genome.fa.s6.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  152  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47342334--47342408	24	3.2	23	70	22	75	17	16	4	62	1.47
47345256--47345315	30	2.0	30	96	0	111	40	6	11	41	1.68
47354077--47354146	27	2.5	28	97	2	133	28	12	27	31	1.93
47355955--47356012	29	2.0	29	100	0	116	37	24	3	34	1.72
47361019--47361148	67	1.9	67	87	6	192	30	30	15	23	1.95
47361220--47361353	58	2.3	58	84	3	191	25	27	18	28	1.98
47361617--47361657	21	1.9	22	85	14	59	36	17	2	43	1.62
47364437--47364501	30	2.2	30	88	5	96	29	4	23	43	1.74
47364435--47364556	28	4.2	28	79	12	104	36	4	19	39	1.74
47366890--47366958	24	2.9	22	74	20	59	72	4	20	2	1.15
47366890--47366958	15	4.5	14	74	23	50	72	4	20	2	1.15
47367659--47367706	15	3.2	15	80	11	62	37	0	12	50	1.41
47367625--47367682	24	2.3	26	77	19	70	31	0	20	48	1.50
47367840--47367976	40	3.5	38	78	7	141	29	18	21	29	1.97
47371689--47371738	23	2.2	23	85	7	66	34	20	0	46	1.51
47379814--47379877	10	6.9	9	73	16	51	73	3	21	1	1.06
47379814--47379876	14	4.5	13	74	16	56	73	3	22	1	1.07
47379805--47379872	33	2.1	33	83	10	86	73	4	19	2	1.13
47380530--47380587	24	2.3	26	77	19	70	31	0	20	48	1.50
47380745--47380884	40	3.5	40	78	6	142	26	17	23	32	1.97
47384307--47384421	27	4.3	26	87	5	149	36	23	23	16	1.94
47384307--47384421	54	2.1	54	88	3	169	36	23	23	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47384835--47384864	16	1.9	15	93	6	51	3	20	23	53	1.60
47386048--47386087	20	2.0	20	95	0	71	35	27	0	37	1.57
47386038--47386141	46	2.1	50	86	10	144	35	24	4	35	1.77
47386038--47386141	26	4.2	26	84	14	148	35	24	4	35	1.77
47386870--47386925	27	2.1	27	82	0	67	32	1	5	60	1.29
47397274--47397339	13	5.1	13	71	0	51	34	6	24	34	1.80
47407563--47407595	16	2.1	16	94	5	59	27	0	42	30	1.56
47411847--47411882	18	2.0	18	100	0	72	44	22	11	22	1.84
47412419--47412455	18	2.1	18	89	0	56	10	62	8	18	1.52
47413999--47414040	22	2.0	20	86	9	57	35	0	4	59	1.19
47415071--47415452	126	3.0	126	89	1	550	35	18	19	26	1.94
47421519--47421554	18	2.1	18	89	5	56	47	16	5	30	1.70
47423221--47423465	121	2.0	121	98	0	472	46	15	15	21	1.84
47423371--47423709	180	1.9	180	93	0	579	41	16	19	22	1.90
47429343--47429403	30	2.0	30	83	0	77	31	22	8	37	1.84
47434155--47434208	21	2.6	21	91	2	83	35	9	11	44	1.72
47450484--47450820	149	2.3	149	78	2	361	32	10	28	28	1.90
47452389--47452476	33	2.7	33	79	10	101	31	11	23	32	1.90
47458762--47458787	13	2.0	13	100	0	52	38	0	7	53	1.30
47459971--47460093	33	3.9	31	75	12	79	32	13	22	31	1.92
47459987--47460074	33	2.7	33	79	10	110	31	10	25	32	1.89
47463894--47464101	46	4.5	46	72	12	140	27	15	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47464032--47464145	48	2.5	46	84	8	144	26	15	30	27	1.96
47472143--47472191	26	1.9	26	83	4	64	20	14	18	46	1.83
47478015--47478072	23	2.5	23	83	10	82	27	15	32	24	1.95
47478015--47478087	23	3.2	23	73	11	69	27	16	31	24	1.96
47490290--47490637	47	7.3	47	91	1	507	32	8	30	28	1.87
47493927--47494005	40	2.0	40	90	5	124	24	18	10	46	1.80
47494925--47494957	13	2.5	13	100	0	66	12	45	18	24	1.83
47502354--47502499	40	3.7	40	84	0	175	24	27	21	26	2.00
47502386--47502537	40	3.8	40	84	5	164	23	25	22	28	1.99
47510462--47510607	40	3.7	40	84	0	175	24	27	21	26	2.00
47510494--47510645	40	3.8	40	84	5	164	23	25	22	28	1.99
47513711--47513923	40	5.3	40	91	2	322	23	23	26	26	2.00
47518919--47519213	50	5.9	50	77	4	263	26	16	26	30	1.97
47518970--47519159	101	1.9	101	86	0	272	26	18	25	28	1.98
47527428--47527497	27	2.6	27	90	2	113	31	27	12	28	1.93
