Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  151  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46922791--46922942
43
3.5
43
77
7
148
24
18
25
31
1.97
46924600--46924640
22
1.9
22
85
14
59
26
4
24
43
1.74
46928054--46928095
21
2.0
20
82
13
50
52
2
11
33
1.51
46946916--46947023
32
3.3
32
83
3
119
40
8
7
43
1.63
46947928--46947981
17
3.2
17
76
10
65
57
9
7
25
1.56
46950806--46951072
48
5.6
46
83
8
286
26
32
17
23
1.97
46950806--46951080
96
2.9
96
86
2
374
27
32
17
22
1.96
46950806--46951080
144
1.9
143
85
4
374
27
32
17
22
1.96
46953365--46953423
28
2.1
29
84
9
77
44
1
23
30
1.64
46953974--46954092
47
2.5
47
91
0
202
24
14
27
33
1.94
46970903--46970962
29
2.1
27
81
6
66
41
3
26
28
1.71
46972858--46972966
37
2.9
37
91
0
173
27
30
18
23
1.98
46973113--46973400
48
6.0
48
91
2
461
30
26
6
35
1.83
46976704--46976910
80
2.6
80
94
1
344
27
22
28
22
1.99
46976660--46976910
40
6.3
40
82
4
285
27
22
26
23
1.99
46976660--46976910
120
2.1
120
83
5
330
27
22
26
23
1.99
46976706--46976970
120
2.2
120
79
4
264
24
23
29
23
1.99
46984773--46984873
39
2.5
40
85
1
132
30
22
24
21
1.99
46984773--46984923
40
3.8
40
84
4
180
28
22
25
23
1.99
46984769--46984940
40
4.4
38
77
10
161
29
21
26
23
1.99
46988297--46988321
8
3.1
8
100
0
50
0
36
40
24
1.55
46993428--46993483
17
3.2
17
66
14
51
66
8
5
19
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46993438--46993493
17
3.2
17
66
14
51
64
8
8
17
1.48
46993425--46993497
35
2.1
35
100
0
146
61
8
8
21
1.50
47000184--47000217
17
2.0
17
94
0
59
38
11
32
17
1.86
47001986--47002166
40
4.5
40
77
8
163
26
24
20
27
1.99
47010645--47010686
20
2.1
20
100
0
84
33
16
35
14
1.89
47020926--47020968
19
2.4
18
85
11
61
62
16
6
13
1.51
47033790--47033830
20
2.0
20
100
0
82
9
39
9
41
1.71
47037973--47038076
55
1.9
55
82
7
131
17
30
28
23
1.97
47047785--47047896
43
2.6
43
80
5
111
27
18
22
31
1.97
47049842--47049893
24
2.2
24
86
10
72
26
13
1
57
1.47
47055365--47055783
209
2.0
209
98
0
811
31
14
23
29
1.94
47059850--47059904
27
2.0
27
96
0
101
21
0
20
58
1.40
47059855--47059915
27
2.3
27
85
0
86
26
0
21
52
1.47
47068553--47068595
20
2.2
20
91
0
68
23
30
27
18
1.98
47070331--47070528
50
3.9
50
80
3
245
29
26
18
25
1.98
47070324--47070523
101
2.0
101
92
0
337
29
26
19
25
1.98
47070553--47070580
12
2.3
12
100
0
56
28
35
7
28
1.84
47074086--47074219
39
3.4
39
83
6
155
25
29
20
25
1.99
47081480--47081650
39
4.3
39
88
3
211
25
28
20
25
1.99
47081480--47081703
40
5.7
40
82
6
217
25
28
20
25
1.99
47104938--47104976
14
2.8
14
84
11
53
79
0
5
15
0.90
47110014--47110093
40
2.0
40
87
4
117
23
30
23
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47110067--47110119
26
2.0
26
88
0
79
22
32
22
22
1.98
47110090--47110243
40
3.8
40
93
3
249
25
27
24
22
2.00
47118012--47118091
40
2.0
40
87
4
117
23
30
23
22
1.99
47118065--47118117
26
2.0
26
92
0
88
22
33
22
20
1.97
47118088--47118241
40
3.8
40
90
3
231
27
28
22
21
1.99
47117998--47118197
106
1.9
105
87
3
294
25
28
23
23
1.99
47120954--47121100
74
2.0
74
97
0
276
34
17
18
29
1.94
47128694--47128751
26
2.2
26
93
0
98
34
5
24
36
1.78
47130190--47130260
26
2.7
26
82
4
70
35
21
11
32
1.89
47130368--47130480
27
4.2
27
86
3
138
15
24
23
36
1.94
47130366--47130480
54
2.1
54
90
3
178
15
24
23
36
1.94
47136001--47136080
37
2.2
37
95
0
142
26
11
18
43
1.84
47138412--47138436
3
8.3
3
100
0
50
32
0
0
68
0.90
47138501--47138545
20
2.2
20
92
0
72
22
24
15
37
1.93
47138562--47138605
19
2.3
19
96
4
79
52
15
9
22
1.71
47138751--47138779
3
9.7
