genome.fa.s6.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  142  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43829042--43829167	45	2.8	46	86	4	177	28	27	23	20	1.99
43829160--43829323	38	4.3	38	89	0	229	31	26	21	20	1.98
43829627--43829761	43	3.1	44	83	6	175	28	29	17	24	1.97
43830612--43830714	29	3.6	28	80	5	116	29	33	16	21	1.95
43837517--43837619	29	3.6	28	80	5	116	29	33	16	21	1.95
43844174--43844249	40	1.9	40	86	0	107	18	34	18	28	1.95
43844183--43844283	40	2.5	40	80	4	107	15	31	21	30	1.95
43847360--43847399	21	1.9	21	100	0	80	37	25	15	22	1.93
43849231--43849273	17	2.4	18	80	11	52	30	0	13	55	1.39
43851889--43851931	10	4.2	10	81	3	50	46	20	2	30	1.63
43859751--43859826	34	2.2	35	85	2	109	31	7	7	52	1.59
43863381--43863480	27	3.7	28	80	9	100	41	20	9	30	1.83
43863381--43863487	54	2.0	54	83	3	135	39	20	9	30	1.84
43863465--43863525	27	2.3	27	79	0	68	32	27	8	31	1.86
43863422--43863724	81	3.8	80	74	5	216	31	23	8	36	1.85
43863476--43863686	27	7.8	27	88	2	271	28	24	8	38	1.84
43863584--43863915	27	12.2	27	79	9	108	37	19	8	34	1.83
43863665--43863942	54	5.1	54	73	10	233	39	20	8	32	1.83
43863667--43863861	81	2.4	80	82	10	243	38	21	8	31	1.83
43863678--43863944	27	9.8	27	79	7	166	39	19	8	31	1.83
43863962--43864039	27	2.9	27	77	11	88	35	21	20	21	1.96
43865196--43865243	25	1.9	25	91	0	78	35	25	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43865287--43865345	20	3.0	20	97	0	109	37	10	20	32	1.86
43865291--43865345	11	5.4	11	70	16	55	38	10	20	30	1.87
43865396--43865538	24	6.0	24	90	4	200	28	21	22	27	1.99
43865396--43865538	47	3.0	47	88	5	198	28	21	22	27	1.99
43865396--43865539	71	2.0	72	87	4	211	29	21	22	27	1.99
43865730--43865824	31	3.1	31	96	0	172	38	14	22	24	1.91
43867185--43867214	13	2.4	13	94	5	53	90	10	0	0	0.47
43879660--43879769	40	2.8	40	85	0	148	26	23	26	23	2.00
43879660--43879809	40	3.8	39	80	7	133	26	22	26	24	2.00
43882057--43882175	40	3.0	39	86	4	159	26	26	21	26	1.99
43882010--43882214	40	5.1	39	76	10	141	26	26	21	24	2.00
43885666--43885847	46	4.0	46	97	0	337	34	7	27	31	1.84
43885851--43885961	47	2.4	47	89	0	168	36	9	27	27	1.87
43888519--43888782	40	6.6	40	95	0	429	25	21	28	25	1.99
43889446--43889546	40	2.5	40	82	6	107	26	22	25	24	2.00
43889484--43889580	40	2.5	40	78	8	99	27	24	24	22	2.00
43892247--43892428	46	4.0	46	97	0	337	34	7	27	31	1.84
43892432--43892542	47	2.4	47	89	0	168	36	9	27	27	1.87
43895952--43896106	43	3.6	42	78	7	127	25	16	25	32	1.96
43907693--43907887	39	5.0	39	91	3	295	26	20	31	22	1.98
43907709--43907964	78	3.3	78	84	5	223	25	21	30	23	1.99
43915722--43915912	39	5.0	39	89	6	284	26	19	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43915721--43915952	74	3.0	75	86	5	295	25	20	31	23	1.98
43915734--43915989	74	3.3	75	83	7	219	25	20	30	23	1.99
43922404--43922493	13	7.1	13	92	5	157	16	36	31	15	1.90
43924506--43924556	18	2.7	19	71	14	52	25	0	15	58	1.37
43928996--43929190	39	5.0	39	90	3	295	26	20	30	22	1.98
43928996--43929229	78	3.0	77	88	3	308	25	20	30	23	1.98
43929008--43929267	78	3.3	78	85	5	231	25	20	30	23	1.99
43935690--43935768	13	6.1	13	96	0	149	16	36	31	15	1.90
43937780--43937830	18	2.7	19	71	14	52	25	0	15	58	1.37
43942341--43942523	40	4.6	39	75	7	138	26	23	27	22	1.99
43942380--43942568	80	2.4	81	77	4	186	23	24	29	22	1.99
43946704--43946833	29	4.5	29	86	6	165	32	13	26	27	1.94
43953904--43954061	29	5.4	30	87	9	211	32	13	25	28	1.93
43953934--43954061	59	2.2	57	93	5	213	34	13	25	27	1.93
43959352--43959421	34	2.1	34	97	0	131	42	1	0	55	1.08
