Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  116  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35403896--35403932
13
3.0
13
84
7
51
62
0
0
37
0.96
35403988--35404070
10
6.9
13
71
28
53
60
6
0
33
1.21
35403967--35404046
24
3.3
24
85
5
99
58
3
0
37
1.16
35403996--35404036
13
3.3
13
76
13
50
63
4
0
31
1.15
35404128--35404175
21
2.3
21
82
10
64
52
0
0
47
1.00
35404136--35404174
20
2.0
21
90
10
64
56
0
0
43
0.99
35403870--35404199
140
2.4
139
76
13
333
54
3
1
39
1.29
35404151--35404251
33
3.0
34
85
8
118
56
1
1
39
1.22
35404185--35404263
20
4.1
20
66
25
53
58
1
1
39
1.14
35404217--35404276
22
2.5
24
81
7
79
55
5
0
40
1.22
35404418--35404466
12
4.5
12
76
23
54
65
0
0
34
0.93
35404519--35404560
21
2.0
21
85
4
57
76
4
0
19
0.96
35404755--35404783
14
2.0
15
93
6
51
55
0
0
44
0.99
35404827--35404884
14
3.7
15
75
11
55
55
0
1
43
1.10
35404827--35404866
17
2.5
17
81
18
50
55
0
2
42
1.13
35404867--35404976
58
1.9
56
80
10
125
58
2
1
37
1.23
35405822--35405880
28
2.1
29
96
3
111
6
33
3
55
1.43
35406633--35406897
132
2.0
132
94
1
469
24
13
15
46
1.81
35409146--35409196
26
2.0
26
84
3
68
49
7
3
39
1.51
35409269--35409357
44
2.0
46
86
8
130
35
23
5
34
1.79
35409343--35409397
16
3.4
16
82
0
74
30
27
5
36
1.79
35418209--35418442
48
4.9
47
76
9
188
26
28
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35427515--35427555
21
2.0
20
85
4
55
41
0
14
43
1.45
35428248--35428313
25
2.5
26
82
4
71
24
25
19
30
1.98
35431507--35431610
23
4.4
23
76
12
95
37
14
21
26
1.92
35431505--35431620
47
2.5
48
85
5
157
37
14
20
26
1.92
35431505--35431620
24
4.9
24
80
5
121
37
14
20
26
1.92
35435334--35435369
15
2.5
14
86
8
54
19
5
11
63
1.46
35437002--35437053
20
2.8
18
78
21
63
42
1
1
53
1.23
35436961--35437095
69
2.0
68
85
1
180
41
2
2
52
1.32
35438251--35438303
23
2.4
22
81
9
63
43
7
26
22
1.80
35438428--35438473
19
2.4
19
88
0
65
52
6
19
21
1.69
35438766--35438795
8
3.8
8
95
0
51
76
0
3
20
0.92
35441333--35441383
27
1.9
26
88
11
77
45
5
1
47
1.38
35442316--35442348
3
11.0
3
93
0
57
0
33
3
63
1.10
35445571--35445638
34
2.0
34
97
0
127
44
16
11
27
1.82
35450827--35450896
29
2.4
28
83
13
79
44
1
2
51
1.25
35456357--35456463
16
6.8
16
67
12
69
33
2
9
54
1.47
35457593--35457630
20
1.9
20
94
0
67
23
0
5
71
1.07
35457591--35457636
20
2.3
20
80
0
65
30
0
4
65
1.12
35460463--35460500
16
2.3
17
86
4
51
84
0
10
5
0.77
35462684--35462738
28
2.0
28
100
0
110
40
7
7
45
1.60
35462686--35462750
28
2.3
28
89
5
87
43
7
6
43
1.58
35471540--35471758
40
5.4
40
87
2
278
26
23
26
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35471540--35471758
120
1.8
121
87
3
325
26
23
26
24
2.00
35471631--35471798
80
2.1
80
80
3
178
27
23
25
23
2.00
35478232--35478319
28
3.2
28
87
3
117
37
21
23
17
1.94
35478733--35478762
8
3.8
8
90
0
51
3
23
23
50
1.64
35479547--35479600
3
18.7
3
75
21
53
68
0
27
3
1.06
35479544--35479592
18
2.8
17
82
11
71
67
0
28
4
1.09
35479544--35479600
18
3.2
17
80
11
69
68
0
28
3
1.06
35485230--35485398
46
3.6
46
75
10
155
31
20
25
22
1.98
35485230--35485535
48
6.5
46
72
10
194
28
19
27
24
1.99
35485230--35485440
94
2.2
94
83
1
253
31
20
25
23
1.98
35495757--35495932
50
3.5
49
80
4
174
26
17
27
29
1.97
35497794--35497976
40
4.6
40
82
5
174
28
22
26
22
1.99
35505885--35505985
39
2.5
40
85
1
132
30
22
24
21
1.99
35505885--35506067
40
4.6
40
82
3
181
27
22
26
23
1.99
35513985--35514085
39
2.5
40
85
1
132
30
22
24
21
1.99
35513985--35514167
40
4.6
40
82
3
181
27
22
26
23
1.99
35518238--35518310
5
