genome.fa.s6.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  117  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35690052--35690152	28	3.5	28	86	6	114	29	13	26	29	1.94
35698009--35698109	28	3.5	28	86	6	114	29	13	26	29	1.94
35702376--35702424	24	2.0	24	100	0	98	20	22	8	48	1.75
35710964--35711093	40	3.3	39	83	4	163	23	28	25	23	1.99
35719026--35719155	40	3.3	39	83	4	163	23	28	25	23	1.99
35722760--35722835	35	2.2	35	78	0	80	32	17	19	30	1.95
35724551--35724727	50	3.6	49	83	3	212	28	20	29	22	1.98
35724551--35724778	100	2.3	98	81	5	253	28	20	28	22	1.98
35729467--35729670	27	7.6	27	88	0	282	26	12	18	43	1.85
35736347--35736375	15	1.9	15	100	0	58	27	13	6	51	1.66
35738423--35738630	40	5.2	39	81	7	240	23	20	29	27	1.99
35738419--35738630	80	2.7	80	87	3	311	23	20	28	27	1.99
35745030--35745165	32	4.5	30	75	17	95	39	19	3	37	1.69
35745060--35745165	32	3.5	31	75	23	100	39	19	2	37	1.67
35749444--35749661	40	5.5	40	93	1	350	22	22	28	26	1.99
35757400--35757612	39	5.5	39	92	5	342	23	22	29	25	1.99
35759639--35759729	45	2.0	45	91	0	146	36	23	14	26	1.93
35766073--35766151	30	2.6	30	77	15	74	25	12	16	45	1.82
35766295--35766328	10	3.4	10	84	15	52	17	14	17	50	1.79
35775282--35775316	11	3.2	11	92	8	54	65	17	0	17	1.27
35776236--35776301	29	2.3	29	84	5	91	53	3	7	36	1.45
35787018--35787230	96	2.2	97	86	0	293	29	20	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35787014--35787299	50	5.9	49	73	9	221	28	20	26	23	1.99
35787080--35787299	96	2.3	96	83	4	255	27	22	26	23	1.99
35789802--35789851	23	2.1	25	85	10	70	72	4	4	20	1.18
35794624--35794848	40	5.7	39	87	3	272	25	28	23	23	2.00
35799141--35799312	49	3.5	49	80	3	161	26	19	29	25	1.98
35805731--35805920	40	4.8	40	86	1	238	25	23	27	23	2.00
35805730--35805962	80	2.9	80	81	3	254	27	23	26	22	2.00
35805731--35805962	40	5.8	39	81	8	209	27	23	26	22	2.00
35805731--35805962	120	1.9	120	81	5	281	27	23	26	22	2.00
35814102--35814243	40	3.5	40	83	1	124	27	23	26	22	1.99
35814141--35814269	40	3.2	39	84	6	152	24	22	27	25	2.00
35824435--35824585	40	3.8	40	80	6	164	26	23	27	23	2.00
35824472--35824601	40	3.2	40	82	2	163	23	23	27	25	2.00
35832466--35832631	40	4.2	39	79	9	169	26	22	27	23	2.00
35834823--35834950	48	2.7	48	81	2	141	22	30	21	25	1.99
35834820--35835065	47	5.2	47	81	2	206	23	28	22	25	1.99
35834916--35835065	47	3.2	47	92	0	255	24	28	22	24	2.00
35836557--35836601	14	3.0	15	87	6	56	57	15	15	11	1.64
35839146--35839218	30	2.4	30	93	0	119	30	19	12	38	1.88
35840049--35840428	48	8.0	48	78	5	308	27	28	18	25	1.98
35840049--35840424	96	3.9	94	78	6	373	26	29	19	25	1.98
35846689--35846733	21	2.1	21	100	0	90	31	37	8	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35848667--35848710	20	2.2	20	87	0	61	20	2	9	68	1.28
35854936--35854989	27	2.0	27	100	0	108	37	18	11	33	1.86
35857968--35858175	40	5.2	40	82	0	200	25	22	25	25	2.00
35857969--35858175	80	2.6	80	81	4	229	25	22	26	25	2.00
35860278--35860315	20	1.9	20	88	0	58	34	2	10	52	1.50
35861934--35862002	28	2.5	28	95	2	122	43	27	10	18	1.82
35869686--35869755	25	2.8	25	86	4	97	24	24	24	27	2.00
35872344--35872373	14	2.1	14	100	0	60	13	40	16	30	1.87
35877534--35877605	25	2.9	25	89	0	117	23	23	26	26	2.00
35877651--35877711	21	2.9	21	82	4	79	32	18	14	34	1.91
35882370--35882493	63	2.0	63	82	9	155	29	6	29	33	1.83
35886457--35886495	13	3.0	13	88	0	60	15	33	30	20	1.94
35898670--35898716	3	15.7	3	100	0	94	68	0	0	31	0.90
35902391--35902425	16	2.3	15	90	5	52	62	2	2	31	1.24
35902613--35902683	2	36.5	2	73	16	51	54	1	4	39	1.28
