genome.fa.s6.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  163  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50765619--50765666	25	1.9	25	86	0	69	33	25	16	25	1.96
50765710--50765768	20	3.0	20	92	0	100	35	11	20	32	1.89
50765818--50765960	24	6.0	24	91	4	209	28	22	22	26	1.99
50765818--50765960	47	3.0	47	90	5	207	28	22	22	26	1.99
50765818--50765961	71	2.0	72	89	4	220	29	22	22	26	1.99
50766148--50766226	31	2.6	31	90	5	119	43	13	20	22	1.87
50772120--50772180	30	2.0	30	93	0	104	40	6	26	26	1.80
50772716--50772770	23	2.4	23	96	0	101	18	27	20	34	1.95
50772670--50772792	23	5.3	23	77	7	99	21	24	18	34	1.96
50775392--50775513	58	2.1	58	81	3	147	42	16	16	24	1.88
50776699--50776865	40	4.2	40	78	6	160	25	22	27	24	2.00
50783378--50783488	58	1.9	58	83	5	145	38	18	16	27	1.91
50784679--50784845	40	4.2	40	78	6	160	25	22	27	24	2.00
50790638--50790741	43	2.4	43	80	3	111	29	15	24	30	1.95
50793821--50794028	40	5.2	39	84	1	218	25	25	22	25	2.00
50793821--50794026	80	2.6	81	84	3	247	25	26	22	25	2.00
50796255--50796297	16	2.7	16	74	0	50	39	20	25	13	1.90
50796517--50796625	29	3.9	29	82	8	118	28	17	28	25	1.97
50800320--50800448	46	2.8	46	81	10	156	22	20	27	30	1.98
50800672--50800709	19	2.0	20	85	15	53	36	0	23	39	1.55
50805131--50805276	40	3.6	40	83	2	159	28	23	24	23	1.99
50810906--50811010	47	2.2	47	94	0	183	27	30	6	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50814692--50814761	29	2.4	29	85	2	88	27	17	30	25	1.97
50824546--50824786	47	5.1	47	91	0	365	33	11	28	26	1.91
50824593--50824671	25	3.3	25	67	22	78	34	10	26	29	1.89
50824575--50824693	22	5.1	22	63	25	66	33	13	28	24	1.93
50824757--50824940	98	1.9	96	91	4	298	35	7	26	30	1.83
50824756--50824940	48	3.8	48	88	5	291	35	7	26	30	1.83
50825086--50825157	37	1.9	37	91	0	117	22	18	30	29	1.97
50827658--50827742	38	2.3	37	82	11	102	56	12	14	16	1.67
50829847--50829998	42	3.6	42	76	7	137	31	17	24	26	1.97
50834922--50835034	43	2.6	42	80	1	127	28	15	23	31	1.96
50840609--50840695	32	2.7	32	81	0	111	31	20	21	26	1.98
50841215--50841340	27	4.7	27	88	4	184	30	9	21	38	1.85
50841178--50841335	54	2.9	54	84	3	185	30	10	19	39	1.85
50847086--50847212	49	2.5	51	91	3	195	28	28	14	28	1.96
50848318--50848409	45	2.0	45	100	0	184	31	26	8	33	1.87
50849039--50849193	80	1.9	81	88	3	233	25	26	21	25	2.00
50849029--50849196	40	4.2	39	83	8	187	25	26	22	26	2.00
50852580--50852681	28	3.5	29	81	6	109	28	27	14	29	1.95
50860467--50860568	28	3.5	29	81	6	109	28	27	14	29	1.95
50869242--50869295	28	1.9	28	100	0	108	38	22	5	33	1.77
50871651--50871789	44	3.2	43	79	5	156	32	25	17	24	1.97
50886593--50886644	26	2.0	26	96	0	95	36	17	3	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50894857--50895043	71	2.7	68	93	5	281	18	28	18	34	1.95
50894880--50895043	71	2.3	71	100	0	328	18	28	17	35	1.94
50894880--50895077	71	2.8	70	92	3	276	20	28	17	33	1.95
50899544--50899706	70	2.3	71	98	1	319	34	17	28	19	1.94
50901713--50901879	80	2.1	79	84	7	214	27	22	26	23	2.00
50901713--50901856	40	3.6	40	80	5	159	29	23	26	20	1.99
50901750--50901879	40	3.3	39	78	4	152	25	23	26	24	2.00
50906867--50906915	18	2.7	19	87	12	77	20	4	10	65	1.39
50924716--50924898	80	2.3	79	82	3	208	25	26	21	26	2.00
50924730--50924899	40	4.3	41	82	5	188	25	26	21	25	2.00
50932721--50932883	40	4.1	40	82	5	179	25	27	22	25	2.00
50932707--50932883	80	2.2	79	82	4	205	24	27	22	25	2.00
50934333--50934386	24	2.3	24	96	3	101	27	18	16	37	1.93
50943023--50943100	15	5.2	15	80	6	79	55	14	16	14	1.70
50943021--50943100	30	2.7	30	80	7	99	55	13	17	13	1.70
