Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  159  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49548654--49548718
28
2.3
28
89
0
94
30
6
26
36
1.81
49550526--49550555
2
15.0
2
100
0
60
50
0
0
50
1.00
49558411--49558484
37
2.0
37
100
0
148
24
37
13
24
1.91
49559521--49559546
5
5.2
5
100
0
52
38
0
0
61
0.96
49566433--49566576
39
3.7
40
84
0
175
23
22
29
23
1.99
49569550--49569634
43
2.0
43
95
0
152
27
23
8
41
1.83
49570836--49570865
6
5.2
6
92
8
53
53
16
16
13
1.73
49574435--49574523
44
2.0
44
100
0
178
31
6
13
48
1.68
49575402--49575431
11
2.7
11
100
0
60
26
0
0
73
0.84
49577399--49577470
33
2.2
33
85
5
92
33
18
22
26
1.96
49577327--49577588
103
2.6
102
83
3
303
32
15
24
27
1.95
49577750--49577775
2
13.0
2
100
0
52
50
0
0
50
1.00
49579949--49580052
25
4.2
25
79
7
95
23
21
22
33
1.97
49579946--49580061
50
2.3
50
81
8
137
24
21
22
31
1.98
49585770--49585833
32
2.0
32
100
0
128
25
21
25
28
1.99
49599218--49599525
46
6.7
44
80
9
296
22
29
20
27
1.98
49599218--49599525
91
3.3
89
90
5
422
22
29
20
27
1.98
49599121--49599480
137
2.6
140
80
10
380
22
29
20
27
1.99
49599850--49599907
30
1.9
30
96
0
107
27
22
15
34
1.94
49601392--49601621
108
2.1
109
85
1
318
23
23
28
23
2.00
49603230--49603355
9
13.3
9
67
14
58
42
0
1
54
1.15
49603229--49603301
20
3.8
18
76
15
74
39
1
1
57
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49603265--49603312
20
2.6
18
81
12
60
45
0
2
52
1.12
49603303--49603355
18
2.8
19
83
11
65
45
0
1
52
1.11
49603303--49603355
19
2.9
18
86
8
63
45
0
1
52
1.11
49603305--49603359
28
2.0
27
85
3
74
43
0
1
54
1.10
49603308--49603371
20
3.3
19
86
8
76
42
0
3
54
1.16
49603620--49603659
3
13.7
3
89
5
64
70
0
0
30
0.88
49614143--49614190
22
2.2
22
81
7
53
62
8
6
22
1.46
49614160--49614202
22
2.0
22
85
0
59
53
11
4
30
1.57
49615488--49615519
4
8.0
4
100
0
64
25
0
0
75
0.81
49616425--49616461
16
2.4
16
90
4
58
18
37
21
21
1.94
49616997--49617072
38
2.0
40
92
5
129
59
5
1
34
1.28
49618573--49618630
3
19.3
3
100
0
116
67
0
32
0
0.91
49621399--49621506
26
4.2
26
92
0
180
37
24
6
32
1.81
49621502--49621526
10
2.5
10
100
0
50
32
12
8
48
1.69
49622252--49622296
3
15.3
3
95
4
83
68
0
31
0
0.89
49622470--49622509
20
2.0
20
85
9
55
40
27
10
22
1.86
49624185--49624393
41
5.1
40
85
6
226
38
21
20
19
1.94
49624801--49624854
25
2.2
25
96
0
99
29
7
24
38
1.82
49625190--49625216
2
13.5
2
100
0
54
0
0
48
51
1.00
49625481--49625512
15
2.1
15
94
0
55
59
0
9
31
1.29
49630995--49631029
9
3.9
9
85
14
54
45
20
0
34
1.51
49632303--49632346
22
2.0
22
100
0
88
36
18
27
18
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49632404--49632477
35
2.1
35
94
0
130
35
12
20
32
1.89
49636522--49636569
21
2.3
21
96
0
87
22
16
58
2
1.49
49636862--49637063
43
4.7
43
79
6
223
30
19
19
30
1.97
49636913--49637074
86
1.9
86
88
5
247
27
20
20
30
1.98
49639603--49639672
33
2.1
33
97
0
131
57
7
10
25
1.57
49639856--49639910
21
2.6
21
80
5
58
63
3
1
30
1.22
49640289--49640351
19
3.2
19
75
24
60
65
1
1
31
1.12
49640343--49640396
21
2.6
20
80
11
56
61
0
7
31
1.24
49640478--49640522
2
23.5
2
82
8
58
57
0
0
42
0.98
49642101--49642604
205
2.5
205
92
0
855
29
21
18
30
1.97
49642758--49642932
44
4.0
43
71
10
129
28
24
17
30
1.97
49642656--49642932
132
2.1
132
91
0
437
27
24
18
29
1.98
49654521--49654590
33
2.1
33
97
0
131
57
7
10
25
1.57
49655692--49655735
19
2.4
19
85
7
56
50
0
9
40
1.34
49657525--49657593
28
2.5
28
90
2
113
43
26
10
20
1.83
49659956--49659999
19
2.4
19
85
7
56
50
0
9
40
1.34
