Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  388  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120935366--120935400
18
2.0
17
88
5
52
31
0
0
68
0.90
120936759--120936822
31
2.1
31
82
5
76
34
10
12
42
1.78
120938006--120938058
16
3.2
16
75
2
52
58
1
0
39
1.09
120938031--120938088
28
2.1
27
83
3
71
65
0
1
32
1.03
120938700--120938724
12
2.1
12
100
0
50
32
8
36
24
1.84
120939316--120939381
31
2.1
31
91
0
105
33
6
12
48
1.65
120942261--120942318
19
3.4
19
64
26
56
56
13
5
24
1.57
120942260--120942323
32
2.0
32
100
0
128
56
12
6
25
1.59
120945664--120945766
38
2.7
38
83
5
127
24
23
24
28
2.00
120945764--120946131
43
8.6
43
93
0
601
12
25
31
30
1.93
120948491--120948543
15
3.6
15
78
16
58
73
3
5
16
1.17
120948542--120948572
16
1.9
16
93
0
53
67
3
16
12
1.35
120952406--120952438
18
1.9
17
88
11
50
60
6
9
24
1.49
120954842--120954886
11
3.9
11
80
11
54
35
0
0
64
0.94
120954837--120954892
24
2.3
24
87
3
76
37
0
1
60
1.07
120954943--120954975
8
4.2
8
92
7
59
60
0
39
0
0.97
120954943--120954972
15
2.0
15
100
0
60
60
0
40
0
0.97
120956932--120957156
46
4.9
46
88
3
294
40
13
23
22
1.89
120958186--120958322
56
2.4
56
80
3
168
27
16
24
32
1.96
120960021--120960126
23
4.7
23
76
5
108
68
23
1
5
1.20
120960717--120960784
27
2.8
24
70
14
59
35
2
7
54
1.43
120962660--120962695
12
3.0
12
95
0
63
27
25
5
41
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120963224--120963266
18
2.5
17
84
3
50
48
0
9
41
1.35
120965051--120965119
28
2.5
28
90
6
106
44
27
7
20
1.77
120974203--120974372
72
2.4
69
85
4
216
29
13
21
35
1.92
120974475--120974745
140
1.9
140
97
0
515
23
16
21
38
1.92
120974728--120974759
14
2.3
14
100
0
64
18
12
0
68
1.20
120974746--120974977
72
3.1
72
82
11
234
32
16
15
34
1.91
120974840--120974977
72
1.9
72
98
0
267
34
15
17
32
1.92
120974931--120975028
49
2.0
49
91
0
160
29
13
24
32
1.93
120974859--120975103
124
2.0
121
90
2
382
31
15
20
32
1.94
120974980--120975186
75
2.7
75
84
3
272
30
17
21
30
1.96
120974987--120975176
74
2.5
75
87
2
265
29
18
22
30
1.97
120975107--120975323
94
2.4
89
80
7
229
33
18
17
30
1.94
120975107--120975774
89
7.8
85
73
15
419
30
18
17
33
1.94
120975202--120975677
245
1.9
248
87
4
705
31
17
17
34
1.93
120975287--120975772
79
5.9
76
73
15
285
30
17
17
34
1.94
120975449--120975829
88
4.4
85
74
12
303
29
17
18
34
1.93
120975364--120975769
88
4.8
84
75
16
297
30
17
17
34
1.93
120975364--120975772
169
2.4
168
87
5
576
30
17
17
34
1.93
120976437--120976527
20
4.3
20
75
14
85
68
24
2
5
1.22
120976437--120976495
24
2.7
23
87
10
79
67
23
3
5
1.26
120983900--120984007
56
1.9
56
85
10
150
24
17
27
30
1.97
120986676--120986701
5
5.2
5
100
0
52
0
19
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120986798--120986853
24
2.2
26
90
6
89
10
16
3
69
1.30
120988422--120988491
20
3.4
20
80
9
79
55
4
0
40
1.19
120988464--120988556
9
10.4
9
77
13
86
51
1
0
47
1.07
120988469--120988551
19
4.7
18
73
16
75
56
1
0
42
1.07
120988460--120988542
43
1.9
43
85
9
116
53
1
0
45
1.08
120988580--120988627
23
2.1
23
100
0
96
43
8
4
43
1.53
120988932--120988997
26
2.5
27
85
7
82
56
3
0
40
1.15
120990321--120990375
22
2.7
21
73
18
53
7
10
16
65
1.45
120991154--120991216
28
2.2
28
91
0
99
31
6
30
31
1.83
120996555--120996614
28
2.1
28
87
0
84
31
6
28
33
1.83
120996844--120996900
23
2.3
24
85
8
71
36
1
1
59
1.18
120996924--120996965
17
2.4
18
76
4
50
23
4
0
71
1.05
120996916--120996966
18
2.7
18
78
6
57
25
3
0
70
1.04
120997190--120997387
3
64.0
3
91
7
317
0
31
2
65
1.06
121018108--121018269
43
3.8
43
76
6
166
31
24
14
29
1.95
121022474--121022631
43
3.7
44
83
5
189
32
25
15
26
1.95