47538211--47538354	46	3.1	44	68	21	98	29	28	19	22	1.98
47542156--47542336	46	3.9	46	81	9	233	20	21	29	27	1.98
47542158--47542328	93	1.8	93	96	0	315	20	22	29	27	1.98
47545263--47545331	15	4.6	15	83	0	84	11	17	13	57	1.64
47545254--47545341	30	3.0	30	81	8	99	10	17	15	56	1.66
47547710--47547844	46	2.9	47	80	10	170	20	20	30	28	1.98
47551416--47551587	93	1.8	93	88	0	263	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47551408--47551573	46	3.6	44	76	11	172	30	29	18	21	1.97
47558545--47558622	13	5.9	13	74	5	68	23	5	1	70	1.14
47565950--47565993	22	2.0	22	95	0	79	29	18	9	43	1.80
47572654--47572711	29	2.0	29	86	0	80	29	41	17	12	1.85
47575867--47575896	15	1.9	16	93	6	53	0	10	3	86	0.67
47584335--47584555	40	5.6	40	90	2	340	26	26	24	23	2.00
47584335--47584555	79	2.8	79	90	4	338	26	26	24	23	2.00
47584335--47584555	119	1.9	119	89	3	347	26	26	24	23	2.00
47599111--47599225	31	3.7	31	95	1	196	23	26	17	33	1.96
47599623--47599670	25	1.9	25	82	0	60	29	10	22	37	1.88
47600347--47600396	24	2.1	24	100	0	100	22	50	8	20	1.74
47601799--47601907	23	4.8	22	73	15	78	34	18	22	24	1.96
47606679--47607255	4	146.8	4	73	6	266	38	0	58	1	1.12
47606683--47607255	12	47.6	12	71	14	353	38	0	58	1	1.12
47606681--47607255	26	23.4	25	68	18	106	38	0	58	1	1.12
47608791--47609036	49	4.9	50	83	2	316	25	18	27	28	1.98
47608896--47608979	28	3.2	28	65	25	83	23	16	29	29	1.96
47610308--47610368	6	10.7	6	79	10	65	37	0	62	0	0.96
47610321--47610388	16	4.3	16	77	9	61	39	0	60	0	0.97
47610328--47610400	12	5.8	12	77	15	58	38	0	60	1	1.06
47612275--47612425	40	3.8	39	80	6	153	27	23	27	22	1.99
47612312--47612441	40	3.3	39	80	4	161	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47614302--47614485	40	4.6	40	81	2	172	28	22	26	22	1.99
47614342--47614530	80	2.4	80	77	5	184	24	22	29	23	1.99
47622378--47622559	40	4.6	39	80	6	161	27	22	26	23	1.99
47627850--47627901	22	2.3	23	84	12	65	46	25	5	23	1.74
47628143--47628178	18	1.9	19	88	5	56	47	25	0	27	1.52
47631494--47631539	24	1.9	24	90	0	74	32	10	28	28	1.91
47631493--47631546	24	2.2	24	83	0	72	33	12	25	27	1.93
47643038--47643100	23	2.7	23	80	7	74	33	17	25	23	1.96
47643609--47643660	24	2.2	24	89	0	77	51	9	3	34	1.53
47643751--47643809	29	2.0	29	90	0	91	30	28	11	28	1.92
47651492--47651538	24	2.0	24	95	0	85	46	8	8	36	1.65
47652266--47652299	17	2.0	17	100	0	68	29	11	35	23	1.90
47652619--47652707	40	2.2	40	84	6	108	53	5	4	35	1.45
47669220--47669289	27	2.6	27	93	2	113	30	28	14	27	1.95
47677111--47677180	27	2.6	27	95	2	122	30	27	14	28	1.95
47681103--47681295	39	4.9	39	90	0	251	23	31	21	23	1.98
47681133--47681295	39	4.2	39	93	0	263	24	31	20	23	1.98
47689078--47689270	39	4.9	39	90	0	251	23	31	21	23	1.98
47689108--47689270	39	4.2	39	93	0	263	24	31	20	23	1.98
47697064--47697225	39	4.2	39	91	2	245	24	32	19	22	1.97
47697064--47697214	77	1.9	79	91	2	252	23	32	20	23	1.98
47707440--47707473	16	2.1	17	88	5	52	58	5	0	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47709798--47709886	38	2.4	38	83	12	105	33	31	5	29	1.81
47714675--47714769	23	4.2	23	74	8	68	10	14	24	50	1.74
47714656--47714769	23	5.0	21	71	17	59	10	14	23	50	1.74
47714656--47714801	68	2.1	68	82	7	179	11	15	22	50	1.77
47716163--47716209	19	2.4	18	83	13	58	38	12	6	42	1.69
47718770--47718824	28	2.0	28	82	7	67	30	25	25	18	1.98
47718936--47719003	27	2.5	27	85	4	93	35	23	23	17	1.95
47728635--47728660	13	2.0	13	100	0	52	53	0	7	38	1.30
47730104--47730155	27	1.9	27	88	7	79	32	21	26	19	1.97
47736809--47736855	19	2.3	20	82	10	60	36	0	14	48	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433