49661790--49661858
28
2.5
28
90
2
113
43
26
10
20
1.83
49664436--49664522
14
6.1
14
69
15
70
29
10
26
33
1.90
49676817--49677216
97
4.1
98
74
18
297
31
9
13
45
1.76
49676870--49677272
49
8.3
49
91
1
607
32
10
12
44
1.76
49676870--49677272
97
4.1
97
90
1
603
32
10
12
44
1.76
49678384--49678418
14
2.5
14
95
0
61
40
5
20
34
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49680008--49680177
48
3.5
48
88
8
238
58
17
2
21
1.49
49681238--49681270
17
1.9
18
88
11
52
45
0
12
42
1.41
49683151--49683192
17
2.4
18
88
11
70
45
0
0
54
0.99
49687423--49687587
23
7.0
24
91
4
248
27
21
22
29
1.99
49687423--49687588
71
2.3
70
91
4
262
27
21
22
28
1.99
49687633--49687703
20
3.5
20
92
0
115
32
19
11
36
1.87
49687740--49687787
25
1.9
25
91
0
78
25
14
25
35
1.94
49692825--49692988
40
4.2
39
78
6
154
24
27
22
25
2.00
49692841--49692987
77
1.9
77
84
5
199
23
27
23
25
2.00
49700851--49700964
40
2.8
39
84
2
138
25
28
22
22
1.99
49702974--49703006
17
1.9
17
93
0
57
21
12
9
57
1.62
49704948--49705009
31
2.0
32
84
9
83
37
20
24
17
1.94
49705710--49706103
27
14.6
27
87
1
513
24
20
18
36
1.95
49705692--49706238
54
10.1
55
84
4
498
26
18
18
37
1.93
49706058--49706239
27
6.7
27
84
3
224
31
12
18
37
1.88
49706031--49706239
27
7.7
27
84
2
217
29
12
19
38
1.89
49708353--49708442
33
2.8
33
83
5
94
24
23
23
28
1.99
49708608--49708647
20
2.0
20
100
0
80
25
30
20
25
1.99
49713421--49713550
40
3.2
40
82
6
158
22
24
28
24
1.99
49716572--49716743
93
1.8
93
90
2
274
29
28
19
22
1.98
49716564--49716739
46
3.8
47
75
12
157
30
27
18
22
1.98
49720782--49720814
14
2.3
15
89
5
50
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49720872--49720936
34
1.9
34
90
6
105
52
6
9
32
1.58
49730147--49730176
12
2.5
12
94
0
51
26
30
33
10
1.89
49737303--49737350
10
4.6
10
87
10
60
58
4
0
37
1.18
49737308--49737351
22
2.0
22
95
0
79
59
2
0
38
1.10
49740975--49741032
29
2.0
29
86
3
80
48
13
5
32
1.65
49742118--49742153
17
2.1
17
89
0
54
27
33
11
27
1.91
49748447--49748539
42
2.2
42
90
0
141
29
23
18
29
1.98
49750125--49750350
40
5.7
40
85
4
237
26
25
20
28
1.99
49750153--49750344
80
2.4
79
86
8
264
26
23
19
30
1.98
49756423--49756463
2
21.5
2
90
9
68
48
0
0
51
1.00
49762292--49762347
25
2.2
24
79
14
60
62
1
26
8
1.35
49764265--49764394
40
3.2
40
84
4
174
22
24
29
23
1.99
49766081--49766124
22
2.0
22
81
0
52
56
4
0
38
1.20
49768281--49768311
15
2.1
15
93
0
53
25
19
29
25
1.99
49772668--49772933
46
5.7
46
75
13
258
22
20
27
29
1.99
49772665--49772884
47
4.7
47
77
14
233
23
20
27
28
1.99
49772665--49772929
93
2.8
93
93
1
442
23
20
27
28
1.99
49773158--49773195
19
2.0
20
85
15
53
36
0
23
39
1.55
49777485--49778136
328
2.0
328
98
0
1252
33
12
23
30
1.92
49780646--49780856
46
4.8
44
77
16
222
21
20
27
30
1.98
49780691--49780760
20
3.6
20
72
14
65
20
21
27
31
1.98
49781081--49781118
19
2.0
20
85
15
53
36
0
23
39
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49789113--49789165
23
2.3
22
78
9
61
62
7
15
15
1.53
49789438--49789564
3
42.3
3
100
0
254
66
0
33
0
0.92
49790208--49790232
12
2.1
12
100
0
50
56
16
0
28
1.41
49798935--49798980
22
2.1
21
84
4
56
23
8
10
56
1.61
49806692--49806729
19
2.0
19
85
10
51
60
2
0
36
1.11
49806757--49806843
41
2.1
41
80
4
95
45
6
3
43
1.47
49806964--49807025
31
2.0
32
87
6
92
43
11
0
45
1.40
49807594--49807627
10
3.4
10
83
0
50
67
2
2
26
1.19
49818299--49818363
25
2.6
26
80
4
80
29
13
10
46
1.77
49822324--49822393
27
2.6
27
95
2
122
30
27
14
28
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433