Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  141  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43421541--43421597
19
2.9
18
78
14
60
66
3
5
24
1.28
43421560--43421636
3
24.3
3
72
17
50
61
3
2
32
1.28
43421560--43421650
28
3.4
28
71
21
77
60
4
3
31
1.33
43422780--43422813
14
2.4
14
90
0
50
0
29
11
58
1.33
43423349--43423950
94
6.4
94
85
0
722
27
21
16
34
1.95
43423410--43423655
44
5.3
44
65
18
140
25
22
18
33
1.96
43424042--43424137
50
1.9
50
80
4
113
22
17
17
41
1.90
43426902--43426931
2
15.0
2
100
0
60
50
0
0
50
1.00
43427640--43427784
40
3.6
40
82
0
182
26
24
25
23
2.00
43438936--43438992
23
2.5
23
91
0
87
17
24
31
26
1.97
43440411--43440588
46
3.8
46
72
7
171
30
28
19
21
1.97
43440418--43440590
93
1.9
93
88
0
265
30
29
19
21
1.97
43448641--43448674
2
17.0
2
100
0
68
50
0
0
50
1.00
43449987--43450164
46
3.8
46
78
7
207
30
28
19
21
1.98
43449994--43450166
93
1.9
93
91
0
283
29
28
19
21
1.98
43458002--43458035
2
17.0
2
87
0
50
50
2
2
44
1.32
43458675--43458748
29
2.6
29
89
4
105
25
16
32
25
1.96
43466095--43466128
2
17.0
2
93
0
59
50
2
0
47
1.16
43466753--43466826
29
2.6
29
89
4
105
25
16
32
25
1.96
43475952--43476093
40
3.5
40
83
0
158
22
28
23
26
1.99
43479017--43479064
15
3.1
15
83
13
62
77
0
2
20
0.88
43482721--43482768
20
2.5
20
86
3
62
62
2
8
27
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43482755--43482798
17
2.4
18
77
14
54
56
9
0
34
1.31
43491706--43491732
14
1.9
14
100
0
54
11
14
7
66
1.43
43496290--43496330
19
2.1
20
86
4
57
46
2
0
51
1.14
43502216--43502398
91
2.0
91
100
0
366
50
14
7
27
1.69
43503299--43503366
28
2.4
28
85
2
82
54
4
1
39
1.30
43506610--43506676
34
2.0
34
81
0
80
37
17
8
35
1.82
43511389--43511491
29
3.6
28
80
5
116
29
33
16
21
1.95
43518293--43518395
29
3.6
28
77
5
107
30
33
15
21
1.94
43521831--43521933
29
3.6
28
80
5
116
29
33
16
21
1.95
43528039--43528110
29
2.5
29
82
6
85
29
31
16
22
1.96
43541525--43541559
17
2.1
17
94
0
61
34
11
20
34
1.88
43543428--43543477
16
2.9
17
72
27
52
58
0
2
40
1.10
43543444--43543474
15
2.1
15
93
0
53
64
0
0
35
0.94
43548744--43548789
23
2.0
23
100
0
92
21
21
21
34
1.97
43555533--43555558
8
3.2
8
100
0
52
34
11
0
53
1.37
43556302--43556345
21
2.1
21
100
0
88
52
4
4
38
1.42
43556746--43557053
152
2.0
152
91
1
492
27
26
11
35
1.90
43564929--43565189
130
2.0
130
93
0
450
37
16
22
22
1.93
43570678--43570734
30
1.9
30
85
3
80
33
14
22
29
1.93
43571081--43571208
47
2.8
43
80
15
125
28
19
26
25
1.99
43578219--43578275
30
1.9
30
85
3
80
31
12
26
29
1.92
43578635--43578790
46
3.3
46
77
11
133
28
17
26
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43582155--43582213
27
2.2
27
100
0
118
13
32
23
30
1.93
43583866--43583904
15
2.5
15
87
8
51
66
0
2
30
1.05
43584092--43584122
14
2.2
14
100
0
62
51
22
12
12
1.74
43588879--43588914
18
2.0
18
94
0
63
27
8
22
41
1.82
43589049--43589131
29
2.8
31
75
15
86
19
36
2
42
1.64
43592938--43592996
31
1.9
31
86
10
86
64
0
0
35
0.94
43592956--43593014
24
2.5
24
83
5
75
62
0
0
37
0.95
43593047--43593072
11
2.4
11
100
0
52
76
0
0
23
0.78
43594244--43594268
7
3.6
7
100
0
50
48
0
0
52
1.00
43605042--43605078
19
1.9
19
94
0
65
35
18
10
35
1.86
43606213--43606278
18
3.7
18
97
0
123
34
13
12
39
1.82
43606706--43606939
72
3.2
72
89
2
346
24
6
14
54
1.64
43608987--43609063
13
5.9
13
84
0
91
35
25
7
31
1.85
43613422--43613605
40
4.6
39
75
6
138
26
23
27
22
2.00
43613462--43613650
80
2.4
81
77
4
186
23
24
29
22
1.99
43622377--43622426
18
2.8
18
100
0
100
12
32
34
22
