genome.fa.s6.2.7.7.80.10.50.1000.373.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  373  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116928081--116928328	40	6.2	39	88	2	302	26	27	22	23	1.99
116928081--116928328	80	3.1	80	93	1	408	26	27	22	23	1.99
116928081--116928328	120	2.1	120	88	3	365	26	27	22	23	1.99
116928285--116928510	124	1.8	125	84	0	310	32	24	11	31	1.90
116937738--116937819	18	4.7	18	89	4	132	37	14	9	37	1.79
116937738--116937819	35	2.3	35	100	0	164	37	14	9	37	1.79
116944980--116945045	13	5.1	13	79	0	69	40	6	16	36	1.73
116944985--116945045	26	2.3	26	82	0	86	40	6	16	36	1.74
116946984--116947022	18	2.1	19	85	9	53	17	17	25	38	1.92
116952199--116952226	2	14.0	2	100	0	56	50	0	0	50	1.00
116967094--116967145	6	8.7	6	100	0	104	65	0	0	34	0.93
116967262--116967318	22	2.6	21	81	13	62	28	7	1	63	1.30
116970169--116970225	9	5.9	9	73	15	51	35	8	21	35	1.84
116970167--116970237	20	3.5	20	94	0	124	35	11	21	32	1.89
116970178--116970232	11	5.4	11	70	16	55	36	12	20	30	1.90
116970284--116970473	23	8.1	23	93	2	308	27	22	21	27	1.99
116970282--116970475	47	4.1	47	91	2	327	28	22	21	27	1.99
116971478--116971517	20	2.0	21	85	14	57	7	2	40	50	1.44
116975482--116975519	2	19.0	2	88	0	58	50	2	2	44	1.30
116975684--116975714	2	15.5	2	100	0	62	51	0	0	48	1.00
116976894--116977048	83	1.9	82	85	2	213	29	14	26	29	1.95
116978410--116978438	14	2.0	15	93	6	51	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116979596--116979710	41	2.7	43	75	16	123	29	18	25	26	1.98
116982144--116982482	27	12.6	27	84	3	423	28	22	9	40	1.84
116983716--116983762	24	2.0	24	86	0	67	31	25	17	25	1.97
116983801--116983893	9	9.9	9	71	17	73	35	8	20	35	1.83
116983801--116983832	16	2.0	16	93	0	55	37	3	18	40	1.67
116983817--116983905	20	4.4	20	94	0	151	34	11	21	32	1.89
116983826--116983900	11	7.4	11	71	17	72	36	12	20	32	1.89
116983799--116983905	40	2.8	40	92	5	177	35	10	20	33	1.87
116983950--116984116	24	7.0	24	87	4	223	29	23	20	26	1.99
116983950--116984117	47	3.5	48	87	4	225	29	23	20	26	1.99
116983950--116984116	71	2.3	71	90	3	255	29	23	20	26	1.99
116987259--116987552	160	1.8	161	88	2	457	27	22	8	40	1.84
116987215--116987552	27	12.6	27	86	3	441	28	22	9	39	1.85
116987263--116987596	81	4.1	81	83	3	244	28	23	8	39	1.85
116988785--116988831	24	2.0	24	86	0	67	31	25	17	25	1.97
116988870--116988926	9	5.9	9	73	15	51	35	8	21	35	1.84
116988868--116988938	20	3.5	20	94	0	124	35	11	21	32	1.89
116988879--116988933	11	5.4	11	70	16	55	36	12	20	30	1.90
116988983--116989149	24	7.0	24	88	4	232	28	23	21	26	1.99
116988983--116989150	47	3.5	48	88	4	234	29	23	21	26	1.99
116988983--116989149	71	2.3	71	91	3	264	28	23	21	26	1.99
116992485--116992656	93	1.8	93	96	0	317	27	30	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116992477--116992652	46	3.8	46	81	10	232	28	29	21	20	1.98
116995029--116995367	27	12.6	27	87	1	439	28	22	9	40	1.84
116995050--116995411	81	4.5	81	83	1	235	28	23	9	39	1.85
116996603--116996650	25	2.0	24	83	4	60	31	25	18	25	1.98
116996689--116996745	9	5.9	9	73	15	51	35	8	21	35	1.84
116996687--116996757	20	3.5	20	94	0	124	35	11	21	32	1.89
116996698--116996752	11	5.4	11	70	16	55	36	12	20	30	1.90
116996804--116996970	23	7.1	23	92	2	262	28	22	20	27	1.99
116996803--116996977	24	7.4	23	91	3	260	29	22	21	26	1.99
116996802--116996970	47	3.6	47	91	3	277	28	23	20	27	1.99
116999795--116999860	33	2.0	33	90	0	105	27	13	19	39	1.89
117002242--117002382	72	2.0	72	91	2	230	20	24	30	24	1.99
117006941--117006965	2	12.5	2	100	0	50	48	0	0	52	1.00
117009527--117009573	16	3.1	15	79	11	51	72	4	19	4	1.18
117012844--117013013	83	2.1	83	84	2	218	27	14	28	30	1.95
117014276--117014432	43	3.7	43	80	6	174	27	14	26	31	1.95
