Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  150  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46585216--46585474
141
1.8
139
80
8
308
24
28
18
28
1.98
46600798--46601014
49
4.6
49
77
7
164
26
26
20
26
1.99
46600993--46601161
48
3.6
48
81
3
182
23
26
20
29
1.99
46613003--46613064
20
3.4
20
70
25
73
22
0
17
59
1.37
46613001--46613067
34
2.0
34
100
0
134
23
0
17
58
1.39
46613013--46613067
17
3.2
17
68
27
53
23
0
20
56
1.42
46616092--46616138
24
1.9
25
95
4
87
57
0
2
40
1.11
46619564--46619590
2
13.5
2
100
0
54
51
0
0
48
1.00
46620950--46621110
56
2.9
56
83
1
198
31
19
19
29
1.97
46620942--46621110
28
6.0
28
80
5
173
31
18
19
30
1.96
46625124--46625430
49
6.3
49
92
1
496
32
8
29
28
1.86
46641231--46641346
46
2.6
45
86
4
144
21
29
19
29
1.98
46647327--46647394
34
2.0
34
94
0
118
33
11
20
33
1.89
46661264--46661516
39
6.5
39
92
0
425
30
26
21
21
1.98
46667409--46667436
6
4.7
6
100
0
56
14
0
0
85
0.59
46669732--46669851
43
2.8
42
81
7
161
27
25
17
30
1.97
46671161--46671228
21
3.2
21
74
0
64
20
22
30
26
1.98
46671175--46671236
21
3.0
21
73
0
61
19
20
30
29
1.97
46671161--46671257
42
2.3
42
85
0
131
18
20
34
26
1.96
46672863--46672906
3
14.7
3
80
0
52
63
0
4
31
1.14
46673307--46673469
3
53.0
3
71
12
109
63
1
6
28
1.29
46674816--46675551
88
8.6
88
85
5
693
22
24
21
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46674850--46674996
44
3.3
44
67
11
129
21
26
19
31
1.97
46674894--46675126
44
5.3
44
63
20
112
21
25
21
31
1.98
46675245--46675551
77
3.8
77
85
5
380
21
21
22
34
1.97
46675392--46675549
43
3.6
42
75
8
147
20
22
22
34
1.96
46675390--46675551
87
1.9
87
93
0
279
20
22
22
34
1.97
46683970--46684014
22
2.0
22
83
8
56
17
22
2
57
1.50
46686780--46686906
47
2.7
48
81
14
158
29
29
18
21
1.97
46686788--46686928
46
3.0
44
74
14
117
29
29
19
21
1.98
46692278--46692306
9
3.0
10
90
10
51
20
20
0
58
1.39
46694570--46694598
2
14.5
2
100
0
58
51
0
0
48
1.00
46701187--46701216
12
2.5
12
94
0
51
46
0
43
10
1.37
46703127--46703422
131
2.3
131
84
0
358
39
13
15
31
1.86
46706964--46707036
36
2.0
36
100
0
146
38
0
16
45
1.48
46708615--46708651
18
2.0
20
89
10
60
35
21
18
24
1.96
46710908--46710932
5
5.0
5
100
0
50
20
0
0
80
0.72
46713600--46713805
40
5.2
40
79
8
199
25
26
22
26
2.00
46713600--46713802
81
2.6
80
81
6
200
25
26
22
25
2.00
46721562--46721769
40
5.2
39
82
1
209
25
25
22
27
2.00
46721562--46721769
80
2.6
80
82
3
240
25
25
22
27
2.00
46727299--46727339
19
2.1
19
86
9
55
24
31
0
43
1.54
46736927--46736982
10
5.3
10
75
12
58
73
1
5
19
1.12
46741002--46741053
26
2.0
26
100
0
104
42
11
11
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46743186--46743571
194
2.0
194
88
1
567
45
12
7
34
1.69
46743634--46743704
10
7.4
10
71
15
51
66
0
0
33
0.92
46743634--46743710
27
2.9
25
76
14
75
64
0
0
35
0.93
46753382--46753551
91
1.8
93
87
2
254
24
16
30
28
1.96
46753333--46753598
49
5.6
50
76
11
236
25
18
29
26
1.98
46753328--46753586
140
1.8
142
82
4
337
25
17
28
28
1.98
46758033--46758475
219
2.0
220
85
3
588
32
14
19
33
1.92
46760260--46760329
22
3.1
22
78
10
79
25
20
14
40
1.90
46765610--46765707
41
2.4
42
80
8
114
28
16
27
27
1.97
46779276--46779334
29
2.0
30
96
3
111
16
13
30
38
1.88
46780736--46780845
54
2.0
55
87
1
159
27
10
24
38
1.87
46783023--46783208
40
4.7
40
88
5
218
25
21
26
26
1.99
46783076--46783231
80
2.0
79
82
8
192
26
20
26
26
1.99
46791627--46791828
39
5.1
39
86
7
250
24
21
27
25
1.99
46799718--46799903
40
4.7
40
88
5
218
25
21
26
26
1.99
46799771--46799926
80
2.0
