Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  342  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107325786--107325896
47
2.4
47
84
6
154
35
23
16
25
1.95
107330614--107330638
2
12.5
2
100
0
50
48
0
0
52
1.00
107331039--107331105
33
2.0
33
100
0
134
37
5
11
44
1.66
107333338--107333387
9
5.4
9
79
11
57
32
2
2
64
1.16
107333333--107333400
28
2.4
28
74
13
77
29
2
1
66
1.15
107333346--107333399
28
2.0
28
88
3
83
29
3
1
64
1.21
107336794--107336843
24
2.1
24
100
0
100
36
12
4
48
1.59
107345000--107345035
18
1.9
19
88
5
56
41
27
5
25
1.77
107348211--107348624
208
2.0
208
96
0
765
36
4
18
39
1.72
107348749--107348829
20
4.2
19
75
12
83
18
30
14
35
1.91
107358964--107359015
20
2.6
20
84
0
77
23
25
34
17
1.96
107367128--107367178
15
3.2
17
76
15
56
23
39
21
15
1.92
107367949--107368107
41
3.9
40
81
4
124
33
18
28
19
1.95
107367980--107368107
41
3.1
41
85
0
157
33
17
28
20
1.96
107380242--107380329
44
2.0
44
95
0
158
26
11
15
46
1.80
107380253--107380357
44
2.4
44
80
3
104
34
11
13
40
1.80
107383642--107384882
620
2.0
620
96
0
2286
33
22
10
32
1.89
107387701--107387778
39
2.0
39
97
0
147
33
16
10
39
1.83
107391055--107391161
42
2.5
42
96
0
196
28
14
33
22
1.94
107391169--107391238
27
2.5
28
86
2
97
27
14
25
32
1.94
107398141--107398270
40
3.3
39
76
8
136
23
27
23
24
2.00
107398157--107398308
40
3.8
40
78
6
148
22
26
23
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107398157--107398306
80
1.9
80
83
8
198
22
26
24
27
1.99
107408427--107408597
40
4.3
39
77
10
159
28
21
26
23
1.99
107412188--107412378
40
4.8
40
96
1
339
25
20
28
25
1.99
107412188--107412378
79
2.4
80
95
0
339
25
20
28
25
1.99
107416092--107416116
11
2.3
11
100
0
50
40
0
16
44
1.47
107416038--107416206
49
3.0
60
80
18
227
34
6
27
31
1.82
107416104--107416316
47
4.3
47
83
10
264
32
7
30
29
1.86
107416103--107416316
49
4.3
49
84
10
274
32
7
30
28
1.86
107416180--107416297
55
2.1
56
87
1
166
31
7
33
27
1.85
107425840--107425948
37
2.9
37
91
0
173
25
31
18
24
1.98
107426095--107426229
48
2.8
48
91
0
216
30
28
6
34
1.83
107426199--107426486
47
6.1
47
93
0
432
26
27
11
34
1.91
107426314--107426391
25
3.2
25
63
17
65
29
30
7
32
1.85
107432754--107432833
41
2.0
41
92
0
133
32
12
12
42
1.80
107437733--107437772
13
3.1
13
82
13
55
2
25
0
72
0.97
107441368--107441493
46
2.7
46
92
0
207
21
21
26
30
1.98
107441716--107441753
19
2.0
20
85
15
53
36
0
23
39
1.55
107446876--107446911
18
2.0
18
94
0
63
33
8
16
41
1.78
107447766--107447815
25
2.0
25
88
0
73
36
16
22
26
1.94
107456330--107456385
11
5.5
11
71
16
57
35
12
19
32
1.89
107456319--107456385
20
3.3
20
93
0
116
34
11
20
32
1.90
107456436--107456579
25
5.9
25
92
1
213
29
20
21
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107458310--107458487
40
4.5
40
87
3
236
23
24
27
25
2.00
107460104--107460132
14
2.1
14
100
0
58
20
6
20
51
1.70
107462853--107462970
59
2.0
59
96
0
218
30
22
17
28
1.97
107466317--107466574
40
6.5
40
89
2
360
24
22
27
25
2.00
107469777--107469846
27
2.5
28
90
2
115
25
12
28
32
1.93
107476741--107476765
7
3.6
7
100
0
50
12
0
28
60
1.32
107477635--107477704
27
2.5
28
90
2
115
25
12
28
32
1.93
107481227--107481333
24
4.6
22
81
10
99
33
23
17
25
1.96
107481249--107481335
24
3.7
23
89
7
140
35
24
17
22
1.95
107481227--107481333
46
2.3
47
90
6
164
33
23
17
25
1.96
107493126--107493229
40
2.6
40
83
1
120
23
31
23
22
1.98
107493216--107493247
14
2.3
14
94
0
55
25
28
25
21
1.99
107493180--107493282
53
1.9
53
92
0
170
23
32
21
23
1.98
107495840--107496023
40
4.6
39
75
6
138
26
23
27
22
2.00
107495880--107496068
80
2.4
81
77
4
186
23
24
29
22
1.99
107504373--107504475
40
2.6
40
83
3
120
23
32
