genome.fa.s6.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  169  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52728835--52728984	39	3.9	39	91	4	234	18	24	32	24	1.97
52728835--52728984	76	2.0	77	91	1	248	18	24	32	24	1.97
52749734--52749826	6	15.3	6	69	18	59	49	11	18	20	1.78
52749755--52749826	31	2.4	31	88	2	101	48	11	19	20	1.79
52749944--52750022	27	3.0	26	79	5	86	39	16	24	20	1.92
52750916--52751057	27	5.3	27	80	6	153	40	21	9	29	1.84
52750916--52751066	81	1.9	81	84	2	205	39	21	8	29	1.83
52751060--52751320	54	4.8	54	94	0	432	27	22	8	41	1.81
52751068--52751320	27	9.3	27	88	0	371	27	22	7	41	1.81
52751068--52751365	81	3.7	81	84	3	348	30	21	8	40	1.82
52751356--52751427	27	2.7	27	84	0	90	47	22	5	25	1.73
52751356--52751454	27	3.7	26	75	5	72	42	22	7	28	1.79
52751439--52751634	27	7.3	27	90	0	275	34	18	22	24	1.96
52752036--52752106	31	2.3	31	95	0	124	21	16	14	47	1.81
52752066--52752148	6	13.5	6	71	18	64	19	18	15	46	1.83
52752062--52752134	25	3.0	25	87	2	103	19	20	15	45	1.86
52752843--52752905	22	2.9	22	79	13	76	34	23	23	17	1.96
52753420--52753506	27	3.2	27	86	0	111	28	20	17	33	1.95
52753545--52753696	27	5.7	26	79	7	144	26	8	23	42	1.82
52753538--52753696	81	2.0	81	82	7	198	27	8	22	40	1.83
52754736--52754885	33	4.5	33	72	12	108	31	15	26	27	1.96
52761329--52761599	39	7.0	39	93	0	454	21	25	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52771312--52771367	18	2.9	19	78	14	62	39	3	1	55	1.28
52771306--52771369	19	3.3	19	77	16	69	39	4	1	54	1.31
52772148--52772301	76	2.0	76	100	0	308	41	6	5	46	1.52
52773454--52773545	34	2.5	39	70	18	95	31	27	17	23	1.97
52773470--52773548	34	2.3	35	86	2	106	34	24	17	24	1.96
52775638--52775669	8	4.0	8	100	0	64	50	0	12	37	1.41
52775638--52775677	8	4.8	9	93	3	50	50	0	10	40	1.36
52779506--52779543	20	1.9	20	88	0	58	44	7	10	36	1.68
52781664--52781757	44	2.1	44	100	0	188	42	17	12	27	1.85
52784022--52784062	15	2.8	15	88	3	66	19	39	2	39	1.65
52792440--52792610	93	1.8	93	96	0	315	27	29	22	20	1.98
52792432--52792612	46	3.9	46	81	9	233	27	29	21	20	1.98
52794988--52795076	30	3.0	30	80	8	101	57	15	16	10	1.65
52794988--52795067	15	5.4	15	80	7	92	58	13	17	10	1.62
52794999--52795076	15	5.2	15	78	9	79	56	15	16	11	1.67
52797987--52798158	93	1.8	93	96	0	317	27	30	22	20	1.98
52797979--52798154	46	3.8	46	81	10	232	28	29	21	20	1.98
52809337--52809504	40	4.2	40	77	3	151	22	26	23	27	2.00
52819880--52820066	71	2.7	68	93	5	281	18	28	18	34	1.95
52819903--52820066	71	2.3	71	100	0	328	18	28	17	35	1.94
52819903--52820100	71	2.8	70	92	3	276	20	28	17	33	1.95
52827498--52827661	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52827498--52827695	71	2.8	70	92	3	276	20	28	17	33	1.95
52834028--52834092	31	2.1	31	91	0	103	23	21	15	40	1.91
52834302--52834437	26	5.3	26	88	4	199	25	23	22	28	1.99
52834302--52834437	52	2.7	52	94	5	235	25	23	22	28	1.99
52834485--52834541	20	2.9	21	90	10	86	33	19	8	38	1.82
52834493--52834541	5	10.2	5	77	16	50	34	20	6	38	1.77
52841104--52841156	25	2.1	25	100	0	106	15	11	16	56	1.67
52850503--52850938	50	8.6	50	73	7	240	25	16	26	30	1.97
52850554--52850735	101	1.8	101	84	4	251	25	17	26	30	1.97
52850549--52850944	151	2.6	151	87	0	549	25	17	26	30	1.98
52850705--52850886	101	1.8	101	82	2	240	25	18	26	29	1.98
52850559--52850936	50	7.5	50	73	7	289	26	17	26	29	1.98
52851504--52851888	180	2.1	181	85	4	501	38	7	18	35	1.79
52854325--52854475	40	3.8	40	77	13	134	27	23	26	22	2.00
52854362--52854491	40	3.2	40	77	4	138	24	23	27	23	2.00
52858017--52858167	40	3.8	40	77	13	134	27	23	26	22	2.00
