genome.fa.s6.2.7.7.80.10.50.1000.338.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  338  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105765927--105766133	79	2.6	79	82	3	247	24	22	27	25	2.00
105767932--105767970	14	2.8	14	88	7	53	43	7	15	33	1.75
105768526--105768585	22	2.8	22	85	5	70	51	0	0	48	1.00
105772535--105772822	143	2.0	142	94	2	506	52	5	6	35	1.50
105775437--105775474	19	2.0	19	100	0	76	47	0	15	36	1.46
105783312--105783351	20	2.0	20	100	0	80	40	25	5	30	1.77
105784146--105784232	39	2.2	39	85	0	111	29	24	21	24	1.99
105786866--105786985	46	2.6	47	85	2	152	26	22	15	35	1.93
105797117--105797149	15	2.2	15	94	0	57	30	3	42	24	1.70
105797132--105797231	49	2.0	49	94	0	173	28	9	33	30	1.88
105797327--105797442	37	3.1	37	97	0	214	24	21	35	18	1.96
105803328--105803521	53	3.6	53	76	4	158	35	19	24	20	1.95
105810768--105810970	53	3.8	53	75	5	196	38	18	22	20	1.93
105818435--105818561	40	3.2	39	76	8	130	22	28	24	24	2.00
105826420--105826584	40	4.2	39	79	6	165	23	27	23	26	2.00
105828591--105828814	40	5.7	39	87	4	281	25	28	23	23	1.99
105836462--105836684	40	5.6	39	86	3	259	25	27	22	24	2.00
105836462--105836646	79	2.3	80	87	0	264	25	27	23	24	2.00
105841256--105841307	15	3.2	15	73	19	50	42	0	1	55	1.10
105841384--105841443	22	2.8	22	85	5	70	50	0	0	50	1.00
105845279--105845363	42	2.0	42	93	0	143	20	30	29	20	1.97
105845279--105845375	42	2.3	42	89	3	133	17	31	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105846059--105846112	18	3.3	18	66	28	57	22	50	7	20	1.73
105846049--105846146	30	3.3	30	95	0	169	24	50	7	18	1.72
105846628--105846673	25	1.9	24	91	8	76	34	2	0	63	1.07
105846707--105846767	25	2.4	25	83	5	79	36	4	1	57	1.30
105846785--105846847	25	2.5	24	84	7	72	30	4	6	58	1.43
105846706--105846885	79	2.3	78	78	8	186	32	6	3	56	1.43
105846909--105846964	25	2.3	24	79	14	62	37	16	3	42	1.65
105849057--105849225	40	4.2	40	79	6	157	26	25	21	26	2.00
105852981--105853147	40	4.2	40	80	5	169	26	22	26	24	2.00
105860136--105860304	40	4.2	40	77	6	139	25	24	21	27	1.99
105869708--105869885	40	4.5	40	91	2	279	24	23	27	25	2.00
105876762--105876804	13	3.4	13	81	12	54	13	9	4	72	1.26
105876674--105877067	98	4.1	99	82	10	449	25	16	18	39	1.91
105876993--105877576	73	7.9	73	85	5	759	30	16	20	32	1.95
105876973--105877582	147	4.1	146	88	3	773	30	16	19	33	1.94
105876993--105877582	222	2.7	221	92	2	949	30	16	20	32	1.95
105877654--105877686	14	2.4	14	94	0	57	18	12	6	63	1.48
105877551--105878073	90	5.8	91	76	12	398	26	16	17	38	1.91
105877510--105877840	180	1.8	178	85	5	461	28	18	18	35	1.94
105877752--105877938	99	1.9	98	86	7	270	27	15	17	39	1.90
105877878--105878081	86	2.4	85	84	5	239	29	14	19	36	1.91
105878714--105878869	30	5.3	30	93	4	264	25	50	6	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105878717--105878869	57	2.6	57	93	3	261	25	49	6	18	1.71
105879339--105879396	22	2.6	22	82	12	66	32	3	3	60	1.30
105879402--105879468	25	2.7	25	83	4	82	35	7	2	53	1.44
105879483--105879547	24	2.9	22	80	8	69	30	6	6	56	1.48
105879415--105879585	76	2.2	75	77	13	168	32	7	4	56	1.45
105879611--105879666	25	2.3	24	79	14	62	37	16	3	42	1.65
105881711--105881752	20	2.0	21	86	4	59	40	11	0	47	1.40
105886775--105886946	93	1.8	93	96	0	317	27	30	22	20	1.98
105886767--105886942	46	3.8	46	81	10	232	28	29	21	20	1.98
105888408--105888508	29	3.5	29	81	9	116	28	26	13	30	1.94
105888407--105888508	28	3.5	29	81	6	109	28	27	13	30	1.94
105896333--105896433	29	3.5	29	81	9	116	28	26	13	30	1.94
105896332--105896433	28	3.5	29	81	6	109	28	27	13	30	1.94
105900373--105900452	15	5.4	15	80	7	92	58	13	17	10	1.62
105903376--105903547	93	1.8	93	96	0	317	27	30	22	20	1.98
105903368--105903543	46	3.8	46	81	10	232	28	29	21	20	1.98
