genome.fa.s6.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  138  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42507764--42507960	70	2.8	70	90	4	249	20	28	17	33	1.95
42515338--42515500	70	2.3	71	98	1	319	19	28	17	34	1.94
42515338--42515534	70	2.8	70	91	4	267	20	28	17	33	1.95
42524229--42524400	49	3.5	48	76	5	159	27	20	27	23	1.99
42525563--42525602	20	2.0	20	85	14	55	12	37	27	22	1.90
42527553--42527677	39	3.2	39	81	7	139	25	20	28	26	1.99
42529464--42529503	21	2.0	19	85	9	53	42	20	2	35	1.65
42539162--42539206	23	2.0	22	87	12	65	22	40	8	28	1.84
42541404--42541671	39	6.8	40	89	3	375	25	24	27	22	2.00
42541404--42541671	79	3.4	78	89	5	355	25	24	27	22	2.00
42541401--42541683	118	2.4	118	83	10	391	25	24	27	22	2.00
42546288--42546439	39	3.9	39	92	0	241	23	21	31	23	1.98
42546295--42546468	78	2.2	78	85	3	224	23	22	32	21	1.98
42554269--42554418	39	3.9	39	92	2	241	24	22	32	22	1.98
42559026--42559099	29	2.6	29	95	0	139	27	31	14	27	1.95
42558967--42559099	58	2.3	58	80	2	133	24	33	17	24	1.96
42571016--42571261	132	1.9	132	89	1	386	33	17	19	30	1.94
42577580--42577618	6	6.5	6	90	0	60	82	0	5	12	0.83
42584146--42584190	22	2.1	22	83	4	56	53	17	4	24	1.62
42589448--42589631	67	2.8	64	77	8	194	28	16	30	23	1.96
42590714--42590746	2	16.5	2	100	0	66	48	0	0	51	1.00
42596803--42596930	46	2.7	47	81	13	158	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42604369--42604592	47	4.8	47	85	10	225	21	20	29	29	1.98
42604367--42604538	47	3.7	47	89	8	246	22	20	29	28	1.98
42607925--42607999	29	2.6	29	85	2	89	26	17	30	25	1.97
42607933--42608043	29	3.9	29	77	5	100	27	16	29	26	1.97
42614032--42614080	8	6.1	8	76	9	55	40	22	10	26	1.86
42615303--42615353	24	2.1	24	92	0	84	54	17	17	9	1.69
42615577--42615687	58	1.9	57	87	1	159	26	15	30	27	1.96
42615564--42615676	29	4.0	29	85	6	142	26	15	30	28	1.96
42621772--42621993	46	4.8	46	81	9	254	29	28	19	22	1.98
42627188--42627324	40	3.5	40	89	3	215	24	29	23	22	1.99
42629678--42629777	39	2.6	38	80	4	119	26	23	27	24	2.00
42629626--42629810	79	2.3	82	82	9	222	24	24	27	24	2.00
42629679--42629818	40	3.5	40	80	6	142	25	25	27	22	2.00
42629678--42629843	79	2.1	79	79	4	183	25	23	26	24	2.00
42633871--42634012	40	3.6	39	81	3	142	23	28	22	25	1.99
42641727--42641838	40	2.8	40	88	0	161	21	28	23	26	1.99
42649399--42649575	40	4.4	40	93	2	286	24	30	23	22	1.99
42652340--42652379	21	2.0	20	85	5	53	22	27	37	12	1.90
42654564--42654590	13	2.1	13	100	0	54	14	37	33	14	1.88
42655045--42655213	48	3.6	47	81	6	207	24	30	18	26	1.98
42661515--42661943	48	8.9	48	97	0	804	33	6	29	31	1.82
42662080--42662219	37	3.8	37	96	0	253	22	20	32	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42664747--42664786	21	2.0	20	90	5	62	20	27	40	12	1.88
42666064--42666277	93	2.3	94	83	5	256	22	28	21	28	1.99
42666107--42666274	46	3.6	46	79	7	180	23	27	20	29	1.99
42672061--42672275	94	2.3	90	80	6	236	27	19	29	23	1.98
42672150--42672312	46	3.6	44	80	8	159	23	19	30	26	1.98
42672150--42672271	46	2.7	44	82	7	165	22	18	31	27	1.97
42677374--42677422	22	2.1	24	88	7	75	30	48	4	16	1.64
42677565--42677695	65	2.0	65	96	0	244	41	16	15	25	1.88
42677699--42677754	26	2.1	26	83	3	67	26	17	19	35	1.94
42682722--42682766	21	2.1	21	83	0	54	44	31	6	17	1.75
42689312--42689342	12	2.6	12	94	0	53	25	16	12	45	1.83
42692883--42693360	215	2.2	215	85	2	636	44	10	14	30	1.78
42694475--42694530	28	1.9	29	89	7	87	21	41	17	19	1.91
42695520--42695676	56	2.8	54	81	5	172	28	33	17	19	1.95
42696028--42696085	23	2.5	23	91	0	89	17	22	15	44	1.86
42697544--42697584	18	2.3	19	79	12	50	43	9	0	46	1.36