121030829--121031000
93
1.8
93
96
0
317
27
29
21
20
1.98
121030822--121030997
46
3.8
46
79
12
216
28
29
21
20
1.98
121038362--121038532
92
1.8
93
94
1
308
28
29
21
21
1.98
121038355--121038529
46
3.8
46
78
14
207
29
29
20
20
1.98
121039722--121039752
11
2.7
12
95
5
55
58
3
0
38
1.15
121041647--121041719
23
3.2
23
76
18
73
68
2
15
13
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121041647--121041697
21
2.3
23
86
6
70
70
1
11
15
1.25
121041745--121041812
35
2.0
36
83
11
90
61
1
23
13
1.40
121044657--121044685
2
14.5
2
100
0
58
48
0
0
51
1.00
121048094--121048162
31
2.2
32
82
14
83
31
4
1
62
1.24
121048057--121048178
52
2.4
52
76
14
128
30
5
0
63
1.23
121048032--121048271
129
1.8
130
86
5
351
30
7
1
61
1.32
121048202--121048255
20
2.8
19
82
15
67
35
7
0
57
1.27
121053503--121053629
61
2.1
61
85
5
168
25
30
18
25
1.98
121057752--121057917
43
3.9
42
78
7
147
27
14
25
33
1.94
121061470--121061653
48
3.9
47
84
4
210
24
19
31
25
1.98
121061479--121061746
48
5.6
47
78
8
186
24
18
30
26
1.98
121067663--121067692
12
2.5
12
94
0
51
36
10
0
53
1.35
121072263--121072297
13
2.7
13
95
0
61
22
40
31
5
1.78
121077348--121077461
31
3.7
31
88
2
167
24
25
21
28
1.99
121077441--121077617
50
3.5
50
87
0
246
27
21
14
36
1.92
121079080--121079140
30
2.0
30
100
0
122
44
6
13
36
1.69
121084720--121084780
25
2.8
20
73
23
59
49
14
11
24
1.77
121084735--121084785
25
2.0
25
100
0
102
47
15
11
25
1.80
121090842--121090870
5
5.8
5
100
0
58
82
0
0
17
0.66
121094956--121095084
51
2.5
51
75
12
122
32
6
4
55
1.47
121094999--121095312
26
12.3
26
67
6
122
30
7
3
58
1.41
121095441--121095498
15
3.8
16
73
15
59
27
5
0
67
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121095488--121095539
21
2.4
21
81
9
61
26
1
5
65
1.26
121097434--121097478
19
2.4
19
85
7
56
28
24
8
37
1.86
121101523--121101640
44
2.6
45
82
1
148
27
13
26
33
1.94
121101796--121102255
44
10.1
44
75
8
375
30
18
22
28
1.97
121101837--121102286
139
3.2
139
85
3
609
30
19
22
28
1.98
121102117--121102286
88
1.9
89
80
8
180
28
18
24
28
1.98
121101837--121102366
139
3.8
139
79
6
322
30
19
21
28
1.98
121103893--121103934
19
2.2
20
87
12
61
33
2
2
61
1.21
121103918--121104033
50
2.3
49
74
12
110
35
6
3
54
1.44
121103948--121104067
26
4.7
26
77
4
100
30
5
5
59
1.42
121104188--121104253
26
2.5
26
80
9
64
34
9
1
54
1.41
121104404--121104491
21
3.6
25
73
20
69
28
1
3
67
1.14
121110702--121110787
41
2.1
40
82
2
100
65
10
3
20
1.38
121110774--121110838
28
2.3
27
76
7
67
63
0
7
29
1.22
121112494--121112543
7
6.9
7
84
8
64
28
0
2
70
0.99
121113970--121114017
25
1.9
26
87
8
73
56
2
8
33
1.41
121115087--121115173
44
2.0
44
93
0
147
39
22
10
27
1.87
121119569--121119729
44
3.7
44
76
6
130
27
24
19
27
1.99
121119800--121120246
44
9.8
45
72
9
172
31
21
17
29
1.97
121119892--121120699
44
17.7
44
71
10
318
29
21
19
29
1.97
121119531--121120241
278
2.6
277
85
2
962
29
21
18
29
1.97
121119569--121120474
278
3.3
272
82
6
881
29
21
18
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121119892--121120753
227
3.8
227
87
2
1111
29
21
19
29
1.97
121119801--121120474
88
7.4
89
70
15
308
30
21
18
29
1.97
121122033--121122088
27
2.1
27
100
0
112
17
17
14
50
1.79
121123897--121124014
59
2.0
59
93
0
200
16
32
38
11
1.86
121124746--121124772
11
2.5
11
100
0
54
44
0
0
55
0.99
121124751--121124775
13
1.9
13
100
0
50
44
0
0
56
0.99
121137378--121137641
85
3.0
88
80
6
286
29
14
18
37
1.91
121137531--121137566
14
2.5
15
91
8
58
22
13
5
58
1.56
121137546--121137713
73
2.3
73
82
11
216
30
17
19
32
1.95
121137693--121137737
14
3.2
14
93
0
72
13
20
6
60
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433