genome.fa.s6.2.7.7.80.10.50.1000.333.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  333  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104141568--104141781	93	2.3	96	84	4	267	28	28	18	24	1.98
104141712--104141880	48	3.6	47	88	4	225	23	26	21	28	1.99
104144347--104144390	15	3.0	15	83	3	54	59	15	15	9	1.61
104145469--104145554	40	2.2	40	86	0	118	30	18	23	27	1.98
104145481--104145572	40	2.3	40	80	0	103	27	22	22	27	1.99
104145635--104145846	40	5.2	40	72	10	142	28	17	23	30	1.97
104146273--104146354	14	5.9	14	84	2	103	21	0	41	36	1.54
104146248--104146407	7	22.7	7	69	15	71	23	0	36	40	1.55
104147109--104147142	18	1.9	18	88	5	52	50	2	2	44	1.32
104147955--104148078	64	2.0	63	84	4	162	23	6	10	59	1.53
104154486--104154596	3	36.7	3	73	12	75	57	1	10	29	1.43
104154491--104154641	20	7.7	20	68	20	68	57	2	11	28	1.47
104154493--104154551	23	2.6	23	83	0	73	59	3	8	28	1.43
104154963--104155056	3	32.7	3	78	12	99	61	1	4	32	1.22
104155843--104155886	15	2.6	17	86	10	56	81	9	4	4	0.96
104156667--104157679	88	11.5	88	88	1	1420	28	22	23	26	1.99
104156858--104157610	44	17.1	44	64	9	228	28	22	23	26	1.99
104157719--104157920	44	4.7	43	75	6	176	26	21	22	30	1.99
104157718--104157970	130	1.9	130	88	0	380	26	21	21	30	1.99
104164635--104164715	3	27.3	3	73	12	60	61	0	7	30	1.23
104164634--104164708	12	6.0	12	76	14	71	58	0	9	32	1.30
104164791--104164901	3	36.7	3	72	12	57	57	2	9	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104164917--104164956	21	2.0	20	85	9	55	62	2	5	30	1.29
104165268--104165358	3	31.7	3	78	12	102	63	2	2	31	1.18
104169962--104170030	28	2.5	28	93	4	115	30	27	13	28	1.94
104179881--104180192	85	3.7	86	82	5	352	25	15	27	31	1.96
104179881--104180204	43	7.6	43	78	9	324	25	15	27	31	1.96
104183081--104183310	95	2.4	95	82	3	257	23	27	20	28	1.99
104183136--104183302	48	3.5	48	76	4	158	22	27	20	29	1.98
104183081--104183348	94	2.8	93	79	7	218	23	26	20	28	1.99
104183930--104183980	20	2.7	18	82	14	59	37	21	0	41	1.54
104187201--104187462	40	6.6	40	88	0	389	35	28	14	21	1.93
104188935--104188994	19	3.2	19	92	2	95	60	5	0	35	1.19
104192217--104192254	19	2.1	18	85	9	51	26	0	21	52	1.47
104195800--104195905	37	2.9	37	95	0	185	23	33	18	24	1.97
104196530--104196596	32	2.1	32	100	0	134	26	13	8	50	1.71
104199516--104199994	40	12.0	40	93	0	814	27	29	21	20	1.98
104201270--104201372	37	2.8	37	95	0	179	25	32	19	23	1.98
104204789--104204857	28	2.5	28	95	2	122	18	10	27	43	1.82
104206483--104206520	20	1.9	20	88	0	58	52	10	2	34	1.50
104212794--104212862	28	2.5	28	95	2	122	18	10	27	43	1.82
104213941--104213965	12	2.1	12	100	0	50	68	0	32	0	0.90
104218991--104219068	28	2.8	27	88	3	102	30	23	15	30	1.95
104220609--104220764	43	3.6	43	77	8	147	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104222630--104222693	31	2.1	31	90	0	101	23	21	15	39	1.92
104222908--104223026	23	5.1	23	90	1	175	31	21	20	26	1.97
104223077--104223123	20	2.3	20	92	0	76	34	19	12	34	1.89
104235996--104236312	47	6.7	47	73	11	195	24	29	18	26	1.98
104236046--104236312	94	2.9	91	74	9	254	25	30	17	26	1.97
104237713--104237956	40	6.1	40	85	2	276	28	26	20	25	1.99
104239569--104239642	29	2.6	29	95	0	139	27	31	14	27	1.95
104239510--104239642	58	2.3	58	80	2	133	24	33	17	24	1.96
104248206--104248409	40	5.1	39	85	4	230	26	26	21	24	1.99
104248496--104248684	64	3.0	64	58	16	142	33	26	11	28	1.91
104248378--104248716	123	2.8	123	95	0	597	33	25	10	30	1.90
104255048--104255149	41	2.5	41	91	3	161	28	27	21	22	1.99
104258137--104258276	37	3.8	37	95	0	244	24	30	20	25	1.98
104258417--104258946	48	11.0	48	97	0	970	31	28	6	33	1.82
104274427--104274499	29	2.5	29	84	0	92	28	17	26	27	1.98
