genome.fa.s6.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  131  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40410806--40410842	19	1.9	19	88	0	56	29	2	2	64	1.21
40410883--40410923	20	2.0	20	85	4	55	29	4	7	58	1.46
40411430--40411468	6	5.7	7	91	8	55	0	10	0	89	0.48
40411430--40411470	15	3.1	13	86	13	57	0	9	0	90	0.46
40415942--40415976	14	2.5	14	90	0	52	40	8	22	28	1.84
40418466--40418506	20	2.0	20	90	0	64	14	39	24	21	1.91
40426750--40426942	59	3.3	59	78	8	203	22	33	23	20	1.97
40429854--40429928	34	2.2	34	95	4	134	42	26	9	21	1.83
40434142--40434177	2	18.0	2	100	0	72	50	0	0	50	1.00
40442145--40442169	12	2.1	12	100	0	50	64	8	0	28	1.22
40447622--40447703	41	2.0	41	85	4	112	29	19	20	30	1.97
40450774--40451104	48	6.9	49	75	7	304	26	30	17	26	1.97
40450778--40451104	144	2.3	143	82	3	388	26	30	16	26	1.97
40458074--40458390	48	6.6	47	74	7	264	24	28	19	27	1.99
40458073--40458354	96	2.9	94	80	5	291	25	28	18	28	1.98
40458077--40458403	144	2.3	142	82	3	370	24	29	19	26	1.98
40462700--40462734	17	2.1	17	88	0	52	34	0	0	65	0.93
40463640--40463672	17	1.9	17	88	11	50	51	0	0	48	1.00
40463640--40463682	22	2.0	21	90	4	68	51	0	0	48	1.00
40465073--40465205	40	3.4	40	73	16	125	34	24	17	23	1.96
40465102--40465206	37	2.7	38	82	11	126	36	23	17	22	1.95
40465378--40465409	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40466103--40466130	4	7.0	4	100	0	56	0	25	0	75	0.81
40466175--40466234	20	3.2	20	68	18	65	45	3	6	45	1.46
40466165--40466236	36	2.0	36	100	0	144	47	2	5	44	1.41
40466157--40466238	36	2.3	37	89	10	134	47	2	4	45	1.37
40468413--40468462	21	2.5	20	81	9	57	58	6	12	24	1.56
40471293--40471352	29	2.1	29	96	0	111	23	15	16	45	1.85
40472928--40472978	27	1.9	26	84	4	66	60	1	17	19	1.45
40476198--40476232	2	17.5	2	100	0	70	48	0	0	51	1.00
40476260--40476315	3	18.7	3	96	0	103	33	1	0	64	1.04
40476373--40476420	7	6.4	7	79	9	51	16	2	4	77	1.03
40481785--40481920	48	2.8	48	88	0	191	30	24	19	25	1.98
40485053--40485234	40	4.6	40	93	2	296	25	26	23	24	2.00
40493198--40493339	40	3.6	40	88	2	198	26	25	22	25	2.00
40493853--40493881	2	14.5	2	100	0	58	51	0	0	48	1.00
40500372--40500435	31	2.1	31	87	0	92	25	21	15	37	1.93
40500629--40500817	24	8.0	24	90	5	278	26	21	23	28	1.99
40500629--40500817	71	2.7	71	90	4	285	26	21	23	28	1.99
40500650--40500817	47	3.6	47	93	2	293	26	20	23	29	1.99
40500875--40500951	9	7.9	9	70	16	55	35	19	9	36	1.84
40500871--40500953	20	4.2	20	93	0	148	32	18	12	37	1.87
40500871--40500942	11	7.1	11	67	17	57	31	18	12	37	1.88
40502271--40502635	27	13.6	27	85	5	438	41	9	20	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40502270--40502635	81	4.6	80	87	3	488	41	9	20	28	1.83
40509004--40509134	30	4.5	30	86	8	171	28	25	13	32	1.94
40509003--40509134	58	2.3	58	85	4	176	28	26	13	31	1.94
40516774--40516902	30	4.5	30	87	8	178	27	26	13	32	1.94
40516773--40516902	56	2.3	58	86	4	183	26	26	13	32	1.94
40517833--40518059	124	1.8	125	87	2	341	39	15	16	28	1.89
40524088--40524171	28	3.0	28	91	1	132	19	3	30	46	1.66
40524092--40524185	28	3.6	24	78	18	91	15	4	34	45	1.66
40524376--40524420	22	2.0	23	95	4	83	17	17	22	42	1.89
40527657--40529209	390	4.0	390	98	0	2958	40	10	18	30	1.85
40530741--40530775	18	1.9	18	94	0	61	37	14	17	31	1.89
40531461--40531609	33	4.5	33	75	10	108	26	18	34	20	1.96
40532390--40532424	14	2.5	14	95	0	61	40	5	20	34	1.76
40534612--40534668	27	2.1	27	81	12	64	14	47	21	17	1.82
40535060--40535103	21	2.1	21	87	8	63	43	4	0	52	1.22
40541706--40541751	24	1.9	24	95	0	83	39	2	0	58	1.10
