2	26	90	0	171	31	8	25	35	1.85
108989312--108989336	2	12.5	2	100	0	50	52	0	0	48	1.00
108989365--108989400	12	3.3	11	88	11	56	61	0	0	38	0.96
108989599--108989629	13	2.3	14	94	5	55	51	6	0	41	1.27
108989691--108989730	12	3.4	12	82	3	55	60	2	0	37	1.11
108990195--108990238	20	2.2	20	88	8	63	36	2	61	0	1.09
108991549--108991733	79	2.3	81	80	7	209	24	27	24	24	2.00
108991549--108991733	40	4.7	40	78	6	171	24	27	24	24	2.00
108999829--108999935	51	2.1	52	92	1	180	32	8	24	34	1.85
108999829--108999935	26	4.2	26	89	2	171	32	8	24	34	1.85
109003055--109003096	17	2.5	17	96	0	75	40	11	16	30	1.85
109006768--109006853	40	2.2	39	85	2	109	25	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109006852--109006899	2	24.0	2	95	0	87	52	0	0	47	1.00
109007076--109007117	20	2.1	20	100	0	84	47	14	9	28	1.75
109015800--109015832	16	2.1	16	100	0	66	24	24	30	21	1.99
109020178--109020352	47	3.7	46	76	15	171	29	18	28	23	1.98
109020173--109020346	94	1.9	94	89	4	271	28	18	29	23	1.98
109020289--109020406	60	2.0	60	96	0	218	28	20	27	22	1.99
109024539--109024563	11	2.3	11	100	0	50	48	0	16	36	1.46
109025616--109025703	6	14.7	6	98	0	167	31	0	17	51	1.46
109025819--109025982	48	3.4	48	87	0	229	34	18	21	26	1.96
109025819--109026038	96	2.3	96	80	1	217	30	19	24	25	1.98
109041348--109041652	72	4.2	73	73	4	235	35	6	13	45	1.69
109041805--109041829	13	1.9	13	100	0	50	40	16	0	44	1.47
109044707--109044731	8	3.1	8	100	0	50	52	0	0	48	1.00
109045529--109045575	24	2.0	24	84	16	62	34	0	14	51	1.43
109045735--109045868	40	3.4	39	74	7	110	29	16	21	32	1.95
109047657--109047708	21	2.5	21	100	0	104	38	17	11	32	1.85
109049821--109049862	5	8.4	5	100	0	84	40	0	0	59	0.97
109051613--109051748	54	2.5	54	91	0	218	32	22	16	28	1.96
109055762--109056001	43	5.6	43	78	4	227	24	17	27	30	1.97
109055751--109056011	86	3.0	87	79	7	275	26	16	27	29	1.97
109058020--109058067	5	9.6	5	97	0	87	16	0	2	81	0.79
109069109--109069156	23	2.1	23	96	0	87	29	12	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109070265--109070468	82	2.5	82	88	0	309	50	15	5	27	1.67
109072051--109072222	93	1.8	93	96	0	317	27	30	22	20	1.98
109072043--109072218	46	3.8	46	81	10	232	28	29	21	20	1.98
109074602--109074690	30	3.0	30	80	8	101	57	15	16	10	1.65
109074602--109074681	15	5.4	15	80	7	92	58	13	17	10	1.62
109074613--109074690	15	5.2	15	78	9	79	56	15	16	11	1.67
109077603--109077774	93	1.8	93	96	0	317	27	30	22	20	1.98
109077595--109077770	46	3.8	46	81	10	232	28	29	21	20	1.98
109084261--109084294	17	2.0	17	88	0	50	23	2	0	73	0.97
109085178--109085248	34	2.1	34	100	0	142	42	5	23	28	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433