104278184--104278356	46	3.8	45	75	13	172	23	20	26	29	1.99
104283311--104283371	30	2.0	30	96	0	113	32	3	18	45	1.65
104292342--104292372	10	3.1	10	95	0	53	64	9	0	25	1.24
104293760--104294022	45	5.8	45	75	8	185	19	20	16	43	1.88
104293810--104294022	90	2.4	88	83	7	243	18	20	16	44	1.87
104296840--104296914	33	2.3	33	82	11	84	24	24	13	38	1.91
104300079--104300122	12	3.7	12	87	0	70	31	40	15	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104300230--104300267	18	2.1	18	95	0	67	42	34	18	5	1.73
104301187--104301340	43	3.6	41	81	6	150	30	24	18	25	1.98
104305112--104305315	40	5.1	40	86	2	257	24	21	27	26	1.99
104313237--104313440	40	5.1	40	86	2	257	24	21	27	26	1.99
104315398--104315433	17	2.1	17	89	0	54	22	2	0	75	0.94
104315403--104315436	14	2.3	15	90	5	52	26	0	0	73	0.83
104322223--104322315	42	2.2	43	82	5	109	30	23	18	27	1.98
104322222--104322362	44	3.3	42	75	10	135	29	22	19	28	1.98
104323058--104323140	41	2.0	41	95	0	148	49	12	12	26	1.75
104335065--104335102	2	19.0	2	100	0	76	50	0	0	50	1.00
104337061--104337268	40	5.2	39	84	1	209	25	25	22	26	2.00
104337061--104337266	80	2.6	81	84	3	247	24	26	22	26	2.00
104342785--104342846	17	3.5	17	70	12	52	59	1	3	35	1.23
104344909--104344953	23	1.9	24	86	4	65	40	0	2	57	1.11
104345429--104345488	18	2.9	22	80	20	60	50	8	8	33	1.63
104345454--104345490	18	2.1	18	100	0	74	56	5	10	27	1.55
104346544--104346593	21	2.3	22	79	10	57	22	22	26	30	1.99
104366774--104366813	13	3.1	13	85	0	62	17	30	35	17	1.93
104372160--104372289	45	2.9	45	89	2	183	22	20	30	26	1.98
104380208--104380337	45	2.9	45	89	2	183	22	20	30	26	1.98
104392667--104392758	28	3.3	28	81	0	112	18	42	19	19	1.90
104393711--104393885	47	3.7	47	78	12	180	25	28	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104393805--104393931	47	2.7	45	79	11	123	25	29	15	29	1.96
104397138--104397238	50	2.0	50	92	0	166	38	30	9	20	1.85
104399044--104399098	24	2.3	24	87	6	76	49	7	1	41	1.41
104413860--104413890	12	2.6	12	94	0	53	0	25	0	74	0.82
104413970--104414000	16	1.9	16	93	0	53	54	3	0	41	1.16
104414399--104414488	36	2.5	35	89	5	137	21	14	2	62	1.42
104415803--104415876	23	3.3	23	66	30	68	51	25	4	18	1.64
104415794--104415884	45	2.0	45	97	0	173	50	26	3	19	1.63
104420677--104420811	29	4.7	29	86	3	155	23	31	15	29	1.95
104420623--104420812	58	3.3	58	77	4	179	24	33	16	26	1.96
104428779--104428913	29	4.7	29	86	3	155	23	31	15	29	1.95
104428725--104428914	58	3.3	58	77	4	179	24	33	16	26	1.96
104432214--104432367	40	3.8	40	80	1	157	25	26	21	26	1.99
104440327--104440480	40	3.8	40	80	1	157	25	26	21	26	1.99
104445434--104445470	15	2.4	16	86	8	51	62	5	2	29	1.31
104459130--104459168	14	2.7	15	92	4	62	46	2	12	38	1.56
104459151--104459196	21	2.2	21	92	3	76	36	0	8	54	1.32
104460109--104460155	13	3.4	14	76	8	51	48	0	0	51	1.00
104461672--104461712	20	2.1	20	86	4	57	60	0	0	39	0.96
104461672--104461727	19	2.9	19	84	5	69	55	0	0	44	0.99
104461686--104461754	17	4.0	17	74	9	59	53	0	0	46	1.00
104464840--104464918	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104465563--104465597	8	4.4	8	96	0	61	40	8	0	51	1.33
104465558--104465597	16	2.5	16	87	0	62	40	7	2	50	1.44
104466803--104466833	14	2.2	14	100	0	62	0	12	38	48	1.42
104466885--104466944	29	2.1	29	96	0	111	21	13	25	40	1.89
104467096--104467135	2	20.0	2	100	0	80	50	0	0	50	1.00
104467646--104467697	24	2.2	24	89	0	77	50	9	3	36	1.54
104473103--104473234	29	4.6	29	80	3	131	25	32	15	26	1.96
104480893--104481024	29	4.6	29	83	0	138	25	33	15	25	1.95
104482528--104482699	47	3.6	47	90	1	218	27	30	8	33	1.86
104485579--104485764	40	4.6	41	82	7	179	25	20	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433