50946906--50946943	11	3.4	11	82	17	51	73	13	0	13	1.09
50946907--50946953	23	2.1	23	88	11	71	72	10	2	14	1.21
50949426--50949458	16	1.9	18	88	11	52	30	9	18	42	1.81
50949677--50949759	38	2.2	38	89	4	123	25	12	32	30	1.92
50950285--50950329	18	2.5	18	88	0	63	42	8	11	37	1.72
50950644--50950691	23	2.1	23	84	7	62	37	14	10	37	1.81
50954416--50954539	39	3.2	39	88	1	176	22	20	32	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50959114--50959179	33	2.0	33	87	0	96	27	6	42	24	1.78
50961494--50961588	47	2.0	47	100	0	190	42	25	6	26	1.79
50965072--50965123	27	1.9	27	100	0	104	61	15	1	21	1.43
50970463--50970487	8	3.1	8	100	0	50	24	12	40	24	1.88
50974967--50975142	79	2.2	79	83	6	207	26	20	27	26	1.99
50974967--50975128	39	4.1	39	84	4	202	25	20	27	26	1.99
50980626--50980770	40	3.7	40	85	7	181	24	21	27	26	1.99
50980626--50980803	79	2.2	79	81	8	193	25	21	26	25	1.99
50988710--50988895	40	4.7	40	87	5	234	24	21	26	27	1.99
50988763--50988918	80	2.0	79	84	6	208	25	19	26	28	1.99
50991687--50991731	20	2.6	16	83	16	54	44	0	24	31	1.54
50992069--50992103	9	3.9	9	84	0	52	28	11	11	48	1.74
50993832--50994069	118	2.0	118	96	0	440	36	16	23	23	1.94
51000683--51000719	19	1.9	19	100	0	74	16	16	18	48	1.81
51002030--51002056	12	2.2	12	100	0	54	18	7	37	37	1.79
51002835--51002860	13	2.0	13	100	0	52	15	0	15	69	1.20
51005061--51005094	9	3.7	9	84	7	50	44	8	5	41	1.60
51005061--51005099	19	2.1	19	100	0	78	41	10	5	43	1.61
51006880--51006958	29	2.7	29	86	5	106	27	32	15	24	1.95
51008055--51008092	19	2.1	18	85	9	51	13	18	2	65	1.37
51008689--51008831	57	2.5	57	82	7	166	28	18	23	29	1.98
51009802--51009840	19	2.1	19	100	0	78	46	5	15	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51011676--51011718	17	2.5	17	81	11	52	6	23	0	69	1.12
51012236--51012270	8	4.4	8	85	0	52	51	20	22	5	1.68
51012482--51012605	29	4.3	29	73	2	108	32	13	25	28	1.94
51021694--51021727	17	1.9	18	88	5	52	41	8	20	29	1.82
51028426--51028532	56	1.9	56	83	7	137	28	14	26	31	1.94
51032697--51032738	13	3.2	13	86	10	50	26	4	2	66	1.23
51043161--51043316	68	2.2	68	78	11	156	20	27	16	35	1.94
51045560--51045643	28	3.2	27	65	25	72	25	16	28	29	1.97
51045453--51045837	50	7.7	50	79	2	378	26	18	24	30	1.98
51045453--51045850	151	2.6	150	89	0	589	26	18	24	29	1.98
51045457--51045801	101	3.4	100	81	2	343	26	18	24	30	1.98
51047783--51047829	24	1.9	25	82	4	60	42	12	21	23	1.87
51052075--51052305	24	9.6	24	96	0	381	37	26	16	19	1.93
51059250--51059564	24	13.1	24	97	0	558	20	18	25	36	1.95
51067329--51067643	24	13.1	24	97	0	558	20	18	25	36	1.95
51071354--51071560	24	8.6	24	96	0	360	36	25	17	20	1.94
51074266--51074699	50	8.6	50	75	7	331	30	25	16	26	1.97
51074266--51074695	101	4.2	100	75	9	325	30	26	16	26	1.97
51074266--51074649	152	2.5	151	88	2	565	29	26	17	27	1.97
51082337--51082479	39	3.7	39	90	2	234	26	20	30	22	1.99
51082338--51082519	77	2.3	79	89	2	269	24	22	29	23	1.99
51092417--51092576	85	1.9	85	83	6	207	25	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51092420--51092576	43	3.7	43	73	10	142	26	17	24	31	1.97
51105135--51105236	29	3.6	28	76	10	91	29	31	16	22	1.96
51121895--51122066	93	1.8	93	96	0	317	27	29	21	20	1.98
51121888--51122063	46	3.8	46	79	12	216	28	29	21	20	1.98
51134469--51134499	16	1.9	16	93	0	53	35	22	0	41	1.54
51134466--51134505	20	2.0	20	85	0	53	37	22	0	40	1.54
51136006--51136259	55	4.8	53	77	10	213	21	23	18	37	1.94
51136595--51136653	30	2.0	30	83	6	75	28	23	6	40	1.80
51147353--51147519	40	4.2	40	82	2	176	24	26	22	25	2.00
51151957--51152128	93	1.8	93	96	0	317	27	29	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433