40541741--40541793	23	2.3	24	78	15	58	32	5	1	60	1.31
40544522--40544547	5	5.2	5	100	0	52	80	0	19	0	0.71
40544989--40545021	16	2.1	16	94	0	57	48	3	0	48	1.17
40544988--40545028	16	2.7	15	85	7	55	46	2	0	51	1.14
40545759--40545799	21	2.0	21	85	9	57	31	4	4	58	1.40
40545765--40545824	21	3.0	20	80	7	68	33	6	3	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40548653--40548691	20	2.0	19	85	14	53	61	2	0	35	1.10
40548656--40548694	18	2.2	18	86	9	53	64	2	0	33	1.08
40548698--40548754	30	1.9	29	85	3	78	56	3	0	40	1.17
40548705--40548755	24	2.2	24	86	6	70	56	5	0	37	1.23
40549406--40550785	585	2.4	578	84	3	1758	32	16	21	30	1.95
40552370--40552415	7	6.9	7	80	9	51	56	15	10	17	1.67
40553103--40553132	8	3.8	8	100	0	60	40	10	10	40	1.72
40553506--40553534	5	5.8	5	100	0	58	82	0	0	17	0.66
40553506--40553538	15	2.1	16	94	5	59	81	0	0	18	0.68
40558790--40558997	40	5.2	39	84	1	227	25	26	22	25	2.00
40558790--40558996	80	2.6	80	84	2	254	25	26	22	25	2.00
40560788--40560971	40	4.6	39	75	6	138	26	23	27	22	2.00
40560828--40561016	80	2.4	81	77	4	186	23	24	29	22	1.99
40568906--40569089	40	4.6	39	75	6	138	26	23	27	22	2.00
40568946--40569134	80	2.4	81	77	4	186	23	24	29	22	1.99
40579071--40579199	45	2.9	45	89	3	199	27	28	20	23	1.99
40580022--40580164	47	3.0	47	96	0	259	44	14	13	27	1.83
40589130--40589292	41	4.1	40	74	14	156	23	20	27	28	1.99
40597607--40597766	41	3.9	40	79	11	173	22	23	28	26	1.99
40597618--40597787	81	2.1	79	81	9	200	23	21	28	25	1.99
40602650--40602689	20	2.0	20	95	0	71	32	7	35	25	1.84
40606131--40606275	41	3.6	41	79	12	165	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40608693--40608832	25	5.6	25	84	2	131	30	19	25	25	1.98
40608693--40608831	50	2.8	50	81	5	149	29	19	25	25	1.98
40609688--40609727	20	2.1	19	90	4	62	30	5	2	62	1.29
40615862--40615888	14	1.9	14	100	0	54	55	0	0	44	0.99
40621857--40621914	28	2.1	28	100	0	116	27	17	18	36	1.94
40622681--40622735	23	2.3	24	78	9	60	61	5	9	23	1.46
40622980--40623031	14	3.6	14	80	10	68	55	5	5	32	1.47
40622968--40623034	30	2.2	30	97	0	125	50	5	8	34	1.58
40624154--40624371	42	5.2	42	80	2	215	22	18	17	41	1.90
40626124--40626163	22	1.9	21	85	10	55	52	5	0	42	1.23
40638989--40639084	9	10.6	9	70	25	51	15	6	1	77	1.03
40638989--40639085	11	8.5	11	73	16	65	15	6	1	77	1.02
40638994--40639085	17	5.9	16	71	14	59	15	6	1	77	1.03
40638994--40639085	25	3.7	25	73	15	84	15	6	1	77	1.03
40641510--40641566	27	2.1	27	100	0	114	38	7	26	28	1.82
40645120--40645248	64	2.0	64	95	0	231	21	29	19	29	1.98
40648960--40649072	40	2.8	40	82	5	138	23	23	29	24	1.99
40656942--40657054	40	2.8	40	82	5	138	23	23	29	24	1.99
40658629--40658699	13	5.5	13	84	0	79	39	26	7	26	1.82
40663318--40663375	29	2.0	29	100	0	116	31	13	17	37	1.89
40664534--40664561	14	2.0	14	100	0	56	35	21	7	35	1.81
40665102--40665147	23	2.0	23	100	0	92	39	13	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40676513--40676554	2	21.0	2	100	0	84	0	0	50	50	1.00
40678648--40678690	12	3.5	12	82	14	52	39	2	4	53	1.34
40678864--40679083	90	2.4	90	84	5	266	35	21	7	34	1.82
40679116--40679167	15	3.3	15	75	5	50	65	0	0	34	0.93
40679099--40679178	31	2.4	33	82	12	94	68	1	0	30	0.97
40680800--40681359	241	2.3	241	82	9	656	31	9	13	45	1.76
40685463--40685532	21	3.2	22	68	12	54	32	1	0	65	1.01
40685479--40685511	17	2.1	16	88	11	50	30	0	0	69	0.88
40685558--40685616	21	2.8	22	85	7	70	23	0	6	69	1.12
40685587--40685646	26	2.4	24	83	8	75	28	0	3	68	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433