Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  132  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40693808--40693840
15
2.3
15
94
5
59
0
9
0
90
0.44
40693808--40693841
7
4.5
8
89
10
54
0
8
0
91
0.43
40695499--40695586
31
2.9
31
75
6
83
44
10
6
38
1.65
40697806--40697836
2
16.0
2
93
6
55
51
0
0
48
1.00
40698838--40698936
29
3.3
31
77
5
80
44
9
17
29
1.79
40704633--40704674
20
2.1
20
100
0
84
59
0
9
30
1.29
40704639--40704685
20
2.3
20
88
3
67
63
2
4
29
1.25
40718520--40718733
89
2.4
89
80
0
248
34
17
22
25
1.96
40720116--40720171
6
9.0
6
84
7
67
76
0
1
21
0.87
40720116--40720164
13
3.8
13
83
5
64
77
0
2
20
0.87
40720116--40720179
19
3.3
19
78
6
67
76
1
1
20
0.95
40720116--40720171
25
2.2
24
84
9
76
76
0
1
21
0.87
40722248--40722442
89
2.2
88
82
1
219
34
17
24
23
1.96
40723924--40723955
16
2.0
16
100
0
64
43
6
18
31
1.75
40728719--40728788
5
14.0
5
76
11
63
62
1
0
35
1.04
40733174--40733212
17
2.3
17
86
8
53
43
15
17
23
1.87
40738327--40738417
18
4.9
18
76
17
96
56
9
14
19
1.66
40738305--40738431
57
2.2
58
95
2
229
50
14
14
21
1.77
40741658--40741701
10
4.0
12
80
13
51
56
6
0
36
1.26
40741649--40741701
22
2.5
22
87
3
72
54
7
0
37
1.29
40746804--40746964
29
5.6
29
86
3
191
26
16
31
26
1.96
40746804--40746963
87
1.8
87
83
2
214
26
16
30
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40754561--40754721
29
5.6
29
89
1
216
24
16
32
26
1.96
40755166--40755224
21
2.8
22
85
7
70
23
0
6
69
1.12
40755195--40755254
26
2.4
24
83
8
75
28
0
3
68
1.05
40762464--40762500
2
18.5
2
88
0
56
45
0
5
48
1.25
40762464--40762500
12
3.1
12
96
0
65
45
0
5
48
1.25
40769651--40769720
35
2.0
35
100
0
140
48
5
14
31
1.67
40770042--40770074
16
2.1
16
100
0
66
30
12
12
45
1.78
40780283--40780342
30
2.0
30
96
0
111
25
31
16
26
1.96
40781940--40781980
21
2.0
21
85
0
55
34
0
21
43
1.53
40782459--40782513
25
2.1
25
83
6
65
21
23
20
34
1.97
40782477--40782619
24
5.8
24
76
9
103
16
26
22
34
1.95
40782540--40782652
25
4.6
25
75
15
92
17
23
23
34
1.96
40782540--40782652
50
2.3
49
77
7
122
17
23
23
34
1.96
40786989--40787111
43
2.9
42
82
9
142
24
17
28
30
1.97
40787992--40788033
21
2.0
21
100
0
84
28
9
9
52
1.65
40789937--40790087
40
3.8
40
77
13
134
27
23
26
22
2.00
40789973--40790103
40
3.3
40
79
2
156
25
23
27
23
2.00
40797982--40798112
40
3.3
40
78
2
147
25
24
27
22
2.00
40805764--40805906
43
3.3
43
71
14
125
27
18
25
29
1.98
40810697--40810755
28
2.2
25
79
8
64
25
1
3
69
1.13
40817251--40817275
2
12.5
2
100
0
50
48
0
0
52
1.00
40818766--40818804
4
9.5
4
94
5
69
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40818760--40818804
21
2.1
22
95
4
83
22
0
2
75
0.91
40818826--40818899
34
2.1
38
87
10
111
43
1
0
55
1.08
40819496--40819540
2
22.5
2
100
0
90
48
0
0
51
1.00
40820014--40820071
21
2.7
24
77
17
65
34
0
3
62
1.12
40820344--40820410
18
3.8
17
74
5
62
52
1
4
41
1.31
40820396--40820444
14
3.6
13
78
8
53
61
2
0
36
1.08
40820879--40820963
40
2.1
41
86
2
118
37
7
3
51
1.46
40820888--40820977
40
2.2
40
80
3
101
40
6
3
50
1.45
40821026--40821178
71
2.1
72
92
2
254
50
3
3
41
1.39
40821269--40821306
17
2.2
17
90
0
58
57
0
2
39
1.12
40824411--40824439
13
2.1
14
93
6
51
51
0
3
44
1.18
40824889--40824939
23
2.2
23
82
6
59
43
5
11
39
1.66
40825426--40825473
15
3.3
15
82
2
62
37
2
12
47
1.53
40825671--40825711
18
2.2
20
86
8
59
39
0
24
36
1.56
40825970--40826012
23
2.0
23
86
9
63
11
4
41
41
1.62
40826109--40826149
19
2.2
19
87
12
59
46
0
24
29
1.53
