genome.fa.s6.2.7.7.80.10.50.1000.299.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  299  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93364616--93364764	79	1.9	79	84	5	203	22	27	24	25	2.00
93366482--93366618	38	3.4	38	87	10	202	22	22	16	38	1.92
93366810--93366904	24	4.0	24	85	10	124	26	24	21	28	1.99
93366810--93366903	47	2.0	49	85	12	133	26	24	21	27	1.99
93366955--93367014	20	3.0	20	90	0	102	31	20	11	36	1.88
93367057--93367104	25	1.9	25	86	0	69	25	16	25	33	1.96
93374821--93374934	31	3.5	31	89	8	147	23	21	14	40	1.90
93374798--93374960	38	4.4	38	84	11	232	22	22	17	38	1.93
93374821--93374960	69	2.0	69	98	0	271	23	21	15	39	1.92
93375152--93375245	24	4.0	24	84	12	115	26	24	20	28	1.99
93375296--93375355	20	3.0	20	90	0	102	31	20	11	36	1.88
93375398--93375445	25	1.9	25	86	0	69	25	16	25	33	1.96
93385625--93385794	52	3.4	51	90	4	256	27	12	30	28	1.93
93385620--93385794	51	3.5	51	84	7	241	27	13	30	29	1.94
93389796--93389825	16	1.9	15	93	6	51	30	10	13	46	1.75
93393506--93393748	48	5.1	48	80	7	253	23	17	30	28	1.97
93393506--93393748	96	2.5	96	85	1	299	23	17	30	28	1.97
93393515--93393784	48	5.6	48	79	6	228	25	16	30	27	1.97
93396201--93396238	19	2.0	19	100	0	76	47	0	10	42	1.38
93397022--93397049	14	2.0	14	100	0	56	21	28	7	42	1.79
93403894--93404034	23	6.0	24	91	5	218	29	21	21	28	1.98
93404085--93404151	20	3.3	20	93	0	116	32	20	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93404085--93404140	11	5.5	11	71	16	57	32	19	12	35	1.89
93410145--93410420	48	5.8	48	83	4	306	24	18	30	26	1.98
93423218--93423439	40	5.6	40	85	4	254	23	25	23	27	2.00
93428920--93428958	20	2.0	19	95	5	69	56	12	0	30	1.37
93431693--93431764	20	3.7	20	87	7	94	40	0	5	54	1.24
93432793--93432832	21	1.9	20	85	10	53	27	5	10	57	1.52
93436720--93436754	18	1.9	18	94	0	61	28	28	2	40	1.71
93439976--93440197	124	1.8	122	82	3	284	31	11	24	32	1.90
93440156--93440306	40	3.8	40	76	11	132	26	23	27	22	2.00
93440155--93440322	40	4.2	40	72	7	130	26	23	26	23	2.00
93443663--93443828	40	4.2	40	82	3	176	25	27	21	25	1.99
93443663--93443828	80	2.1	78	82	8	194	25	27	21	25	1.99
93444652--93444697	17	2.5	19	74	22	53	34	23	17	23	1.96
93446987--93447067	38	2.1	39	86	6	112	27	20	27	24	1.99
93454867--93455063	40	4.9	40	90	1	288	24	20	26	27	1.99
93460264--93460300	17	2.2	16	95	4	65	24	5	5	64	1.36
93469393--93469462	35	2.0	35	91	5	115	28	18	10	42	1.82
93472467--93472535	33	2.1	33	97	0	129	43	13	8	34	1.74
93474198--93474222	13	1.9	13	100	0	50	24	24	32	20	1.98
93478254--93478323	27	2.6	27	95	2	122	30	27	14	28	1.95
93489838--93490006	48	3.6	48	81	3	198	31	18	27	22	1.97
93490033--93490151	49	2.4	49	81	0	139	31	20	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93493704--93493876	46	3.7	46	75	13	183	23	20	26	29	1.99
93493701--93493871	93	1.8	93	92	0	288	22	21	27	28	1.99
93495877--93496044	46	3.7	46	77	12	191	22	19	27	29	1.98
93496272--93496309	19	2.0	20	85	15	53	36	0	23	39	1.55
93503706--93503877	46	3.7	46	80	14	219	20	21	28	29	1.98
93503703--93503872	92	1.8	92	96	0	313	20	21	29	28	1.98
93511926--93512008	29	2.9	29	98	0	157	28	14	30	26	1.95
93511927--93512021	29	3.2	29	92	3	127	31	15	28	24	1.96
93511922--93512058	60	2.3	58	80	6	143	27	15	32	24	1.95
93514388--93514556	46	3.7	46	77	15	195	21	20	28	28	1.98
93514385--93514555	93	1.8	93	94	2	308	21	21	28	28	1.98
93520976--93521028	26	2.0	26	100	0	106	22	11	18	47	1.81
93525802--93525841	21	2.0	20	85	14	55	25	37	22	15	1.93
93531066--93531111	22	2.1	22	84	4	58	15	32	28	23	1.95
93542663--93542830	40	4.2	40	76	1	149	23	27	22	26	2.00