79
82
8
192
26
20
26
26
1.99
46803657--46803957
48
6.5
48
70
10
239
29
24
18
26
1.98
46803736--46803957
91
2.4
91
87
0
309
31
25
17
25
1.97
46806607--46806832
40
5.6
40
85
5
267
26
15
26
32
1.95
46810588--46810634
24
2.0
24
100
0
94
10
25
17
46
1.79
46813222--46813265
20
2.3
19
84
11
54
29
2
2
65
1.16
46819392--46819424
16
2.1
16
100
0
66
45
0
6
48
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46822723--46822816
9
9.8
9
71
16
55
58
0
1
40
1.05
46822780--46822826
12
4.3
11
81
15
53
61
0
0
38
0.96
46822736--46822827
10
8.9
11
68
25
67
55
0
0
44
0.99
46822736--46822830
20
4.6
21
74
18
92
55
0
0
44
0.99
46824238--46824313
34
2.2
34
95
0
134
25
7
30
36
1.84
46828949--46829450
133
3.8
133
78
4
372
33
18
19
28
1.96
46829207--46829450
133
1.8
133
90
1
391
32
18
19
30
1.95
46832698--46832784
44
2.0
44
88
0
129
25
29
16
28
1.96
46832763--46833307
88
6.2
88
87
6
691
28
28
17
25
1.97
46832856--46833086
41
5.3
40
64
19
115
31
28
16
22
1.96
46833181--46833711
44
12.1
44
87
1
715
22
31
17
28
1.96
46834952--46835025
5
15.0
5
76
17
66
2
21
0
75
0.92
46837597--46837644
19
2.5
19
93
0
87
41
16
20
20
1.90
46837607--46837660
24
2.2
24
83
6
65
38
16
24
20
1.92
46838982--46839067
43
2.0
43
100
0
172
27
11
11
48
1.74
46839259--46839754
133
3.7
133
78
5
398
33
18
20
28
1.96
46842048--46842099
23
2.2
24
83
6
63
48
0
3
48
1.20
46843289--46843319
9
3.4
9
95
0
53
61
0
0
38
0.96
46843289--46843335
9
5.3
9
82
5
51
59
0
2
38
1.09
46852314--46852390
35
2.2
35
88
0
109
33
14
19
32
1.92
46855958--46856004
21
2.2
21
92
0
76
19
17
6
57
1.60
46857807--46858115
136
2.3
129
86
7
410
31
12
29
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46861130--46861171
20
2.0
22
86
9
61
47
0
11
40
1.40
46862010--46862046
2
18.5
2
100
0
74
51
0
0
48
1.00
46864399--46864423
12
2.1
12
100
0
50
20
40
24
16
1.91
46867258--46867337
42
1.9
42
84
5
108
26
18
26
28
1.98
46878033--46878069
19
1.9
19
88
0
56
37
2
21
37
1.68
46879294--46879371
3
26.0
3
100
0
156
66
0
0
33
0.92
46879506--46879530
10
2.5
10
100
0
50
72
0
0
28
0.86
46879501--46879534
14
2.4
14
90
9
52
70
0
2
26
1.01
46879863--46879893
10
3.0
10
95
4
53
87
0
0
12
0.55
46880730--46880766
19
1.9
19
88
0
56
37
2
21
37
1.68
46881336--46881431
28
3.6
28
72
20
73
43
1
1
54
1.14
46881389--46881428
7
5.4
7
82
11
53
37
2
0
60
1.11
46881374--46881431
24
2.3
26
82
11
75
36
1
1
60
1.17
46881497--46881527
6
5.0
6
96
4
53
80
0
19
0
0.71
46882389--46882475
29
3.1
28
78
16
74
47
0
16
36
1.47
46883617--46883660
22
2.0
22
100
0
88
45
4
18
31
1.69
46885030--46885064
5
6.6
5
87
12
52
17
0
0
82
0.66
46892566--46892732
83
2.0
83
100
0
334
35
5
22
35
1.79
46893124--46893343
47
4.7
47
94
0
386
32
12
28
26
1.92
46893266--46893465
48
4.2
48
88
5
255
32
7
29
31
1.84
46893441--46893498
17
3.4
17
66
29
50
32
1
25
39
1.66
46893428--46893500
35
2.1
35
100
0
146
30
2
30
36
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46893677--46893785
37
2.9
37
95
0
191
22
19
31
26
1.98
46896557--46896612
26
2.2
25
81
6
67
46
0
0
53
1.00
46900127--46900184
26
2.2
26
84
3
71
55
13
10
20
1.68
46900790--46900828
2
20.0
2
94
5
71
51
0
0
48
1.00
46910192--46910229
20
1.9
20
88
0
58
34
2
10
52
1.50
46911856--46911924
28
2.5
28
95
2
122
43
27
10
18
1.82
46918122--46918159
20
1.9
20
88
0
58
34
2
10
52
1.50
46919782--46919850
28
2.5
28
95
2
122
43
27
10
18
1.82
46922781--46922931
44
3.5
43
78
8
137
25
17
23
33
1.96
46922781--46922942
86
1.9
87
81
11
199
25
17
24
32
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433