105913529--105913690	71	2.3	72	85	3	229	35	20	26	17	1.94
105916610--105916675	33	2.0	33	93	0	114	48	9	21	21	1.77
105917867--105917996	64	2.0	64	98	0	251	25	7	20	46	1.77
105929876--105929903	2	14.0	2	100	0	56	50	0	0	50	1.00
105930500--105930722	40	5.6	40	85	4	279	23	22	27	26	2.00
105930500--105930722	83	2.8	80	87	6	283	23	22	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105933139--105933356	46	4.6	47	78	8	194	23	26	19	30	1.98
105933185--105933359	94	1.9	92	84	7	237	22	28	20	29	1.98
105938861--105938961	28	3.5	28	83	6	105	30	13	25	29	1.94
105952518--105952682	40	4.1	39	77	7	145	26	26	20	26	1.99
105962075--105962375	47	6.3	48	93	1	430	31	8	31	28	1.87
105962225--105962300	22	3.3	22	67	22	66	31	10	31	26	1.90
105964067--105964139	29	2.5	29	100	0	146	28	15	28	27	1.96
105964230--105964254	2	12.5	2	100	0	50	48	0	0	52	1.00
105967512--105967743	40	5.8	40	91	0	347	26	21	27	25	1.99
105967919--105967970	25	2.1	25	85	7	70	28	7	32	30	1.85
105971309--105971496	49	3.8	49	78	5	225	27	18	26	28	1.98
105971308--105971491	100	1.8	100	95	0	332	26	18	26	28	1.98
105980590--105980777	49	3.8	49	79	5	216	30	25	17	26	1.97
105980595--105980791	100	2.0	101	88	2	297	30	26	17	24	1.97
105982927--105983069	27	5.3	27	83	5	146	27	24	8	39	1.84
105982949--105983069	53	2.3	54	86	4	165	28	23	6	41	1.79
105983085--105983222	27	5.1	27	75	7	93	39	21	10	28	1.86
105983100--105983222	54	2.3	54	81	2	149	40	21	8	29	1.83
105983100--105983250	27	5.6	26	76	6	133	41	21	8	29	1.82
105983100--105983249	81	1.9	81	81	8	189	41	20	8	29	1.82
105983228--105983313	27	3.1	27	79	11	102	39	16	9	34	1.80
105983367--105983431	27	2.4	27	75	10	62	33	15	24	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105984241--105984309	25	2.8	25	86	6	88	24	26	23	26	2.00
105984241--105984336	24	4.0	23	81	9	75	27	23	22	26	2.00
105984456--105984589	42	3.2	42	94	0	232	32	15	19	32	1.93
105984613--105984696	31	2.7	31	94	1	152	28	16	26	28	1.97
105987551--105987680	40	3.2	40	82	4	165	23	24	28	23	2.00
105989051--105989229	89	2.0	90	94	2	315	27	11	26	34	1.91
105990110--105990226	27	4.3	27	86	4	137	26	24	10	38	1.87
105990110--105990226	54	2.2	54	85	3	155	26	24	10	38	1.87
105990132--105990226	27	3.5	27	90	5	156	27	24	8	40	1.84
105990239--105990325	27	3.2	27	85	3	86	40	21	10	27	1.86
105990258--105990366	27	4.0	27	80	4	105	37	18	11	33	1.86
105990463--105990555	27	3.4	27	83	2	123	43	18	8	30	1.80
105990600--105990673	27	2.7	27	76	12	71	37	20	20	21	1.94
105992262--105992434	43	4.0	43	77	3	188	30	26	15	27	1.96
105992262--105992424	86	1.9	85	83	3	211	30	25	15	27	1.96
105995228--105995290	30	2.1	30	87	0	90	34	14	23	26	1.93
106003179--106003242	31	2.1	31	90	0	101	35	15	23	25	1.94
106007087--106007271	40	4.6	39	85	4	217	28	22	25	23	2.00
106007086--106007292	80	2.6	80	83	4	247	26	22	26	25	2.00
106007085--106007292	40	5.2	39	83	5	211	26	22	25	25	2.00
106015102--106015302	40	5.2	40	77	10	148	27	21	24	25	1.99
106015183--106015302	36	3.2	39	76	9	131	25	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106016835--106017491	27	24.8	27	81	7	706	40	8	22	28	1.84
106016835--106017491	105	6.2	107	82	8	706	40	8	22	28	1.84
106017443--106017691	27	9.3	27	82	4	211	32	8	20	38	1.83
106023272--106023403	29	4.6	29	82	1	140	25	32	17	25	1.97
106030996--106031073	29	2.7	29	83	0	102	21	33	17	26	1.96
106035514--106035561	25	1.9	25	86	0	69	33	25	16	25	1.96
106035600--106035656	9	5.9	9	73	15	51	35	8	21	35	1.84
106035598--106035668	20	3.5	20	94	0	124	35	11	21	32	1.89
106035609--106035663	11	5.4	11	70	16	55	36	12	20	30	1.90
106035715--106035905	24	8.1	23	91	3	292	28	21	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433