40827780--40827820
22
1.9
22
90
5
66
48
2
0
48
1.14
40827781--40827826
22
2.2
22
84
7
60
54
2
0
43
1.12
40827990--40828070
32
2.5
32
81
15
96
40
0
3
55
1.17
40828009--40828117
20
5.7
20
68
24
65
39
0
1
58
1.09
40827982--40828066
23
3.9
22
75
15
79
42
0
4
52
1.22
40828030--40828116
22
4.1
22
76
15
69
37
0
2
59
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40828011--40828070
33
1.9
32
86
10
88
40
0
3
56
1.16
40828060--40828130
21
3.3
22
76
13
67
43
0
0
56
0.99
40828088--40828148
23
2.7
21
78
16
59
49
0
0
50
1.00
40828181--40828243
21
2.8
22
79
18
67
38
1
3
57
1.24
40828212--40828236
13
1.9
13
100
0
50
40
0
4
56
1.18
40828295--40828332
5
7.8
5
83
16
53
78
0
2
18
0.86
40828295--40828332
14
2.6
15
88
12
53
78
0
2
18
0.86
40828485--40828548
15
4.3
15
75
13
69
57
0
0
42
0.98
40828483--40828556
22
3.3
23
76
16
68
60
0
0
39
0.97
40828597--40828692
21
4.9
20
71
19
87
58
1
2
38
1.17
40828583--40828650
21
3.1
21
85
10
84
55
0
1
42
1.08
40828615--40828698
34
2.4
35
84
11
102
59
1
2
36
1.18
40828770--40828803
9
3.8
9
92
0
59
79
2
8
8
1.03
40828954--40829002
10
4.8
10
77
22
57
61
0
0
38
0.96
40829034--40829100
21
3.1
21
82
8
73
53
0
1
44
1.09
40829034--40829095
22
2.9
22
83
11
83
54
0
0
45
0.99
40829048--40829114
20
3.3
21
83
4
75
59
0
1
38
1.06
40832212--40832248
16
2.1
18
85
14
51
56
0
0
43
0.99
40837565--40837597
4
8.8
4
93
6
52
24
0
0
75
0.80
40837565--40837605
14
3.1
13
86
13
57
26
2
0
70
0.99
40838065--40838126
32
2.0
30
84
12
81
62
12
1
22
1.38
40838315--40838371
28
2.0
28
96
0
105
29
19
10
40
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40842984--40843086
29
3.6
28
80
5
116
29
33
16
21
1.95
40845677--40845720
6
7.3
6
82
10
54
45
0
34
20
1.51
40845934--40846147
76
2.9
74
77
11
206
42
7
5
44
1.57
40848615--40848649
18
1.9
18
88
0
52
34
28
2
34
1.72
40856106--40856144
20
2.0
20
85
10
53
28
5
17
48
1.68
40859134--40859196
33
2.0
30
82
14
74
22
9
11
57
1.62
40865181--40865215
14
2.5
14
95
0
61
40
8
22
28
1.84
40866238--40866298
29
2.1
29
93
0
104
44
24
9
21
1.82
40866550--40866602
26
2.0
26
85
7
72
20
16
22
39
1.92
40867854--40867972
12
9.9
12
66
10
64
21
37
5
34
1.78
40867857--40868002
24
6.0
24
91
4
231
21
38
4
35
1.75
40870911--40870938
14
2.0
14
100
0
56
42
21
7
28
1.79
40871495--40871544
6
8.5
6
84
2
66
50
0
48
2
1.12
40871714--40871740
14
1.9
14
100
0
54
37
14
18
29
1.91
40875710--40875769
30
2.0
30
96
0
111
30
28
6
35
1.83
40884421--40884536
33
3.6
32
77
5
108
28
25
15
30
1.96
40884448--40884626
98
1.8
98
82
0
232
31
22
12
33
1.91
40884418--40884576
66
2.4
66
80
3
178
28
22
15
33
1.94
40884520--40884626
33
3.3
33
85
5
128
30
21
10
37
1.87
40891888--40891981
40
2.4
40
80
7
104
17
12
34
36
1.87
40899923--40900040
29
4.2
29
76
16
122
30
13
24
31
1.94
40899876--40900040
84
2.0
84
85
2
224
32
14
23
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40901987--40902115
62
2.1
62
86
2
179
31
24
17
26
1.97
40905334--40905384
22
2.3
22
93
0
84
19
17
19
43
1.89
40909857--40909922
27
2.4
27
82
0
69
25
21
15
37
1.92
40914754--40915021
131
2.0
131
89
2
414
27
18
18
35
1.94
40926847--40926883
18
2.1
18
94
0
65
24
24
0
51
1.49
40933846--40933882
18
2.1
18
94
0
65
51
0
24
24
1.49
40933846--40933882
12
3.1
12
84
0
56
51
0
24
24
1.49
40943838--40943885
20
2.3
21
82
7
62
41
20
14
22
1.89
40946242--40946283
19
2.2
19
100
0
84
28
9
11
50
1.70
40946571--40946601
11
2.8
11
90
0
53
32
0
0
67
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433