13.8
5
76
16
51
73
8
1
16
1.13
35518284--35518433
77
1.9
77
95
2
275
54
11
12
22
1.69
35521694--35521855
43
3.8
43
83
2
184
29
15
22
32
1.95
35522105--35522160
19
3.3
19
62
27
52
28
7
16
48
1.72
35522105--35522169
32
2.0
32
100
0
130
29
9
15
46
1.77
35524398--35524424
10
2.7
10
100
0
54
22
7
22
48
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35532480--35532573
4
23.2
4
70
21
54
73
1
5
20
1.09
35532483--35532543
21
3.0
21
78
9
63
72
1
3
22
1.09
35532539--35532569
16
1.9
16
100
0
62
77
0
9
12
0.99
35537038--35537168
30
4.5
30
86
8
171
32
13
25
28
1.94
35537038--35537168
58
2.2
58
86
4
174
32
13
25
28
1.94
35544924--35545054
30
4.5
30
86
8
171
32
13
25
28
1.94
35544924--35545054
58
2.2
58
86
4
174
32
13
25
28
1.94
35552333--35552463
30
4.5
30
86
8
171
32
13
25
28
1.94
35552333--35552463
58
2.2
58
86
4
174
32
13
25
28
1.94
35558473--35558512
20
2.0
21
90
5
64
77
0
5
17
0.94
35564447--35564653
67
3.1
64
76
11
188
31
16
28
22
1.96
35564951--35565103
28
5.6
27
72
12
123
31
15
27
25
1.96
35564962--35565110
54
2.7
55
86
4
212
32
16
26
24
1.96
35565033--35565111
28
2.9
27
77
11
88
29
20
27
22
1.98
35570629--35570723
33
2.9
33
75
9
95
25
20
25
29
1.99
35573278--35573347
28
2.5
28
90
2
106
22
8
24
44
1.81
35575069--35575232
71
2.3
71
98
0
319
19
28
17
35
1.94
35575069--35575266
71
2.8
70
90
3
249
21
28
16
33
1.95
35577745--35577782
20
1.9
20
88
0
58
52
10
2
34
1.50
35584004--35584064
28
2.3
25
86
10
86
19
8
27
44
1.79
35584004--35584070
26
2.5
27
90
7
102
19
8
26
44
1.80
35586669--35586814
40
3.8
39
80
4
147
26
22
27
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35594646--35594812
40
4.2
40
79
6
169
26
22
26
24
2.00
35597591--35597781
40
4.8
40
84
1
213
25
24
26
23
2.00
35597594--35597823
80
2.9
80
79
5
223
27
23
26
22
2.00
35597632--35597823
40
4.8
40
78
10
169
28
24
26
21
1.99
35597591--35597809
120
1.8
121
81
4
273
26
24
26
22
2.00
35599308--35599347
20
2.1
19
85
4
53
32
17
0
50
1.47
35606894--35607014
42
2.9
41
79
8
125
29
28
18
23
1.98
35606855--35607014
86
1.9
84
83
6
205
28
25
19
26
1.99
35625983--35626038
26
2.2
26
90
0
85
16
25
21
37
1.93
35625989--35626039
26
2.0
26
96
0
93
17
19
23
39
1.92
35626634--35626693
26
2.3
26
79
0
75
38
21
20
20
1.94
35626619--35626696
26
3.0
27
72
7
72
35
20
21
21
1.96
35627951--35628013
31
2.0
31
88
11
94
23
25
14
36
1.93
35628206--35628351
25
6.0
24
88
5
188
29
23
19
28
1.98
35628400--35628466
20
3.3
20
87
0
107
34
17
11
35
1.87
35630442--35630467
11
2.4
11
100
0
52
26
19
7
46
1.77
35641177--35641379
40
5.1
39
85
6
239
27
29
19
23
1.98
35641173--35641383
80
2.7
79
86
4
291
27
28
19
24
1.99
35649278--35649480
40
5.1
40
86
3
250
27
29
20
22
1.99
35649274--35649484
80
2.7
79
87
4
300
27
27
20
23
1.99
35650231--35650262
2
16.0
2
100
0
64
50
0
0
50
1.00
35651746--35651777
12
2.7
12
100
0
64
21
0
37
40
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35654596--35654665
29
2.4
29
95
0
122
40
14
21
24
1.90
35656314--35656397
42
2.0
42
88
0
123
30
22
15
30
1.95
35664343--35664522
40
4.5
40
90
2
265
26
26
23
23
2.00
35674357--35674670
48
6.5
49
79
8
181
23
28
19
28
1.98
35674506--35674719
48
4.5
48
81
6
233
22
28
19
28
1.98
35679744--35679861
42
2.8
42
85
5
166
20
27
28
22
1.99
35679828--35679891
30
2.1
30
91
0
101
18
29
28
23
1.98
35679790--35679925
72
1.9
72
89
0
209
16
27
32
23
1.96
35686976--35687032
25
2.3
25
96
3
107
33
24
0
42
1.55
35687042--35687083
23
1.9
22
85
9
59
59
9
2
28
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433