117021403--117021935	266	2.0	267	97	0	1005	35	13	14	36	1.86
117022274--117023190	305	3.0	303	94	1	1579	32	15	9	41	1.80
117034498--117034686	50	3.8	49	81	4	193	30	24	17	27	1.97
117037953--117038014	2	31.0	2	81	12	65	43	1	4	50	1.33
117038265--117038314	20	2.5	20	83	0	64	8	32	24	36	1.84
117039585--117039641	29	2.0	29	92	0	96	38	26	14	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117041452--117041571	29	4.2	29	78	6	111	38	16	17	27	1.91
117041446--117041643	58	3.4	57	76	9	161	36	19	16	27	1.93
117041470--117041644	29	6.0	29	77	7	126	35	19	16	29	1.93
117041446--117041649	59	3.5	59	76	9	170	36	19	16	28	1.93
117045186--117045295	43	2.6	43	88	0	166	32	31	24	10	1.90
117051096--117051142	22	2.2	21	84	3	58	36	21	8	34	1.84
117051115--117051165	19	2.9	16	78	18	57	35	17	9	37	1.83
117051113--117051155	19	2.1	21	91	8	72	34	18	9	37	1.83
117054374--117054466	46	2.0	46	95	0	168	44	13	10	31	1.79
117066278--117066368	24	3.7	25	78	7	89	27	20	17	34	1.95
117071516--117071560	23	2.0	23	86	0	63	11	15	24	48	1.77
117081138--117081191	23	2.3	23	100	0	108	55	14	11	18	1.68
117082040--117082083	19	2.2	20	84	4	54	34	25	18	22	1.96
117084540--117084578	19	2.1	19	95	0	69	46	15	12	25	1.81
117089169--117089335	40	4.2	40	79	6	169	26	22	26	24	2.00
117097169--117097310	40	3.5	40	83	1	124	27	23	26	22	1.99
117097208--117097336	40	3.2	39	84	6	152	24	22	27	25	2.00
117098552--117098783	27	8.7	26	84	5	218	40	21	7	30	1.81
117098534--117098783	53	4.7	53	82	4	229	40	20	8	31	1.81
117098552--117098728	27	6.7	27	87	4	236	41	20	6	31	1.78
117098552--117098963	54	7.7	54	83	6	155	34	21	8	34	1.85
117098778--117099150	27	13.8	27	86	3	466	28	22	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117100385--117100432	25	1.9	25	86	0	69	33	25	16	25	1.96
117100476--117100534	20	3.0	20	92	0	100	35	11	20	32	1.89
117100585--117100703	24	5.0	24	88	5	170	28	21	22	26	1.99
117100585--117100703	47	2.5	48	89	5	170	28	21	22	26	1.99
117100895--117100958	31	2.1	31	96	0	119	39	15	21	23	1.92
117103972--117104035	31	2.1	31	90	0	101	25	23	15	35	1.94
117104229--117104418	24	8.0	24	90	4	278	26	21	23	28	1.99
117104228--117104419	47	4.0	48	90	4	291	26	21	22	29	1.99
117104229--117104419	71	2.7	72	89	4	289	26	21	23	29	1.99
117104477--117104533	9	5.9	9	73	15	51	35	21	8	35	1.84
117104473--117104535	20	3.2	20	95	0	117	31	19	12	36	1.89
117104572--117104619	25	1.9	25	82	0	60	25	14	25	35	1.94
117105862--117106199	27	12.6	27	85	5	425	39	9	23	27	1.85
117105871--117106232	79	4.5	82	84	5	303	38	9	24	27	1.86
117109049--117109112	31	2.1	31	90	0	101	25	23	15	35	1.94
117109306--117109495	24	8.0	24	90	4	278	26	21	23	28	1.99
117109305--117109496	47	4.0	48	90	4	291	26	21	22	29	1.99
117109306--117109496	71	2.7	72	89	4	289	26	21	23	29	1.99
117109553--117109609	9	5.9	9	73	15	51	35	21	8	35	1.84
117109549--117109611	20	3.2	20	95	0	117	31	19	12	36	1.89
117109648--117109695	25	1.9	25	82	0	60	25	14	25	35	1.94
117110117--117110144	8	3.5	8	100	0	56	14	21	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117110936--117111276	27	12.6	27	83	7	379	40	8	22	28	1.84
117115536--117115706	22	7.3	23	74	15	131	23	20	19	36	1.95
117115546--117115653	24	4.5	24	77	13	98	23	18	20	37	1.94
117115584--117115696	44	2.5	44	87	4	156	21	18	21	38	1.93
117119773--117119922	42	3.5	42	86	3	194	25	18	30	26	1.98
117120755--117120783	13	2.1	14	93	6	51	55	10	0	34	1.34
117125889--117126091	9	22.7	9	73	11	141	36	0	16	45	1.54
117125911--117126104	36	4.9	39	79	15	202	37	1	15	45	1.53
117125960--117126091	54	2.4	54	84	3	167	35	0	15	47	1.52
117130448--117130555	26	4.2	26	93	0	189	36	24	7	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433