35902615--35902683	25	2.8	26	78	8	81	55	1	4	39	1.29
35902709--35902760	24	2.2	23	83	10	61	59	0	3	36	1.16
35903248--35903331	30	2.8	30	88	0	123	21	5	45	27	1.75
35907163--35907187	2	12.5	2	100	0	50	48	0	0	52	1.00
35908292--35908321	3	10.0	3	92	0	51	36	30	0	33	1.58
35909947--35909975	14	2.1	14	100	0	58	27	0	0	72	0.85
35910039--35910078	19	2.2	19	86	13	57	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35911530--35911571	16	2.6	16	88	3	57	45	2	2	50	1.27
35914651--35914722	35	2.1	35	97	0	135	58	15	15	11	1.63
35916395--35916439	17	2.7	18	76	13	51	44	11	15	28	1.81
35923378--35923685	39	8.0	39	94	1	505	22	25	28	23	1.99
35928522--35928793	39	7.0	39	93	0	454	22	25	29	23	1.99
35931323--35931350	14	2.0	14	100	0	56	35	7	14	42	1.73
35936773--35936824	20	2.6	20	96	0	95	19	30	32	17	1.95
35942990--35943020	2	15.5	2	100	0	62	51	0	0	48	1.00
35949290--35949335	23	2.1	21	84	11	58	60	6	2	30	1.34
35950992--35951075	26	3.2	26	94	0	150	34	4	23	36	1.76
35952864--35953149	136	2.1	137	96	0	529	24	18	25	31	1.97
35954528--35954578	9	5.8	9	88	4	77	11	7	0	80	0.90
35954529--35954578	26	1.9	26	91	0	82	12	8	0	80	0.92
35954594--35954667	36	2.0	36	85	12	98	22	5	2	68	1.23
35954621--35954668	18	2.7	17	81	9	60	29	4	0	66	1.10
35954655--35954745	23	4.1	22	70	18	64	42	0	2	54	1.12
35954657--35954737	23	3.7	21	76	11	65	39	0	2	58	1.12
35954684--35954750	23	2.9	23	82	10	66	40	0	1	58	1.07
35954763--35954844	37	2.2	37	82	4	103	43	1	3	51	1.27
35954878--35954911	9	3.8	9	85	14	52	17	0	2	79	0.86
35954871--35954917	18	2.6	17	80	9	58	17	2	2	78	0.94
35955101--35955157	13	4.5	12	79	12	53	21	1	1	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35955259--35955301	22	2.0	23	81	9	54	46	0	2	51	1.13
35955500--35955588	10	9.4	9	72	11	63	52	2	1	43	1.20
35955500--35955588	19	4.7	18	73	12	63	52	2	1	43	1.20
35955498--35955602	29	3.6	29	75	5	95	54	1	1	41	1.22
35955558--35955646	34	2.7	34	78	16	98	53	1	1	43	1.15
35955611--35955652	14	3.3	13	78	15	52	59	2	0	38	1.10
35959110--35959216	30	3.6	30	92	0	178	27	26	22	24	2.00
35962345--35962387	21	2.1	20	87	12	61	60	0	2	37	1.10
35962363--35962419	23	2.5	22	77	5	60	56	5	1	36	1.32
35962513--35962583	26	2.7	26	80	8	81	42	1	2	53	1.24
35962516--35962598	25	3.4	25	77	11	73	46	1	2	49	1.22
35962730--35962795	26	2.5	27	74	13	75	42	0	0	57	0.98
35962751--35962797	16	2.8	18	75	15	55	40	0	0	59	0.97
35962953--35963040	24	3.6	24	73	11	65	53	6	0	39	1.28
35962953--35963042	25	3.7	24	72	19	71	53	6	0	40	1.27
35963061--35963146	21	4.0	22	75	13	79	55	2	1	40	1.20
35963059--35963148	22	4.1	21	74	14	67	54	2	1	42	1.20
35963136--35963192	18	3.1	18	75	10	53	66	3	5	24	1.28
35969532--35969560	10	2.7	11	94	5	51	82	0	0	17	0.66
35974553--35974687	55	2.5	55	89	3	193	28	30	20	21	1.98
35975447--35975710	49	5.6	48	74	11	190	24	29	18	26	1.98
35975447--35975762	47	6.7	47	74	9	191	24	28	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35976106--35976165	30	2.0	31	90	3	95	30	23	13	33	1.93
35982926--35983238	47	6.6	47	71	14	184	25	27	18	27	1.98
35984143--35984287	37	3.9	37	90	0	227	24	31	19	24	1.98
35984332--35984666	48	7.0	48	92	0	546	30	26	6	36	1.83
35988157--35988788	40	15.8	40	94	0	1066	26	26	21	25	1.99
35990013--35990120	37	2.9	37	98	0	207	24	33	19	23	1.97
35990165--35990834	48	14.0	48	90	1	1060	31	25	6	36	1.81
35996337--35996374	16	2.4	16	86	4	51	55	0	0	44	0.99
35996398--35996434	2	18.5	2	100	0	74	51	0	0	48	1.00
35999757--35999785	8	3.6	8	100	0	58	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433