genome.fa.s6.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  185  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58099750--58099954	81	2.5	81	81	5	211	30	8	20	40	1.81
58099956--58100226	27	10.0	27	90	3	377	43	9	19	28	1.81
58100239--58100322	27	3.2	25	78	11	87	29	8	20	41	1.81
58103548--58103743	71	2.8	70	88	6	265	34	16	28	20	1.94
58103614--58103731	41	3.1	41	61	28	98	33	16	28	21	1.95
58103582--58103743	71	2.3	71	98	0	315	36	16	27	19	1.93
58105083--58105170	6	14.3	6	73	17	74	47	14	18	19	1.82
58105092--58105170	31	2.5	31	91	0	122	48	13	18	18	1.81
58105591--58105817	27	8.4	27	87	0	330	24	19	21	35	1.96
58105574--58105819	107	2.3	106	87	3	341	24	19	19	35	1.95
58105619--58105873	107	2.4	107	83	5	293	26	16	20	36	1.93
58105833--58106010	81	2.2	81	84	4	225	29	7	20	42	1.79
58105803--58105983	27	6.7	27	84	4	206	29	8	22	40	1.83
58106004--58106280	27	10.3	27	92	0	401	40	8	22	29	1.83
58106295--58106357	27	2.3	27	83	5	83	30	9	20	39	1.84
58106285--58106379	27	3.5	26	76	11	75	28	9	21	41	1.84
58114350--58114562	40	5.3	40	84	2	232	25	20	27	27	1.99
58127396--58127493	28	3.5	28	84	4	108	29	16	24	29	1.96
58130176--58130263	21	4.2	20	73	21	72	26	1	3	69	1.11
58132190--58132246	2	28.5	2	89	0	87	3	47	0	49	1.18
58134520--58134578	30	2.0	30	83	6	75	25	25	25	23	2.00
58138094--58138126	15	2.2	15	100	0	66	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58138386--58138426	20	2.0	20	100	0	82	36	24	9	29	1.87
58141362--58141395	6	5.7	6	100	0	68	85	0	0	14	0.60
58141518--58141615	19	5.2	19	91	7	155	38	9	16	35	1.80
58141508--58141593	36	2.4	35	85	14	115	38	10	15	36	1.81
58141524--58141595	36	2.0	36	100	0	144	38	11	13	36	1.81
58143166--58143325	29	5.5	30	88	8	213	26	25	14	33	1.94
58143166--58143325	59	2.8	57	88	4	214	26	25	14	33	1.94
58151210--58151369	29	5.5	30	88	8	213	26	25	14	33	1.94
58151210--58151369	59	2.8	57	88	4	214	26	25	14	33	1.94
58155558--58155599	14	2.9	14	77	16	50	2	19	2	76	1.01
58157590--58157628	18	2.2	18	86	9	53	23	7	2	66	1.30
58165855--58166028	46	3.8	45	78	13	192	21	20	28	29	1.98
58165851--58166023	93	1.9	93	93	0	301	21	20	29	28	1.98
58170516--58170598	40	2.1	40	84	2	105	18	22	30	28	1.97
58171253--58171277	2	12.5	2	100	0	50	48	0	0	52	1.00
58173824--58173849	13	2.0	13	100	0	52	38	7	15	38	1.76
58183067--58183193	22	5.4	23	77	10	105	30	16	25	27	1.97
58189243--58189303	30	2.0	30	100	0	122	36	3	9	50	1.52
58192433--58192764	50	6.6	50	83	2	396	25	16	26	31	1.96
58195855--58196041	50	3.8	49	78	7	180	27	27	18	26	1.98
58201223--58201416	51	3.9	48	81	8	219	27	27	18	25	1.98
58201232--58201420	101	1.9	99	87	4	281	28	29	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58208211--58208279	28	2.5	28	88	2	95	23	10	23	43	1.84
58210074--58210117	19	2.4	18	85	7	54	40	9	0	50	1.34
58212868--58212935	32	2.1	32	86	0	91	27	23	22	26	1.99
58212884--58212946	32	2.0	32	87	0	90	31	25	19	23	1.98
58221331--58221465	71	1.9	71	82	0	171	37	16	12	33	1.86
58223504--58223655	42	3.7	42	77	6	125	26	28	17	26	1.98
58228197--58228225	14	2.0	15	93	6	51	27	0	20	51	1.47
58228525--58228549	10	2.5	10	100	0	50	88	0	12	0	0.53
58229353--58229521	43	4.0	42	72	7	135	24	18	27	28	1.98
58231149--58231192	8	5.4	8	84	13	54	52	9	27	11	1.67
58231141--58231192	24	2.1	25	89	10	81	51	11	25	11	1.71
58243841--58243899	27	2.2	27	84	0	73	30	20	20	28	1.97
58243848--58243903	27	2.1	27	89	0	85	26	23	16	33	1.95
58255887--58256029	70	2.0	70	87	2	207	25	10	30	33	1.89
58257678--58257762	41	2.1	41	100	0	170	22	29	24	23	1.99
58258267--58258379	45	2.5	45	89	0	172	22	19	12	46	1.83