52858054--52858183	40	3.2	40	77	4	138	24	23	27	23	2.00
52860157--52860210	11	5.4	10	78	12	58	35	11	18	35	1.86
52860257--52860328	26	2.8	26	83	8	94	26	26	20	26	1.99
52860267--52860341	26	2.9	25	84	9	89	26	25	20	28	1.99
52860548--52860631	31	2.7	31	88	1	125	30	15	27	26	1.96
52861652--52861758	40	2.7	39	85	5	144	24	20	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52864779--52864877	46	2.2	46	100	0	198	30	23	8	38	1.83
52865485--52865521	13	2.8	13	95	0	65	16	40	29	13	1.86
52878720--52878848	40	3.3	38	82	5	159	24	27	23	24	2.00
52878720--52878885	79	2.1	79	83	6	203	23	27	22	26	2.00
52878736--52878885	40	3.8	38	82	11	144	22	27	23	26	2.00
52886717--52886881	40	4.2	39	81	3	156	23	27	23	26	2.00
52886731--52886881	80	1.9	79	83	6	198	23	27	23	26	2.00
52892212--52892341	40	3.2	40	82	2	172	24	27	23	24	2.00
52892228--52892378	40	3.8	39	81	6	153	22	27	23	27	1.99
52892212--52892378	80	2.1	79	83	7	205	23	26	22	26	2.00
52895202--52895345	55	2.6	54	77	1	144	38	19	22	20	1.94
52895205--52895408	53	3.8	54	77	1	212	37	17	23	22	1.94
52899462--52899515	27	2.0	27	85	3	74	35	20	22	22	1.96
52899516--52899634	27	4.4	27	79	0	112	27	20	15	36	1.93
52899532--52899634	54	1.9	54	87	0	152	28	19	16	35	1.93
52901381--52901629	27	9.2	28	85	6	146	38	20	15	26	1.91
52901407--52901629	54	4.1	54	82	4	218	38	19	16	26	1.92
52901436--52901638	81	2.5	82	84	3	250	36	18	17	26	1.93
52901463--52901638	27	6.5	27	89	0	253	36	18	19	26	1.94
52902366--52902397	2	16.0	2	100	0	64	50	0	0	50	1.00
52902399--52902455	27	2.2	26	83	3	69	19	24	21	35	1.96
52924115--52924167	27	2.0	27	92	3	90	56	5	11	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52929305--52929423	59	2.0	60	82	8	145	42	16	15	26	1.88
52930614--52930780	40	4.2	40	78	6	160	25	22	27	24	2.00
52937317--52937425	57	1.9	56	83	9	141	36	18	16	28	1.92
52938618--52938784	40	4.2	40	78	6	160	25	22	27	24	2.00
52941376--52941560	79	2.3	82	83	7	229	24	24	27	23	2.00
52941377--52941568	40	4.8	40	79	7	151	24	24	28	22	2.00
52941376--52941593	79	2.7	79	79	6	183	24	23	27	24	2.00
52946956--52946987	14	2.3	14	100	0	64	25	21	21	31	1.98
52950111--52950186	34	2.3	33	86	2	107	25	22	23	28	1.99
52950127--52950201	34	2.2	33	81	6	87	22	21	26	29	1.99
52951360--52951422	31	2.0	31	96	0	117	25	19	23	31	1.98
52963016--52963072	9	5.8	10	73	22	50	38	10	17	33	1.84
52963013--52963089	20	3.9	21	86	9	101	38	10	18	32	1.84
52963034--52963089	11	5.5	11	71	16	57	37	12	17	32	1.88
52963138--52963274	26	5.4	26	83	5	174	29	19	24	27	1.99
52963138--52963274	52	2.7	51	91	5	208	29	19	24	27	1.99
52965435--52965466	2	16.0	2	100	0	64	50	0	0	50	1.00
52969774--52970107	49	6.9	49	95	2	604	32	8	29	29	1.87
52969828--52969903	22	3.3	22	64	10	62	30	10	31	27	1.90
52969776--52970107	96	3.4	96	95	1	601	31	8	29	29	1.87
52969774--52970107	145	2.3	144	95	2	598	32	8	29	29	1.87
52970194--52970284	37	2.4	37	96	1	164	23	18	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52975716--52975749	2	17.0	2	100	0	68	50	0	0	50	1.00
52976214--52976372	45	3.6	45	89	0	239	23	22	27	26	1.99
52977367--52977418	3	17.3	3	100	0	104	67	0	0	32	0.91
52977563--52977643	37	2.2	37	97	0	153	29	6	16	48	1.70
52982775--52982864	38	2.4	38	96	0	171	24	11	28	35	1.90
52983461--52983646	40	4.7	40	89	5	261	24	20	27	27	1.99
52983461--52983669	80	2.6	79	82	10	230	25	20	26	27	1.99
52990917--52991006	38	2.4	38	100	0	180	24	12	28	34	1.91
52994250--52994339	38	2.4	38	96	0	171	24	11	28	35	1.90
52994938--52995161	40	5.6	40	90	4	319	25	20	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433