Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  397  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123230736--123230777
22
1.9
22
90
0
66
59
16
14
9
1.60
123231337--123231458
10
12.2
10
69
20
69
28
4
3
63
1.31
123231340--123231404
28
2.2
29
83
8
78
24
6
1
67
1.22
123233909--123234058
61
2.5
60
85
8
205
26
24
11
38
1.89
123236475--123236508
17
2.0
17
100
0
68
41
5
5
47
1.52
123237238--123237291
20
2.7
20
80
13
65
46
1
0
51
1.11
123237423--123237451
8
3.6
8
100
0
58
44
0
0
55
0.99
123240605--123240650
16
2.9
16
80
0
56
23
0
32
43
1.54
123244516--123244695
63
2.9
63
80
5
220
29
6
33
30
1.83
123248202--123248266
29
2.2
29
86
2
85
58
6
0
35
1.23
123248240--123248288
23
2.1
23
88
3
71
61
2
0
36
1.08
123254782--123254810
5
6.0
5
92
8
51
79
0
0
20
0.74
123261006--123261057
26
2.0
26
92
0
86
19
30
7
42
1.79
123261945--123262542
177
3.4
176
85
2
815
30
21
19
29
1.97
123262313--123262410
45
2.2
43
82
8
108
31
19
23
25
1.98
123262379--123262670
132
2.2
132
93
2
502
31
21
20
27
1.98
123262433--123262629
44
4.5
45
66
21
121
32
22
18
26
1.97
123264932--123264988
28
2.0
28
96
0
105
15
29
12
42
1.84
123265967--123266014
16
3.1
15
80
19
62
27
0
2
70
0.98
123275570--123275595
11
2.4
11
100
0
52
92
0
7
0
0.39
123276222--123276269
16
3.1
15
80
19
62
27
0
2
70
0.98
123277177--123277208
7
4.4
7
96
4
55
12
12
3
71
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123283525--123283696
93
1.8
93
96
0
317
27
30
22
20
1.98
123283517--123283692
46
3.8
46
81
10
232
28
29
21
20
1.98
123288440--123288743
154
2.0
154
92
0
500
37
22
14
26
1.92
123293795--123293866
16
4.6
16
85
1
101
27
25
5
41
1.77
123294088--123294123
13
2.8
13
91
0
54
77
5
13
2
1.05
123308585--123308645
31
2.0
31
83
6
79
49
8
8
34
1.62
123309154--123309284
60
2.2
60
81
8
142
43
12
16
28
1.83
123310510--123310562
16
3.4
15
75
17
54
33
0
0
66
0.92
123313980--123314010
2
15.5
2
100
0
62
51
0
0
48
1.00
123321816--123321872
21
2.7
21
83
8
71
22
8
8
59
1.55
123321925--123321963
2
19.5
2
100
0
78
48
0
0
51
1.00
123325809--123325843
2
17.5
2
100
0
70
48
0
0
51
1.00
123341702--123341733
15
2.0
17
88
11
50
68
28
0
3
1.04
123344000--123344045
20
2.3
20
85
3
58
17
21
0
60
1.35
123352129--123352175
24
2.0
24
87
8
69
46
0
34
19
1.50
123352536--123352569
17
2.1
16
88
5
50
58
0
0
41
0.98
123353322--123353381
9
7.0
9
76
16
56
41
0
0
58
0.98
123353338--123353378
16
2.6
16
84
0
64
41
0
0
58
0.98
123353738--123353898
26
6.2
26
92
0
270
32
4
24
37
1.77
123355679--123356099
136
3.1
136
96
0
772
24
18
24
32
1.97
123356924--123356966
18
2.3
19
84
11
54
51
2
2
44
1.27
123359785--123359826
19
2.2
19
86
0
57
59
2
11
26
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123359791--123359828
19
2.0
19
94
0
67
50
5
13
31
1.63
123359883--123359937
12
4.9
12
70
17
55
45
16
1
36
1.58
123359873--123359953
32
2.5
32
93
2
135
43
14
3
38
1.64
123360047--123360075
5
5.8
5
100
0
58
41
0
17
41
1.49
123361230--123361258
2
14.5
2
100
0
58
48
0
0
51
1.00
123365645--123365946
46
7.0
45
81
13
339
22
23
14
39
1.91
123365790--123365862
36
2.0
36
100
0
146
27
21
9
41
1.84
123365744--123365946
82
2.4
83
90
3
320
24
23
13
37
1.91
123365859--123365934
38
2.0
38
100
0
152
21
26
18
34
1.96
123368079--123368130
11
4.7
11
76
9
52
63
3
0
32
1.12
123369590--123369979
48
8.2
48
84
8
426
27
14
26
31
1.95
123369889--123370012
42
3.0
41
86
3
167
30
14
24
30
1.95
123376751--123376830
32
2.5
32
79
0
88
21
23
31
23
1.98
123383535--123383630
25
3.8
25
81
10
108
29
17
19
33
1.95
123383877--123383927
18
2.9
18
72
13
52
68
1
5
23
1.22
123386154--123386326
18
9.6
18
72
9
120
38
14
12
35
1.83
123386153--123386290