58258434--58258650	45	4.8	45	84	0	254	25	19	16	38	1.92
58263927--58264134	40	5.2	39	82	3	202	25	25	23	25	2.00
58263927--58264133	80	2.6	80	82	3	238	25	26	23	25	2.00
58266531--58266747	40	5.4	40	92	2	307	23	23	27	24	2.00
58274543--58274759	40	5.4	40	92	2	316	23	23	27	25	2.00
58276247--58276287	19	2.2	19	86	0	55	9	26	36	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58282965--58283128	47	3.5	46	83	9	199	28	17	31	23	1.96
58300122--58300376	48	5.3	48	78	5	219	23	28	18	29	1.98
58300122--58300376	96	2.7	95	80	7	250	23	28	18	29	1.98
58301694--58301857	40	4.1	40	88	1	231	29	28	20	21	1.98
58309728--58309983	40	6.5	40	90	4	360	25	28	22	23	1.99
58315122--58315240	45	2.6	45	84	2	132	18	22	15	42	1.88
58315120--58315261	45	3.2	45	81	6	128	18	21	16	42	1.88
58315221--58315419	45	4.4	45	81	4	125	23	19	16	41	1.89
58315252--58315417	89	1.9	90	87	1	244	24	18	16	39	1.91
58315252--58315421	45	3.8	45	85	1	216	24	19	17	39	1.92
58325257--58325444	40	4.7	40	89	3	290	25	27	22	24	2.00
58326625--58326651	14	1.9	14	100	0	54	0	22	0	77	0.76
58326572--58326699	53	2.5	51	91	5	211	17	22	9	50	1.74
58328243--58328328	43	2.0	43	95	0	154	26	29	20	23	1.99
58338114--58338199	43	2.0	43	90	0	136	27	30	18	23	1.98
58340444--58340478	17	2.1	17	100	0	70	11	11	25	51	1.71
58340444--58340476	9	3.8	9	92	8	59	12	12	21	54	1.69
58343691--58343858	40	4.2	40	87	2	223	23	21	28	26	1.99
58351848--58352028	40	4.5	40	84	1	220	23	22	27	26	1.99
58351844--58352048	80	2.6	80	80	7	245	23	20	26	28	1.99
58353727--58353828	29	3.5	29	87	0	141	27	15	34	22	1.95
58362518--58362548	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58369958--58369982	2	12.5	2	100	0	50	48	0	0	52	1.00
58376031--58376056	13	2.0	13	100	0	52	23	30	23	23	1.99
58393710--58393757	10	4.8	10	97	0	78	58	6	0	35	1.23
58399716--58399744	14	2.1	14	100	0	58	31	20	20	27	1.98
58404296--58404480	79	2.3	82	83	7	229	24	24	27	23	2.00
58404297--58404488	40	4.8	40	79	7	151	24	24	28	22	2.00
58404296--58404513	79	2.7	79	79	6	183	24	23	27	24	2.00
58412975--58413230	40	6.5	40	90	4	369	22	23	28	25	1.99
58412975--58413230	118	2.2	119	88	4	374	22	23	28	25	1.99
58420998--58421213	40	5.5	40	91	3	332	22	23	28	25	1.99
58425758--58425820	32	2.0	31	87	3	90	39	0	4	55	1.21
58425769--58425812	22	2.0	22	90	0	70	40	0	4	54	1.21
58425759--58425820	10	6.1	10	81	9	63	38	0	4	56	1.21
58431054--58431121	27	2.6	27	76	2	66	23	19	27	29	1.98
58434778--58434810	12	2.8	12	95	4	59	15	15	33	36	1.88
58437108--58437204	7	13.6	7	76	8	97	17	1	36	45	1.56
58437109--58437204	22	4.5	22	73	8	63	16	1	36	45	1.55
58437108--58437204	15	6.8	14	83	8	97	17	1	36	45	1.56
58440037--58440073	18	2.2	18	85	9	51	37	16	8	37	1.78
58442024--58442097	29	2.6	29	95	0	139	27	14	31	27	1.95
58442081--58442156	29	2.6	29	78	0	89	22	19	35	22	1.96
58442024--58442156	58	2.3	58	80	2	133	24	17	33	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58449900--58449973	29	2.6	29	95	0	139	27	14	31	27	1.95
58449957--58450032	29	2.6	29	78	0	89	22	19	35	22	1.96
58449900--58450032	58	2.3	58	80	2	133	24	17	33	24	1.96
58457779--58457852	29	2.6	29	95	0	139	27	14	31	27	1.95
58457836--58457911	29	2.6	29	78	0	89	22	19	35	22	1.96
58457779--58457911	58	2.3	58	80	2	133	24	17	33	24	1.96
58473003--58473144	40	3.5	40	83	1	124	27	23	26	22	1.99
58473042--58473170	40	3.2	39	84	6	152	24	22	27	25	2.00
58475436--58475647	27	7.9	28	75	9	167	30	10	21	37	1.87
58475435--58475647	54	4.0	54	77	8	197	30	10	21	37	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433