22
22
1.98
107504463--107504493
14
2.3
14
94
5
55
25
29
22
22
1.99
107504427--107504527
52
1.9
52
92
4
168
22
32
20
23
1.98
107512194--107512379
40
4.7
40
90
2
277
29
19
25
25
1.99
107512726--107512754
2
14.5
2
100
0
58
48
0
0
51
1.00
107516064--107516101
19
2.0
20
85
15
53
39
23
0
36
1.55
107532053--107532102
24
2.1
24
85
10
68
82
0
4
14
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107532059--107532104
16
2.9
16
84
15
60
80
0
2
17
0.81
107533575--107533622
22
2.2
22
88
0
69
10
16
47
25
1.78
107535531--107535587
29
2.0
29
100
0
114
29
0
14
56
1.39
107537963--107538079
60
2.0
60
100
0
234
42
11
10
35
1.76
107558187--107558214
5
5.6
5
100
0
56
82
0
0
17
0.68
107559537--107559712
46
3.8
46
74
12
153
30
28
19
21
1.98
107564494--107564728
117
2.0
116
92
0
389
19
20
14
45
1.85
107570285--107570444
29
5.5
29
82
4
180
25
31
16
26
1.97
107578246--107578405
29
5.5
29
82
4
180
25
31
16
26
1.97
107586914--107586941
13
2.2
13
100
0
56
25
35
25
14
1.93
107588969--107589143
33
5.2
32
70
9
116
30
24
14
31
1.94
107588939--107589161
101
2.2
101
90
0
347
28
24
15
31
1.96
107590130--107590155
13
2.0
13
100
0
52
61
15
0
23
1.33
107593628--107593688
30
2.0
30
83
0
77
31
22
8
37
1.84
107598071--107598131
30
2.0
30
83
0
77
31
22
8
37
1.84
107600831--107601038
67
3.2
64
77
10
197
31
16
28
22
1.96
107602883--107602922
17
2.4
17
100
0
80
47
17
0
35
1.48
107609928--107609987
31
1.9
31
89
0
93
25
23
15
36
1.93
107610172--107610349
48
3.6
48
83
8
211
29
23
17
30
1.97
107610172--107610347
25
7.2
25
85
8
195
28
23
17
30
1.97
107610398--107610464
20
3.3
20
93
0
116
32
20
11
34
1.90
107610398--107610453
11
5.5
11
71
16
57
32
19
12
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107624685--107624748
31
2.1
31
96
0
119
23
21
15
39
1.92
107624940--107625058
24
5.0
24
89
5
170
26
22
21
28
1.99
107624940--107625058
47
2.5
48
89
5
170
26
22
21
28
1.99
107625109--107625147
20
2.0
20
94
0
69
33
20
7
38
1.81
107625114--107625154
20
2.0
20
90
0
64
36
21
4
36
1.75
107625191--107625238
25
1.9
25
86
0
69
25
16
25
33
1.96
107627266--107627315
21
2.4
21
100
0
100
4
24
14
58
1.53
107631842--107631870
13
2.1
14
93
6
51
68
17
0
13
1.20
107632260--107632314
22
2.5
22
76
2
67
40
20
10
29
1.86
107633027--107633056
12
2.5
12
94
0
51
56
0
30
13
1.37
107635974--107636059
24
3.6
24
96
3
165
36
25
17
20
1.95
107643712--107643820
24
4.5
24
96
0
191
36
22
17
22
1.94
107664269--107664403
49
2.7
50
82
4
157
26
18
30
24
1.98
107666289--107666375
41
2.1
41
93
0
147
32
20
18
28
1.96
107671365--107671485
29
4.2
29
90
0
170
33
14
28
23
1.95
107674820--107674849
15
2.1
15
93
6
53
13
0
40
46
1.43
107674820--107674849
7
4.1
7
91
8
51
13
0
40
46
1.43
107676117--107676212
41
2.3
40
89
5
156
30
25
17
27
1.97
107681714--107681936
122
1.8
121
91
1
367
39
10
19
29
1.86
107684247--107684365
23
5.1
23
84
5
150
29
17
20
32
1.95
107684246--107684365
45
2.6
47
85
5
163
30
17
20
32
1.95
107684575--107684634
31
1.9
31
93
0
102
36
16
21
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107693587--107693756
93
1.8
92
96
1
313
28
28
21
21
1.99
107693581--107693765
45
4.0
46
74
17
159
28
29
20
22
1.98
107699086--107699256
46
3.7
46
77
15
192
28
27
21
22
1.99
107699091--107699260
93
1.8
92
93
3
297
27
28
21
22
1.99
107700545--107700592
20
2.4
20
92
0
78
33
16
18
31
1.94
107700643--107700784
23
6.1
23
93
0
230
27
21
20
30
1.98
107700995--107701054
31
1.9
31
89
0
93
38
16
20
25
1.93
107716831--107716960
40
3.3
39
76
8
136
23
27
23
24
2.00
107716847--107716998
40
3.8
40
78
6
148
22
26
23
27
1.99
107716847--107716996
80
1.9
80
83
8
198
22
26
24
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433