genome.fa.s6.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  155  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48390611--48390796	40	4.7	40	79	2	176	24	26	22	26	2.00
48390611--48390832	80	2.8	81	82	4	236	23	26	22	27	1.99
48394748--48394814	20	3.3	20	91	4	109	32	19	11	35	1.88
48394748--48394803	11	5.5	11	75	16	66	32	19	12	35	1.89
48401103--48401269	45	3.9	44	78	7	173	25	16	26	31	1.96
48404457--48404498	21	2.0	21	82	17	52	42	0	2	54	1.13
48408064--48408131	30	2.3	30	89	5	102	11	23	39	25	1.88
48413891--48413929	20	2.0	20	85	5	53	33	5	10	51	1.58
48416373--48416691	167	1.9	167	87	1	469	27	14	25	32	1.95
48416373--48416747	56	6.7	56	85	3	445	27	14	25	32	1.94
48421452--48421496	23	2.0	22	91	4	72	53	0	20	26	1.46
48422778--48422945	40	4.2	40	77	6	169	24	21	29	25	1.99
48430769--48430936	40	4.2	40	77	6	169	24	21	29	25	1.99
48438766--48438933	40	4.2	40	76	6	160	24	20	29	25	1.99
48444032--48444057	7	3.7	7	100	0	52	69	0	0	30	0.89
48449231--48449288	3	19.3	3	100	0	116	32	0	0	67	0.91
48452010--48452122	43	2.7	42	78	13	131	24	17	25	31	1.97
48457726--48457840	31	3.7	31	96	1	196	27	25	17	29	1.97
48457864--48457955	42	2.2	42	90	0	139	33	21	15	29	1.94
48458103--48458172	25	2.8	25	91	0	104	25	22	24	27	2.00
48458985--48459071	27	3.2	27	88	3	131	21	26	19	32	1.97
48459125--48459176	27	1.9	27	84	7	70	36	11	11	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48459233--48459412	27	6.7	26	80	5	189	30	10	18	40	1.84
48459131--48459323	101	1.9	101	80	5	228	31	9	18	40	1.82
48459233--48459412	54	3.4	53	82	4	218	30	10	18	40	1.84
48459233--48459412	80	2.2	81	83	2	229	30	10	18	40	1.84
48459233--48459480	27	9.2	27	83	3	178	34	9	19	37	1.84
48459337--48459575	54	4.4	54	81	1	158	35	8	20	34	1.83
48459378--48459574	81	2.4	81	81	0	241	37	8	20	33	1.82
48459403--48459558	27	5.8	27	91	0	213	39	8	22	29	1.83
48461775--48461925	42	3.5	43	82	8	157	24	19	28	27	1.99
48461821--48461933	43	2.7	42	77	14	115	25	21	26	26	1.99
48466121--48466252	59	2.3	58	97	1	246	37	14	24	24	1.92
48466091--48466252	88	1.8	89	90	1	263	35	14	24	25	1.93
48466121--48466252	29	4.5	29	97	1	246	37	14	24	24	1.92
48475061--48475089	13	2.2	13	100	0	58	31	0	13	55	1.39
48476757--48476795	3	13.0	3	100	0	78	33	0	0	66	0.92
48481722--48481784	32	1.9	33	84	9	85	61	9	3	25	1.41
48487274--48487452	40	4.5	40	82	6	161	25	25	21	27	2.00
48490990--48491015	13	2.0	13	100	0	52	46	15	7	30	1.74
48493985--48494151	46	3.6	45	77	11	176	27	19	28	24	1.98
48494174--48494301	49	2.6	49	81	2	150	28	21	27	23	1.99
48497851--48497916	29	2.3	29	91	0	105	30	18	21	30	1.97
48500928--48500985	20	2.8	21	87	10	84	48	3	12	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48505700--48505741	18	2.3	18	76	8	50	21	42	23	11	1.86
48527800--48527882	26	3.2	26	93	1	132	36	24	4	34	1.77
48531473--48531618	37	3.9	37	95	0	247	26	31	18	23	1.97
48531821--48532061	47	5.1	47	90	0	356	27	28	10	33	1.90
48531936--48532062	25	5.3	25	65	17	81	29	27	8	33	1.87
48537464--48537547	26	3.2	26	96	0	150	36	25	4	33	1.77
48539138--48539285	57	2.6	57	90	2	235	31	13	14	40	1.85
48541608--48541640	4	8.5	4	93	6	59	48	0	0	51	1.00
48541871--48541922	15	3.2	15	73	19	50	44	0	1	53	1.11
48542013--48542056	22	2.0	22	86	0	61	47	0	0	52	1.00
48542112--48542137	9	2.9	9	100	0	52	42	0	0	57	0.98
48546869--48546976	50	2.1	51	96	1	200	30	11	15	42	1.82
48548684--48548732	25	2.0	25	100	0	98	63	0	8	28	1.23
48551417--48551471	28	2.0	28	85	0	74	21	14	12	50	1.76
48551573--48551644	13	5.1	14	74	17	51	2	15	4	77	1.03
48554509--48554562	28	1.9	28	88	7	83	24	9	25	40	1.85