54
2.6
54
79
7
154
36
13
13
35
1.85
123386443--123386473
6
5.2
6
96
0
53
48
16
19
16
1.81
123388176--123388226
22
2.3
22
79
0
57
5
15
1
76
1.07
123388166--123388216
17
3.1
16
78
10
50
5
17
1
74
1.11
123388325--123388387
31
2.0
32
82
14
78
47
3
0
49
1.17
123391043--123391083
18
2.3
18
87
8
57
75
7
0
17
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123393984--123394265
132
2.2
133
81
4
331
25
19
19
35
1.95
123406439--123406528
44
2.0
44
97
0
171
52
8
8
30
1.63
123409515--123409952
131
3.3
131
80
6
469
35
19
18
27
1.95
123414909--123414953
21
2.2
21
84
4
56
31
4
20
44
1.71
123429348--123429381
17
2.0
17
100
0
68
64
0
0
35
0.94
123437940--123437992
24
2.3
24
83
6
65
56
1
1
39
1.21
123438714--123439277
127
4.5
125
83
4
648
36
20
16
26
1.94
123438714--123439277
255
2.2
251
84
4
697
36
20
16
26
1.94
123442764--123443287
45
11.8
44
71
18
356
26
21
19
32
1.97
123442746--123443474
134
5.5
134
90
4
1043
26
22
19
31
1.98
123442766--123443284
89
5.8
87
70
19
299
26
21
19
32
1.97
123443553--123443676
64
1.9
64
87
6
180
35
17
18
28
1.94
123454539--123454656
41
3.1
41
60
28
98
32
17
28
21
1.96
123454507--123454670
71
2.3
71
100
0
328
35
17
28
18
1.94
123462037--123462154
41
3.1
41
60
28
98
32
17
28
21
1.96
123462005--123462168
71
2.3
71
100
0
328
35
17
28
18
1.94
123469609--123469726
41
3.1
41
60
28
98
32
17
28
21
1.96
123469577--123469740
71
2.3
71
100
0
328
35
17
28
18
1.94
123481268--123481327
30
2.0
30
93
0
102
45
15
11
28
1.81
123482887--123482928
21
2.0
21
85
0
57
50
4
21
23
1.68
123483085--123483109
12
2.1
12
100
0
50
32
0
32
36
1.58
123497192--123497313
43
2.8
44
83
2
156
40
11
16
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123500813--123500856
16
2.8
16
78
0
52
38
0
2
59
1.10
123503975--123504014
20
2.0
20
100
0
80
15
0
40
45
1.46
123503976--123504022
20
2.3
20
92
0
76
14
0
40
44
1.46
123504413--123504456
22
2.0
22
81
4
52
54
0
6
38
1.27
123507749--123507915
27
6.2
28
88
4
195
34
22
23
18
1.96
123507749--123507917
54
3.1
54
88
1
232
34
23
23
18
1.96
123509533--123509670
26
5.2
26
92
1
222
37
24
5
32
1.77
123509544--123509670
52
2.4
52
98
0
245
37
25
4
32
1.77
123511016--123511079
33
1.9
33
96
0
119
39
26
17
17
1.91
123511917--123511950
14
2.4
14
85
5
50
76
5
0
17
0.98
123513755--123513789
2
17.5
2
100
0
70
48
0
0
51
1.00
123515488--123515543
3
18.7
3
100
0
112
33
32
0
33
1.58
123515542--123515582
3
13.7
3
100
0
82
34
0
0
65
0.93
123522814--123522894
41
2.0
41
97
0
153
37
16
7
39
1.76
123527296--123527322
14
1.9
14
100
0
54
44
33
0
22
1.53
123527464--123527779
138
2.3
137
84
0
407
35
17
18
29
1.93
123527654--123527860
94
2.2
94
90
0
333
32
19
20
28
1.97
123527508--123528011
232
2.2
230
85
1
648
33
18
19
29
1.95
123527739--123528047
137
2.2
138
89
0
467
33
18
19
28
1.96
123534678--123534719
18
2.3
18
91
0
66
50
11
19
19
1.78
123534686--123534721
18
2.0
18
100
0
72
44
16
16
22
1.86
123538631--123538684
20
2.7
20
82
2
63
72
1
24
1
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123541141--123541181
19
2.2
19
90
0
64
51
12
7
29
1.66
123544182--123544253
22
3.3
22
78
7
83
47
16
19
16
1.83
123545590--123545622
17
1.9
17
93
0
57
75
0
21
3
0.93
123548685--123548795
27
4.1
27
87
5
145
15
25
21
37
1.92
123548685--123548795
54
2.1
53
89
1
168
15
25
21
37
1.92
123555052--123555146
24
4.0
24
95
0
154
32
2
38
26
1.68
123557481--123557626
40
3.7
40
84
0
175
24
27
21
26
2.00
123557513--123557664
40
3.8
40
84
5
164
23
25
22
28
1.99
123565571--123565753
40
4.6
40
83
3
181
23
26
22
27
1.99
123573627--123573775
80
1.9
80
81
2
183
22
30
24
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433