1.90
43623630--43623685
22
2.6
21
75
10
60
64
12
8
14
1.50
43625154--43625208
23
2.3
23
90
3
83
60
1
1
36
1.18
43628873--43628906
16
2.1
16
88
0
50
73
2
5
17
1.16
43634250--43634277
2
14.0
2
100
0
56
50
0
0
50
1.00
43639174--43639330
68
2.4
64
81
9
174
26
29
16
27
1.97
43641542--43641697
39
4.0
39
87
5
208
26
19
30
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43641555--43641737
78
2.3
79
85
2
235
24
20
31
23
1.98
43641544--43641741
39
5.1
39
85
3
202
23
19
31
25
1.98
43641592--43641764
79
2.2
78
82
5
197
24
20
30
24
1.98
43647515--43647569
9
5.7
9
83
10
56
36
1
0
61
1.06
43647517--43647614
11
8.5
11
74
19
69
34
3
1
61
1.18
43647529--43647614
14
6.1
14
72
12
52
34
3
1
60
1.21
43647517--43647653
25
6.0
23
75
18
110
35
4
2
58
1.30
43647569--43647662
45
2.0
47
82
11
115
32
6
4
56
1.44
43647819--43647845
2
13.5
2
100
0
54
48
0
0
51
1.00
43647915--43647966
26
2.0
26
84
0
68
28
9
3
57
1.48
43660097--43660595
204
2.4
205
89
1
743
30
18
21
28
1.97
43662508--43662567
9
6.9
9
77
9
54
36
1
0
61
1.06
43662510--43662608
11
8.5
11
74
20
71
35
3
1
60
1.19
43662511--43662600
14
6.4
14
70
18
53
36
3
1
58
1.22
43662512--43662648
25
6.0
24
71
18
96
35
4
2
57
1.31
43662546--43662648
44
2.2
44
80
14
111
33
4
2
58
1.34
43662912--43662963
26
2.0
26
84
0
68
28
9
3
57
1.48
43676046--43676143
28
3.5
28
84
4
108
29
16
24
29
1.96
43683722--43683819
28
3.5
28
84
4
108
29
16
24
29
1.96
43686572--43686735
46
3.5
46
74
14
147
29
17
29
23
1.97
43686617--43686780
46
3.6
44
80
9
141
27
18
29
24
1.98
43690256--43690413
43
3.7
43
76
12
155
23
19
25
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43692988--43693012
13
1.9
13
100
0
50
32
0
4
64
1.12
43693749--43693788
20
2.0
21
85
5
55
42
0
20
37
1.52
43694162--43694187
2
13.0
2
100
0
52
50
0
0
50
1.00
43700835--43700859
2
12.5
2
100
0
50
48
0
0
52
1.00
43702728--43703087
94
3.8
95
76
10
314
28
20
28
22
1.99
43702728--43703087
47
7.7
46
72
14
220
28
20
28
22
1.99
43712287--43712338
27
2.0
26
84
3
68
34
17
19
28
1.94
43712322--43712692
27
13.7
27
78
6
266
40
19
8
30
1.81
43712935--43713053
41
2.9
41
92
0
193
21
23
29
26
1.99
43721221--43721259
6
6.5
6
81
0
51
15
7
0
76
0.99
43733961--43734092
29
4.6
29
82
1
140
25
32
17
25
1.97
43746161--43746234
29
2.6
29
95
0
139
27
31
14
27
1.95
43746102--43746234
58
2.3
58
80
2
133
24
33
17
24
1.96
43753982--43754113
29
4.6
29
82
1
140
25
32
17
25
1.97
43760342--43760457
23
5.1
22
76
11
90
32
18
22
25
1.97
43760342--43760457
46
2.5
46
79
9
121
32
18
22
25
1.97
43761885--43761926
19
2.2
19
100
0
84
14
21
26
38
1.91
43763083--43763136
25
2.2
25
93
0
90
25
9
38
25
1.86
43768362--43768510
80
1.9
80
81
2
183
22
30
24
22
1.99
43768403--43768510
40
2.7
38
85
8
128
21
29
25
23
1.99
43778116--43778245
40
3.2
40
84
4
174
22
24
29
23
1.99
43786104--43786232
40
3.2
40
82
6
165
22
24
29
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43791802--43791900
20
4.9
20
65
9
58
21
28
19
31
1.97
43791802--43791925
40
3.1
40
87
1
169
20
25
19
33
1.96
43797132--43797164
17
1.9
17
93
0
57
33
24
18
24
1.97
43821941--43822090
40
3.8
38
75
10
124
24
23
27
24
2.00
43821900--43822072
80
2.2
80
84
7
226
26
22
26
24
2.00
43822019--43822105
40
2.2
40
82
0
111
25
24
26
24
2.00
43823247--43823470
27
8.3
27
84
0
268
41
15
12
31
1.84
43823247--43823470
81
2.8
81
89
0
331
41
15
12
31
1.84
43825059--43825161
29
3.6
27
81
5
98
29
33
16
21
1.95
43826902--43826963
27
2.3
27
85
0
79
22
11
17
48
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433