42698136--42698171	8	4.5	8	92	0	63	66	0	0	33	0.92
42701194--42701415	105	2.1	105	87	3	313	30	16	14	37	1.89
42701579--42701925	106	3.3	106	81	1	304	31	15	14	38	1.87
42703388--42703489	17	5.7	17	70	13	64	63	1	3	30	1.23
42703396--42703475	25	3.1	25	72	19	74	63	2	3	30	1.25
42703813--42703864	24	2.1	24	82	10	61	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42703870--42703934	30	2.3	28	82	10	80	35	1	3	60	1.22
42703950--42704001	21	2.5	21	87	6	70	25	1	0	73	0.94
42703950--42704015	21	3.3	19	80	14	62	24	3	0	72	0.98
42705330--42705437	55	2.0	55	98	0	207	46	12	18	23	1.82
42705989--42706018	11	2.7	11	100	0	60	10	6	0	83	0.81
42707620--42707685	6	10.8	6	76	15	55	43	15	19	21	1.87
42707845--42707946	27	3.8	26	87	5	123	36	21	24	17	1.95
42708596--42708836	27	9.0	27	86	2	326	24	21	20	34	1.97
42708596--42708839	53	4.6	53	85	3	328	25	20	20	34	1.97
42708598--42708839	80	3.0	80	84	3	317	25	21	19	34	1.96
42708596--42708839	107	2.3	107	89	2	366	25	20	20	34	1.97
42708622--42708868	80	3.1	80	78	6	216	25	19	19	35	1.95
42708839--42709005	27	6.2	27	83	0	199	30	7	19	41	1.80
42708880--42709037	27	5.9	27	74	10	101	31	6	21	41	1.78
42708846--42709005	81	2.0	81	86	4	225	31	7	20	40	1.80
42708863--42709032	81	2.1	81	83	6	220	31	7	20	40	1.80
42709034--42709167	27	5.0	26	86	5	169	41	9	19	29	1.83
42709025--42709167	54	2.6	54	86	0	205	41	9	18	30	1.82
42709182--42709265	27	3.2	26	78	10	89	29	7	21	41	1.79
42723897--42724060	40	4.1	40	78	6	170	24	21	28	25	1.99
42725832--42726029	38	5.2	38	86	3	229	21	20	25	32	1.98
42725832--42726030	76	2.6	76	86	3	256	21	20	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42730026--42730064	2	19.5	2	100	0	78	51	0	0	48	1.00
42731598--42731678	23	3.5	24	73	17	80	37	1	9	51	1.43
42731604--42731701	47	2.1	48	98	1	189	37	2	11	48	1.50
42732003--42732089	38	2.3	38	82	5	106	25	25	24	25	2.00
42740578--42740781	40	5.1	40	88	3	252	23	25	27	24	2.00
42742231--42742265	14	2.8	12	91	8	52	77	11	8	2	1.10
42745147--42745959	46	17.3	46	89	3	1189	33	6	29	30	1.83
42745147--42745959	94	8.7	92	92	2	1207	33	6	29	30	1.83
42745939--42745981	20	2.0	20	86	8	59	34	0	30	34	1.58
42745959--42746157	48	4.1	48	97	0	371	34	6	28	30	1.81
42746298--42746398	36	2.8	37	89	4	152	24	18	31	24	1.98
42747669--42747947	40	7.0	40	95	1	490	20	22	30	26	1.98
42747669--42747947	79	3.5	80	94	1	490	20	22	30	26	1.98
42747669--42747947	119	2.3	119	95	1	488	20	22	30	26	1.98
42748111--42748160	24	2.0	24	81	11	57	36	14	28	22	1.92
42751155--42752188	48	21.9	48	90	2	1630	33	6	28	31	1.82
42751155--42752188	94	10.9	95	94	1	1588	33	6	28	31	1.82
42751148--42752194	236	4.4	236	97	0	1925	33	6	28	31	1.82
42752329--42752431	37	2.8	37	93	0	179	23	20	31	25	1.98
42757420--42757451	12	2.7	12	100	0	64	43	9	15	31	1.78
42762761--42762923	39	4.2	39	91	0	254	22	20	32	24	1.98
42762761--42762954	39	4.9	39	87	0	244	22	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42764875--42764993	44	2.6	46	89	4	170	26	26	16	29	1.97
42773031--42773083	20	2.7	20	86	13	74	26	5	0	67	1.12
42777258--42777289	16	1.9	16	93	6	55	81	0	0	18	0.70
42786570--42786747	84	2.1	85	88	1	259	32	19	16	31	1.94
42786734--42786761	14	2.0	14	100	0	56	28	28	14	28	1.95
42786649--42786845	99	2.0	100	83	6	249	34	22	13	29	1.92
42787352--42787545	29	6.8	29	76	10	150	57	4	12	25	1.54
42787352--42787545	57	3.4	57	75	13	148	57	4	12	25	1.54
42789545--42789667	46	2.6	46	84	7	142	23	30	17	28	1.97
42791126--42791225	50	2.0	50	100	0	200	50	16	6	28	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433