43959363--43959426	16	3.8	16	86	10	83	42	4	0	53	1.22
43959535--43959583	15	3.3	15	75	16	57	63	4	0	32	1.13
43959539--43959586	14	3.4	14	75	16	53	64	4	0	31	1.12
43960286--43960334	19	2.5	20	77	9	57	36	2	0	61	1.08
43960346--43960407	27	2.3	27	85	0	79	22	24	29	24	1.99
43961141--43961212	26	2.9	24	80	13	83	63	2	0	33	1.08
43961141--43961211	27	2.7	27	81	14	78	63	2	0	33	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43962128--43962172	22	2.0	23	86	4	65	22	2	4	71	1.15
43964236--43964278	22	2.0	21	81	4	50	46	4	0	48	1.22
43971748--43971815	34	2.0	34	94	0	118	26	16	1	55	1.49
43975542--43975669	40	3.2	40	86	1	168	24	31	21	22	1.98
43975675--43975713	17	2.5	15	84	15	60	30	15	30	23	1.95
43975681--43975713	17	1.9	17	100	0	66	33	12	30	24	1.91
43979132--43979302	39	4.4	39	87	0	207	23	30	21	24	1.99
43979151--43979303	39	3.9	39	90	0	234	24	31	20	24	1.98
43979132--43979302	78	2.2	79	88	1	245	23	30	21	24	1.99
43983187--43983243	29	2.0	29	82	6	71	29	21	8	40	1.83
43983793--43983836	9	4.8	9	83	5	61	22	43	2	31	1.66
43988528--43988571	22	2.0	22	100	0	88	40	18	18	22	1.91
43989739--43989770	12	2.7	12	100	0	64	31	31	18	18	1.95
43992093--43992250	80	2.0	78	88	4	237	39	9	13	37	1.77
43993548--43993601	26	2.1	26	100	0	108	37	3	11	48	1.57
43994135--43994165	2	15.5	2	100	0	62	51	0	0	48	1.00
43994175--43994211	15	2.4	16	90	4	58	67	0	10	21	1.21
43994528--43994615	43	2.0	46	84	8	119	7	19	15	56	1.63
43995571--43995665	47	2.0	46	95	2	172	23	8	18	49	1.75
43995884--43995943	29	2.1	29	96	0	111	28	23	8	40	1.83
43996082--43996119	16	2.5	15	83	16	51	28	2	10	57	1.45
43996086--43996119	16	2.3	15	90	10	52	29	2	11	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43996790--43996864	38	2.0	38	97	0	141	36	9	2	52	1.48
43997040--43997072	12	2.8	12	90	9	50	33	48	9	9	1.66
43999798--43999849	27	1.9	27	96	0	95	50	15	5	28	1.67
44008178--44008225	24	2.0	25	83	4	62	54	8	4	33	1.50
44008186--44008238	25	2.2	24	83	10	63	58	9	0	32	1.30
44010124--44010148	13	1.9	13	100	0	50	64	4	16	16	1.44
44010139--44010403	67	3.9	67	92	2	390	41	15	14	28	1.87
44010139--44010375	67	3.5	67	94	1	393	40	17	15	27	1.89
44010349--44010599	72	3.5	70	82	4	270	29	21	17	32	1.96
44010625--44010918	71	3.9	71	69	14	228	31	21	16	29	1.96
44010467--44011007	160	3.4	160	97	0	998	31	21	17	29	1.96
44024729--44024797	15	4.6	15	83	0	84	11	17	13	57	1.64
44024720--44024807	30	3.0	30	81	8	99	10	17	15	56	1.66
44032059--44032127	15	4.6	15	83	0	84	11	17	13	57	1.64
44032050--44032137	30	3.0	30	81	8	99	10	17	15	56	1.66
44039847--44039894	24	2.0	25	83	4	62	54	8	4	33	1.50
44039855--44039907	25	2.2	24	83	10	63	58	9	0	32	1.30
44043345--44043383	13	3.0	13	84	0	60	5	25	43	25	1.75
44044170--44044242	38	1.9	38	97	0	137	41	23	16	19	1.90
44047564--44047602	16	2.4	16	91	4	60	25	0	15	58	1.37
44049150--44049188	20	2.0	20	89	0	60	46	0	10	43	1.37
44052318--44052492	46	3.8	46	77	13	196	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44052325--44052496	93	1.8	93	93	0	299	28	29	20	21	1.98
44052367--44052505	47	3.0	46	73	16	135	30	28	18	22	1.97
44052914--44052973	30	2.0	30	90	0	93	30	25	8	36	1.85
44064484--44064535	25	2.1	25	100	0	104	25	7	25	42	1.81
44070871--44070896	13	2.0	13	100	0	52	23	7	30	38	1.83
44078634--44078691	19	3.1	19	82	2	64	34	20	22	22	1.97
44083583--44083613	10	3.2	10	90	9	55	41	0	0	58	0.98
44086909--44087000	18	5.2	18	84	5	107	45	7	4	42	1.52
44086906--44087000	26	3.7	26	85	2	122	45	8	4	42	1.54
44086906--44086991	8	10.2	8	80	9	91	45	8	4	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433