3
100
0
58
65
0
34
0
0.93
47139464--47139550
33
2.6
33
98
0
165
31
4
33
31
1.78
47139824--47139864
21
2.0
21
85
0
55
26
26
19
26
1.99
47139899--47139967
31
2.3
31
82
7
79
23
8
18
49
1.75
47139958--47140006
20
2.5
20
96
0
89
36
12
26
24
1.91
47148386--47148426
20
2.0
20
100
0
82
43
19
9
26
1.82
47160067--47160157
44
2.1
44
93
0
155
30
6
13
49
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47170928--47170961
15
2.3
15
90
10
52
5
17
17
58
1.57
47190479--47190553
34
2.2
34
85
4
98
28
25
21
25
1.99
47201725--47201769
23
1.9
24
86
4
65
35
11
11
42
1.76
47205824--47205971
40
3.6
40
77
4
145
22
28
20
28
1.99
47205903--47206074
43
4.0
44
79
9
167
24
27
20
26
1.99
47214410--47214451
21
2.0
21
100
0
84
42
9
19
28
1.82
47220558--47220688
41
3.2
41
91
2
201
20
22
6
49
1.72
47227238--47227310
31
2.4
30
79
4
83
35
10
13
39
1.80
47227452--47227532
29
2.7
30
76
5
74
48
13
6
32
1.67
47231778--47231809
16
2.0
16
93
0
55
46
15
0
37
1.46
47235568--47235663
40
2.4
41
86
6
126
29
15
29
26
1.96
47236479--47236503
2
12.5
2
100
0
50
52
0
0
48
1.00
47238721--47238766
24
2.0
23
83
12
58
15
23
23
36
1.93
47245424--47245471
25
1.9
25
86
0
69
29
14
16
39
1.88
47252283--47252456
87
2.0
87
80
6
192
36
15
8
39
1.78
47252503--47252557
30
2.0
28
82
13
69
58
1
3
36
1.26
47252569--47252645
30
2.7
28
77
16
77
58
1
5
35
1.29
47252803--47252840
19
2.0
19
94
0
67
42
2
0
55
1.14
47252847--47252922
25
3.2
25
69
14
72
32
2
0
64
1.07
47252867--47252915
19
2.7
18
84
6
71
32
4
0
63
1.13
47254030--47254110
41
2.0
41
87
0
117
34
3
22
39
1.72
47254296--47254355
22
2.6
24
78
7
70
70
3
5
21
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47254284--47254335
22
2.4
22
78
9
63
75
5
3
15
1.14
47257006--47257032
5
5.4
5
100
0
54
0
18
0
81
0.69
47258385--47258411
7
3.9
7
100
0
54
0
11
0
88
0.50
47258733--47258995
45
5.8
45
82
5
257
38
10
21
29
1.87
47258861--47258972
14
7.6
14
71
11
80
41
10
20
26
1.85
47264121--47264150
11
2.9
10
90
9
51
13
0
6
80
0.91
47264182--47264208
2
13.5
2
100
0
54
51
0
0
48
1.00
47266819--47266857
22
1.9
20
85
15
53
38
0
0
61
0.96
47269371--47269396
2
13.0
2
100
0
52
50
0
0
50
1.00
47272450--47272489
19
2.0
20
90
4
64
55
7
5
32
1.50
47272551--47272602
25
2.1
25
85
7
70
73
1
9
15
1.18
47278106--47278192
41
2.2
40
82
2
102
65
8
1
25
1.27
47278175--47278243
28
2.5
27
74
6
66
63
1
5
28
1.26
47285786--47285827
21
2.0
21
85
0
57
23
11
28
35
1.91
47292342--47292491
43
3.5
43
75
8
153
26
12
24
36
1.91
47298154--47298185
12
2.4
14
85
15
50
0
21
46
31
1.52
47304148--47304213
32
2.1
32
91
5
107
37
13
12
36
1.82
47310777--47310987
94
2.2
94
96
1
388
27
27
16
27
1.97
47314830--47315013
40
4.6
39
80
9
194
24
23
27
23
2.00
47314829--47315011
79
2.3
81
82
7
223
25
24
27
23
2.00
47314910--47315032
40
3.1
40
80
8
101
25
23
28
22
1.99
47314882--47315046
79
2.1
79
82
6
192
26
22
27
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47317854--47317935
41
2.0
41
95
0
146
30
15
18
35
1.92
47320399--47320490
38
2.4
38
100
0
184
31
40
10
17
1.84
47325723--47325919
40
4.9
40
91
6
287
28
21
25
24
1.99
47325734--47325919
79
2.3
80
90
5
297
29
20
24
25
1.99
47325723--47325947
40
5.6
39
88
7
285
27
21
25
25
1.99
47325730--47325950
79
2.8
80
85
8
265
28
20
24
25
1.99
47325723--47325950
119
1.9
119
81
9
277
28
21
25
25
1.99
47333658--47333876
110
2.0
111
97
1
413
42
12
11
32
1.79
47335968--47336062
35
2.7
35
86
0
127
36
16
20
26
1.93
47338979--47339024
22
2.1
22
83
0
56
69
6
2
21
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433