93542679--93542828	80	1.9	80	83	5	196	22	27	24	26	1.99
93547934--93547982	17	2.8	18	74	22	50	24	18	22	34	1.96
93548803--93548969	40	4.2	40	79	6	169	25	21	27	25	1.99
93556832--93556943	39	2.8	40	82	8	138	24	24	27	24	2.00
93556831--93556959	40	3.3	39	76	13	138	24	24	26	25	2.00
93559098--93559146	25	2.0	25	87	0	71	32	24	16	26	1.96
93559188--93559226	20	2.0	20	100	0	78	35	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93559276--93559393	23	5.0	24	89	9	172	27	21	22	27	1.99
93559584--93559647	31	2.1	31	93	0	110	37	15	23	23	1.93
93567192--93567230	20	2.0	20	100	0	78	35	12	20	30	1.90
93567282--93567398	23	4.9	24	90	8	170	26	21	23	28	1.99
93567593--93567656	31	2.1	31	87	0	92	39	14	21	25	1.91
93598465--93598706	49	5.0	49	74	7	213	30	25	18	25	1.98
93599028--93599094	35	1.9	35	93	0	116	50	13	1	34	1.51
93599040--93599097	19	3.2	19	68	22	61	51	10	1	36	1.46
93604685--93604766	37	2.2	37	91	2	121	29	18	25	26	1.98
93604749--93604891	48	3.0	47	83	4	171	28	19	22	29	1.98
93616250--93616283	18	1.9	18	88	5	52	29	17	11	41	1.85
93617516--93617635	28	4.2	28	77	5	116	23	30	15	30	1.95
93624492--93624516	7	3.6	7	100	0	50	28	0	28	44	1.55
93626529--93626563	17	2.2	17	90	10	56	68	0	0	31	0.90
93628234--93628324	29	3.1	29	95	1	164	47	13	9	29	1.75
93631720--93631798	14	5.6	14	77	5	79	36	40	1	21	1.62
93631683--93631802	7	16.9	7	74	10	64	37	40	1	20	1.63
93631778--93631818	20	2.0	21	85	4	57	41	34	0	24	1.55
93631856--93631902	14	3.4	14	81	0	58	46	27	0	25	1.53
93632074--93632464	123	3.2	122	82	2	451	22	19	22	35	1.96
93632074--93632460	41	9.4	41	80	2	375	21	19	22	35	1.96
93632330--93632488	41	3.9	40	81	4	165	24	22	16	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93637897--93637999	29	3.6	28	76	7	100	29	33	15	21	1.94
93639724--93639788	22	3.0	22	75	8	69	30	21	26	21	1.98
93639935--93640052	41	2.9	41	90	0	191	28	31	18	21	1.97
93640310--93640713	27	15.0	27	78	6	248	32	9	18	39	1.83
93640697--93640777	26	3.1	26	80	3	99	29	20	18	30	1.97
93643812--93643983	46	3.7	46	75	13	183	30	27	19	22	1.98
93643817--93643984	93	1.8	92	93	1	291	30	28	19	22	1.97
93647071--93647248	6	28.8	6	74	17	143	49	14	17	18	1.80
93647059--93647138	18	4.4	18	70	9	72	53	12	15	18	1.72
93647071--93647248	25	7.2	24	79	11	143	49	14	17	18	1.80
93647071--93647198	37	3.5	37	80	6	145	50	15	17	17	1.79
93647144--93647219	37	2.1	37	92	0	125	47	17	18	17	1.83
93647082--93647247	62	2.7	62	90	1	253	49	15	17	18	1.80
93647071--93647219	19	7.7	19	74	18	121	49	15	17	17	1.80
93647367--93647426	27	2.3	26	85	2	75	35	20	23	21	1.96
93647394--93647535	67	2.1	67	85	5	185	30	21	28	19	1.97
93647465--93647516	27	2.0	26	84	3	68	34	21	26	17	1.95
93647757--93648017	27	9.7	27	84	4	267	25	22	16	34	1.95
93647753--93648017	81	3.3	80	87	2	345	25	22	16	35	1.95
93648020--93648176	27	5.8	27	87	1	208	40	9	21	28	1.85
93648009--93648190	81	2.2	81	82	1	240	37	8	21	31	1.85
93648171--93648404	27	8.7	26	79	5	207	30	8	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93648236--93648404	27	6.3	27	86	0	230	31	7	19	41	1.80
93649781--93649856	27	2.8	27	85	0	98	35	18	19	26	1.95
93649843--93650187	27	12.7	27	78	4	140	40	18	9	31	1.83
93649843--93650187	54	6.4	54	77	4	253	40	18	9	31	1.83
93649863--93650090	81	2.8	81	81	0	267	44	18	6	30	1.75
93649843--93650126	27	10.5	26	78	9	141	44	18	7	30	1.77
93658256--93658609	131	2.7	131	82	3	408	31	18	12	37	1.88
93673507--93673606	28	3.5	28	86	6	112	30	14	26	30	1.94
93676808--93676903	43	2.2	43	86	0	129	28	30	17	23	1.97
93676858--93676944	44	2.0	46	84	6	117	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433