48554524--48554681	28	5.6	28	74	5	95	25	15	20	37	1.92
48554586--48554681	29	3.4	28	80	7	95	26	19	19	34	1.96
48565661--48565724	25	2.6	25	85	7	87	20	15	25	39	1.92
48567388--48569526	712	3.0	712	88	2	3187	32	21	14	30	1.94
48581517--48581591	31	2.5	31	80	6	91	58	4	1	36	1.25
48583373--48583401	15	1.9	15	100	0	58	27	0	17	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48592414--48592445	2	16.0	2	100	0	64	50	0	0	50	1.00
48593129--48593157	11	2.7	11	94	5	51	82	0	0	17	0.66
48600821--48600854	15	2.3	15	100	0	68	35	23	23	17	1.95
48603790--48603963	35	4.9	35	79	2	150	40	17	10	30	1.84
48603852--48603977	37	3.5	37	84	4	148	42	16	10	30	1.82
48611607--48611788	35	5.1	35	75	4	132	40	18	12	29	1.86
48613655--48613729	36	2.1	36	100	0	150	36	17	0	46	1.48
48613659--48613717	19	3.2	19	68	18	61	35	16	0	47	1.47
48615557--48615665	37	2.9	37	94	0	182	26	30	19	23	1.98
48615812--48616326	48	10.1	48	77	13	401	33	24	5	37	1.77
48615815--48616330	100	5.0	100	78	11	587	33	24	5	37	1.77
48616046--48616086	2	20.0	2	90	5	64	46	4	0	48	1.23
48615963--48616182	120	1.9	116	89	5	343	34	22	4	39	1.73
48616319--48616352	2	17.0	2	100	0	68	50	0	0	50	1.00
48616227--48616448	122	1.8	122	92	0	372	33	22	5	38	1.78
48616349--48616535	48	3.9	48	92	0	311	31	26	6	36	1.82
48616139--48616535	218	1.8	218	94	0	704	32	24	5	37	1.79
48615815--48616535	266	2.7	261	90	3	1104	33	24	5	37	1.78
48616179--48616496	170	1.9	170	91	0	528	33	23	5	37	1.78
48619999--48620345	40	8.7	40	90	0	505	26	29	21	23	1.99
48621599--48621741	36	3.9	37	94	1	236	25	30	19	24	1.98
48621599--48621741	73	2.0	73	91	2	234	25	30	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48621886--48622371	48	9.9	48	90	4	706	31	25	6	36	1.82
48621886--48622577	96	7.0	96	85	8	931	32	25	6	36	1.81
48622361--48622395	2	17.0	2	88	5	52	48	5	0	45	1.26
48622216--48622528	157	2.0	158	91	1	513	32	24	6	36	1.80
48622392--48622577	95	1.9	96	94	1	329	31	26	6	35	1.82
48622392--48622577	48	3.9	48	94	1	329	31	26	6	35	1.82
48626040--48626384	40	8.7	40	91	0	514	26	28	21	23	1.99
48627685--48627729	22	2.0	23	95	4	83	17	31	26	24	1.97
48627915--48628452	48	11.0	48	89	7	821	31	26	6	35	1.81
48628190--48628317	60	2.2	59	87	4	177	34	24	4	36	1.76
48628064--48628452	202	1.9	204	96	1	719	31	26	5	36	1.80
48627915--48628452	250	2.2	242	92	4	882	31	26	6	35	1.81
48631586--48631646	22	2.8	22	84	0	68	8	14	50	26	1.71
48631605--48631647	22	2.0	22	95	0	77	11	11	53	23	1.69
48633953--48634009	29	2.0	29	96	0	105	28	22	12	36	1.90
48635058--48635104	23	2.0	23	100	0	94	29	14	8	46	1.74
48637126--48637297	93	1.8	93	94	0	308	28	28	20	22	1.99
48637118--48637293	46	3.8	46	78	12	216	29	27	20	22	1.98
48640154--48640436	50	5.6	50	76	8	209	33	26	16	23	1.96
48640208--48640389	101	1.8	101	89	4	287	30	25	19	24	1.98
48640158--48640436	151	1.8	150	86	6	402	33	26	16	23	1.96
48644012--48644348	171	2.0	171	96	0	629	36	19	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48644663--48644790	50	2.6	50	85	6	172	28	30	17	24	1.97
48644611--48644790	49	3.7	49	80	8	174	26	30	17	25	1.97
48647144--48647190	15	3.2	14	82	8	58	55	12	17	14	1.70
48647346--48647371	2	13.0	2	100	0	52	50	0	0	50	1.00
48649700--48649982	50	5.6	50	78	6	223	31	24	18	25	1.97
48652125--48652239	42	2.7	43	77	7	128	26	14	28	30	1.95
48662210--48662359	43	3.5	43	78	8	155	34	23	14	27	1.94
48665842--48666023	39	4.6	39	90	0	238	21	31	23	23	1.98
48665872--48666023	39	3.9	39	93	0	241	21	31	23	23	1.98
48672414--48672632	122	1.8	121	81	5	271	31	11	23	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433